FFCP PHASE1:Hg19::chr12:56473691..56473705,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:56473691..56473705,+
|short_description=p5@ERBB3
|description=CAGE_peak_5_at_ERBB3_5end
|association_with_transcript=46bp_to_ENST00000267101_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2065 | |EntrezGene=2065 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3431 | |HGNC=3431 | ||
|TSSclassifier=strong | |||
|UniProt=P21860 | |UniProt=P21860 | ||
|association_with_transcript=46bp_to_ENST00000267101_5end | |||
|cluster_id=chr12:56473691..56473705,+ | |||
|description=CAGE_peak_5_at_ERBB3_5end | |||
|id=chr12:56473691..56473705,+ | |||
|ontology_enrichment_celltype=CL:0002322!6.07e-09!5;CL:0000148!5.19e-07!10;CL:0000541!5.19e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.12e-24;5!CL:0000148;1.84e-12;10!CL:0000540;4.59e-12;6!CL:0000404;4.59e-12;6!CL:0000182;1.53e-10;12!CL:0000147;6.02e-09;14!CL:0002321;2.33e-08;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,6.49e-25,5;CL:0000148,1.74e-12,10;CL:0000541,1.74e-12,10;CL:0000540,2.92e-12,6;CL:0000031,2.92e-12,6;CL:0000404,2.92e-12,6;CL:0000182,1.96e-10,12;CL:0000047,2.53e-09,8;CL:0000147,5.79e-09,14 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.98e-17;11!UBERON:0009497;9.90e-15;13!CL:0000031;4.59e-12;6!UBERON:0005425;1.60e-09;1!UBERON:0008425;5.30e-09;1!UBERON:0003104;1.56e-08;31 | |||
|ontology_enrichment_disease=DOID:305!1.28e-09!106;DOID:0050687!1.61e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:5093;1.35e-08;4!DOID:1612;1.35e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,2.13e-08,4;DOID:1612,2.13e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.86e-21!57;UBERON:0005068!1.86e-21!57;UBERON:0006241!1.86e-21!57;UBERON:0007135!1.86e-21!57;UBERON:0007023!2.62e-20!115;UBERON:0001017!3.95e-18!82;UBERON:0005743!6.32e-18!86;UBERON:0002780!5.74e-17!41;UBERON:0001890!5.74e-17!41;UBERON:0006240!5.74e-17!41;UBERON:0003075!1.43e-16!86;UBERON:0007284!1.43e-16!86;UBERON:0003080!2.20e-16!42;UBERON:0001893!2.37e-16!34;UBERON:0002020!2.91e-16!34;UBERON:0003528!2.91e-16!34;UBERON:0000073!2.95e-16!94;UBERON:0001016!2.95e-16!94;UBERON:0002616!4.52e-16!59;UBERON:0002791!1.43e-15!33;UBERON:0002346!2.62e-15!90;UBERON:0002619!8.56e-15!22;UBERON:0001869!1.91e-14!32;UBERON:0000955!3.03e-13!69;UBERON:0006238!3.03e-13!69;UBERON:0001950!1.57e-12!20;UBERON:0000956!1.68e-12!25;UBERON:0000203!1.68e-12!25;UBERON:0003056!4.98e-11!61;UBERON:0004121!5.86e-11!169;UBERON:0000924!2.22e-10!173;UBERON:0006601!2.22e-10!173;UBERON:0000033!2.40e-07!123;UBERON:0000025!3.00e-07!194;UBERON:0000153!3.49e-07!129;UBERON:0007811!3.49e-07!129;UBERON:0000483!6.47e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;1.99e-12;49!UBERON:0002107;4.98e-10;19!UBERON:0006925;4.98e-10;19!UBERON:0000941;1.60e-09;1!UBERON:0001785;1.60e-09;1!UBERON:0002464;1.60e-09;1!UBERON:0004904;1.60e-09;1!UBERON:0001021;1.60e-09;1!UBERON:0007029;2.04e-09;1!UBERON:0002365;4.96e-08;31!UBERON:0002330;4.96e-08;31!UBERON:0002423;1.42e-07;25!UBERON:0002368;1.60e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,6.18e-10,19;UBERON:0006925,6.18e-10,19;UBERON:0008836,6.18e-10,19;UBERON:0000941,1.60e-09,1;UBERON:0001785,1.60e-09,1;UBERON:0002464,1.60e-09,1;UBERON:0004904,1.60e-09,1;UBERON:0001021,1.60e-09,1;UBERON:0003902,1.60e-09,1;UBERON:0005425,1.60e-09,1;UBERON:0007029,2.04e-09,1;UBERON:0008835,1.48e-08,22;UBERON:0003894,1.48e-08,22;UBERON:0002365,2.34e-08,31;UBERON:0002330,2.34e-08,31;UBERON:0009854,3.56e-08,23;UBERON:0007499,1.67e-07,25;UBERON:0009497,1.67e-07,25;UBERON:0000015,1.67e-07,25;UBERON:0002423,1.67e-07,25;UBERON:0006235,1.67e-07,25;UBERON:0004161,1.67e-07,25;UBERON:0002368,2.01e-07,35;UBERON:0009856,3.30e-07,26 | |||
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| ||
|short_description=p5@ERBB3 | |||
}} | }} |
Latest revision as of 09:36, 19 September 2015
Short description: | p5@ERBB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_ERBB3_5end |
Coexpression cluster: | NA |
Association with transcript: | 46bp_to_ENST00000267101_5end |
EntrezGene: | ERBB3 |
HGNC: | 3431 |
UniProt: | P21860 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 6.49e-25 | 5 |
melanocyte | 1.74e-12 | 10 |
melanoblast | 1.74e-12 | 10 |
neuron | 2.92e-12 | 6 |
neuroblast | 2.92e-12 | 6 |
electrically signaling cell | 2.92e-12 | 6 |
hepatocyte | 1.96e-10 | 12 |
neuronal stem cell | 2.53e-09 | 8 |
pigment cell | 5.79e-09 | 14 |
Ontology term | p-value | n |
---|---|---|
liver | 6.18e-10 | 19 |
digestive gland | 6.18e-10 | 19 |
liver bud | 6.18e-10 | 19 |
cranial nerve II | 1.60e-09 | 1 |
cranial nerve | 1.60e-09 | 1 |
nerve trunk | 1.60e-09 | 1 |
nerve connecting eye with brain | 1.60e-09 | 1 |
nerve | 1.60e-09 | 1 |
retinal neural layer | 1.60e-09 | 1 |
presumptive neural retina | 1.60e-09 | 1 |
surface | 2.04e-09 | 1 |
hepatic diverticulum | 1.48e-08 | 22 |
liver primordium | 1.48e-08 | 22 |
exocrine gland | 2.34e-08 | 31 |
exocrine system | 2.34e-08 | 31 |
digestive tract diverticulum | 3.56e-08 | 23 |
epithelial sac | 1.67e-07 | 25 |
epithelium of foregut-midgut junction | 1.67e-07 | 25 |
anatomical boundary | 1.67e-07 | 25 |
hepatobiliary system | 1.67e-07 | 25 |
foregut-midgut junction | 1.67e-07 | 25 |
septum transversum | 1.67e-07 | 25 |
endocrine gland | 2.01e-07 | 35 |
sac | 3.30e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 2.13e-08 | 4 |
breast cancer | 2.13e-08 | 4 |