FFCP PHASE1:Hg19::chr1:172147726..172147731,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:172147726..172147731,+ | |||
|coexpression_cluster_id=C1116 | |||
|description=CAGE_peak_at_chr1:172147726..172147731,+ | |description=CAGE_peak_at_chr1:172147726..172147731,+ | ||
|id=chr1:172147726..172147731,+ | |id=chr1:172147726..172147731,+ | ||
|ontology_enrichment_celltype=CL:0002253!3.62e-12!2;CL:0000153!6.54e-11!9;CL:0000447!6.54e-11!9;CL:0000214!9.66e-09!3;CL:0000327!2.44e-07!14 | |ontology_enrichment_celltype=CL:0002253!3.62e-12!2;CL:0000153!6.54e-11!9;CL:0000447!6.54e-11!9;CL:0000214!9.66e-09!3;CL:0000327!2.44e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000153;2.87e-30;9!CL:0000447;2.87e-30;9!CL:0000214;3.66e-23;3!CL:0000327;1.08e-18;15!CL:0000138;2.19e-12;6!CL:0000499;1.43e-10;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,3.09e-30,9;CL:0000447,3.09e-30,9;CL:0000214,4.09e-23,3;CL:0000327,1.13e-18,15;CL:0000058,2.19e-12,6;CL:0000138,2.19e-12,6;CL:0000499,1.47e-10,28;CL:0000151,1.85e-08,36 | |||
|ontology_enrichment_development_v019=UBERON:0003918;6.34e-08;10!UBERON:0007687;6.34e-08;10 | |||
|ontology_enrichment_disease=DOID:3371!1.07e-23!1;DOID:4549!1.07e-23!1;DOID:5861!1.07e-23!1;DOID:6496!1.07e-23!1;DOID:1115!1.15e-10!20 | |ontology_enrichment_disease=DOID:3371!1.07e-23!1;DOID:4549!1.07e-23!1;DOID:5861!1.07e-23!1;DOID:6496!1.07e-23!1;DOID:1115!1.15e-10!20 | ||
|ontology_enrichment_disease_v019=DOID:3371;1.23e-66;1!DOID:4549;1.23e-66;1!DOID:5861;1.23e-66;1!DOID:6496;1.23e-66;1!DOID:1115;2.49e-14;20!DOID:201;2.19e-12;6!DOID:0060100;2.19e-12;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.23e-66,1;DOID:4549,1.23e-66,1;DOID:5861,1.23e-66,1;DOID:6496,1.23e-66,1;DOID:1115,2.58e-14,20;DOID:201,2.19e-12,6;DOID:0060100,2.19e-12,6 | |||
|ontology_enrichment_uberon=UBERON:0001876!2.07e-12!2;UBERON:0002418!8.31e-09!3;UBERON:0004755!8.31e-09!3;UBERON:0006915!9.66e-09!3;UBERON:0002018!9.66e-09!3;UBERON:0002217!9.66e-09!3;UBERON:0007616!9.66e-09!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002418;2.62e-23;3!UBERON:0004755;2.62e-23;3!UBERON:0006915;3.66e-23;3!UBERON:0007616;3.66e-23;3!UBERON:0002217;3.66e-23;3!UBERON:0002018;3.66e-23;3!UBERON:0004905;1.41e-09;8!UBERON:0000982;1.41e-09;8!UBERON:0004770;1.41e-09;8!UBERON:0004457;1.16e-08;9!UBERON:0000042;1.16e-08;9!UBERON:0001434;2.46e-07;36!UBERON:0000486;8.14e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002418,2.62e-23,3;UBERON:0004755,2.62e-23,3;UBERON:0006915,4.09e-23,3;UBERON:0007616,4.09e-23,3;UBERON:0002217,4.09e-23,3;UBERON:0002018,4.09e-23,3;UBERON:0004905,1.47e-09,8;UBERON:0000982,1.47e-09,8;UBERON:0004770,1.47e-09,8;UBERON:0004457,8.38e-07,12;UBERON:0000042,8.38e-07,12 | |||
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|short_description=p@chr1:172147726..172147731,+ | |short_description=p@chr1:172147726..172147731,+ | ||
}} | }} |
Latest revision as of 00:25, 28 July 2015
Short description: | p@chr1:172147726..172147731, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:172147726..172147731, + |
Coexpression cluster: | C1116_Wilms_extraskeletal_mesodermal_retina_Olfactory_leiomyoblastoma_spinal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 3.09e-30 | 9 |
carbohydrate secreting cell | 3.09e-30 | 9 |
synovial cell | 4.09e-23 | 3 |
extracellular matrix secreting cell | 1.13e-18 | 15 |
chondroblast | 2.19e-12 | 6 |
chondrocyte | 2.19e-12 | 6 |
stromal cell | 1.47e-10 | 28 |
secretory cell | 1.85e-08 | 36 |
Ontology term | p-value | n |
---|---|---|
cartilage tissue | 2.62e-23 | 3 |
skeletal tissue | 2.62e-23 | 3 |
stratified squamous epithelium | 4.09e-23 | 3 |
layer of synovial tissue | 4.09e-23 | 3 |
synovial joint | 4.09e-23 | 3 |
synovial membrane of synovial joint | 4.09e-23 | 3 |
articulation | 1.47e-09 | 8 |
skeletal joint | 1.47e-09 | 8 |
articular system | 1.47e-09 | 8 |
cavity lining | 8.38e-07 | 12 |
serous membrane | 8.38e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.23e-66 | 1 |
extraosseous chondrosarcoma | 1.23e-66 | 1 |
myxoid chondrosarcoma | 1.23e-66 | 1 |
extraskeletal myxoid chondrosarcoma | 1.23e-66 | 1 |
sarcoma | 2.58e-14 | 20 |
connective tissue cancer | 2.19e-12 | 6 |
musculoskeletal system cancer | 2.19e-12 | 6 |