FFCP PHASE1:Hg19::chr4:41614720..41614734,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22998 | |EntrezGene=22998 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29191 | |HGNC=29191 | ||
|TSSclassifier=strong | |||
|UniProt=E9PDJ9 | |UniProt=E9PDJ9 | ||
|association_with_transcript=0bp_to_ENST00000509277_5end | |association_with_transcript=0bp_to_ENST00000509277_5end | ||
|cluster_id=chr4:41614720..41614734,+ | |||
|description=CAGE_peak_28_at_LIMCH1_5end | |description=CAGE_peak_28_at_LIMCH1_5end | ||
|id=chr4:41614720..41614734,+ | |id=chr4:41614720..41614734,+ | ||
|ontology_enrichment_celltype=CL:0000064!2.04e-07!3;CL:0005012!2.04e-07!3;CL:0000067!2.04e-07!3;CL:0002304!2.04e-07!3 | |ontology_enrichment_celltype=CL:0000064!2.04e-07!3;CL:0005012!2.04e-07!3;CL:0000067!2.04e-07!3;CL:0002304!2.04e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000062;3.74e-12;9!CL:0002586;1.30e-09;3!CL:0000149;1.59e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000062,4.03e-10,11;CL:0000375,4.03e-10,11;CL:0000335,4.03e-10,11;CL:0002586,1.30e-09,3;CL:0000149,1.59e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.77e-33;3!UBERON:0005425;9.79e-26;1!CL:0000335;4.03e-10;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4468;1.37e-13;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,1.37e-13,2 | |||
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|ontology_enrichment_uberon_v019=UBERON:0000941;9.79e-26;1!UBERON:0001785;9.79e-26;1!UBERON:0002464;9.79e-26;1!UBERON:0004904;9.79e-26;1!UBERON:0001021;9.79e-26;1!UBERON:0000966;1.10e-20;5!UBERON:0005388;1.10e-20;5!UBERON:0001802;1.10e-20;5!UBERON:0003714;1.37e-13;2!UBERON:0005162;1.37e-13;2!UBERON:0000122;1.37e-13;2!UBERON:0000010;5.83e-12;8!UBERON:0002104;3.00e-11;21!UBERON:0001032;6.29e-10;24!UBERON:0004456;6.29e-10;24!UBERON:0001781;1.30e-09;3!UBERON:0001782;1.30e-09;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,2.21e-37,6;UBERON:0005388,2.21e-37,6;UBERON:0001802,2.21e-37,6;UBERON:0000941,7.62e-26,1;UBERON:0001785,7.62e-26,1;UBERON:0002464,7.62e-26,1;UBERON:0004904,7.62e-26,1;UBERON:0001021,7.62e-26,1;UBERON:0003902,7.62e-26,1;UBERON:0005425,7.62e-26,1;UBERON:0001781,1.26e-25,4;UBERON:0003714,1.21e-13,2;UBERON:0005162,1.21e-13,2;UBERON:0000122,1.21e-13,2;UBERON:0000010,5.22e-12,8;UBERON:0000019,8.90e-12,20;UBERON:0000047,8.90e-12,20;UBERON:0010312,8.90e-12,20;UBERON:0004088,8.90e-12,20;UBERON:0010230,8.90e-12,20;UBERON:0003072,8.90e-12,20;UBERON:0004128,8.90e-12,20;UBERON:0003071,8.90e-12,20;UBERON:0000970,3.00e-11,21;UBERON:0002104,3.00e-11,21;UBERON:0001456,9.07e-11,22;UBERON:0000020,6.29e-10,24;UBERON:0001032,6.29e-10,24;UBERON:0004456,6.29e-10,24;UBERON:0001782,1.30e-09,3;UBERON:0005424,1.30e-09,3;UBERON:0005085,7.90e-08,31 | |||
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| ||
|short_description=p28@LIMCH1 | |short_description=p28@LIMCH1 | ||
}} | }} |
Latest revision as of 19:41, 17 September 2015
Short description: | p28@LIMCH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_28_at_LIMCH1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000509277_5end |
EntrezGene: | LIMCH1 |
HGNC: | 29191 |
UniProt: | E9PDJ9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
osteoblast | 4.03e-10 | 11 |
osteoprogenitor cell | 4.03e-10 | 11 |
mesenchyme condensation cell | 4.03e-10 | 11 |
retinal pigment epithelial cell | 1.30e-09 | 3 |
visual pigment cell | 1.59e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
retina | 2.21e-37 | 6 |
photoreceptor array | 2.21e-37 | 6 |
posterior segment of eyeball | 2.21e-37 | 6 |
cranial nerve II | 7.62e-26 | 1 |
cranial nerve | 7.62e-26 | 1 |
nerve trunk | 7.62e-26 | 1 |
nerve connecting eye with brain | 7.62e-26 | 1 |
nerve | 7.62e-26 | 1 |
retinal neural layer | 7.62e-26 | 1 |
presumptive neural retina | 7.62e-26 | 1 |
layer of retina | 1.26e-25 | 4 |
neural tissue | 1.21e-13 | 2 |
multi cell component structure | 1.21e-13 | 2 |
neuron projection bundle | 1.21e-13 | 2 |
peripheral nervous system | 5.22e-12 | 8 |
camera-type eye | 8.90e-12 | 20 |
simple eye | 8.90e-12 | 20 |
immature eye | 8.90e-12 | 20 |
ocular region | 8.90e-12 | 20 |
eyeball of camera-type eye | 8.90e-12 | 20 |
optic cup | 8.90e-12 | 20 |
optic vesicle | 8.90e-12 | 20 |
eye primordium | 8.90e-12 | 20 |
eye | 3.00e-11 | 21 |
visual system | 3.00e-11 | 21 |
face | 9.07e-11 | 22 |
sense organ | 6.29e-10 | 24 |
sensory system | 6.29e-10 | 24 |
entire sense organ system | 6.29e-10 | 24 |
pigmented layer of retina | 1.30e-09 | 3 |
presumptive retinal pigmented epithelium | 1.30e-09 | 3 |
ectodermal placode | 7.90e-08 | 31 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 1.37e-13 | 2 |