FFCP PHASE1:Hg19::chr12:50479109..50479146,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:50479109..50479146,+
|short_description=p2@SMARCD1
|description=CAGE_peak_2_at_SMARCD1_5end
|association_with_transcript=0bp_to_ENST00000542914,ENST000005...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6602 | |EntrezGene=6602 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11106 | |HGNC=11106 | ||
|TSSclassifier=strong | |||
|UniProt=F5GY02,F8VUB0 | |UniProt=F5GY02,F8VUB0 | ||
|association_with_transcript=0bp_to_ENST00000542914,ENST00000547247,ENST00000547637,ENST00000550477_5end | |||
|cluster_id=chr12:50479109..50479146,+ | |||
|description=CAGE_peak_2_at_SMARCD1_5end | |||
|id=chr12:50479109..50479146,+ | |||
|ontology_enrichment_celltype=CL:0002319!6.95e-13!25;CL:0000066!1.53e-12!254;CL:0000133!7.27e-10!59;CL:0000221!3.04e-08!71;CL:0000095!3.87e-08!17;CL:0000123!3.87e-08!17;CL:0002321!1.61e-07!248;CL:0000243!5.39e-07!15;CL:0000125!5.39e-07!15;CL:0000030!5.39e-07!15;CL:0000339!5.39e-07!15;CL:0000220!5.56e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0002319;6.52e-13;25!CL:0000095;3.72e-08;17!CL:0000243;5.15e-07;15!CL:0000125;5.15e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,6.95e-13,25;CL:0000066,1.66e-12,253;CL:0000133,7.27e-10,59;CL:0000095,3.87e-08,17;CL:0000123,3.87e-08,17;CL:0000221,1.06e-07,72;CL:0002321,1.32e-07,250;CL:0000243,5.39e-07,15;CL:0000125,5.39e-07,15;CL:0000030,5.39e-07,15;CL:0000339,5.39e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000339;5.15e-07;15 | |||
|ontology_enrichment_disease=DOID:162!2.22e-15!235;DOID:14566!1.57e-14!239;DOID:0050687!3.51e-13!143;DOID:3095!3.04e-10!22;DOID:2994!3.04e-10!22;DOID:305!1.22e-07!106;DOID:0050686!5.35e-07!137 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.89e-10;22!DOID:2994;2.89e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.22e-15,235;DOID:14566,1.57e-14,239;DOID:0050687,3.51e-13,143;DOID:3095,3.04e-10,22;DOID:2994,3.04e-10,22;DOID:305,1.22e-07,106;DOID:0050686,5.35e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0000073!2.95e-08!94;UBERON:0001016!2.95e-08!94;UBERON:0000924!1.40e-07!173;UBERON:0006601!1.40e-07!173;UBERON:0005177!2.45e-07!107 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011216,1.04e-08,223;UBERON:0001016,5.90e-08,89;UBERON:0005177,3.09e-07,101;UBERON:0004121,4.23e-07,171;UBERON:0000924,4.23e-07,171;UBERON:0006601,4.23e-07,171 | |||
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| ||
|short_description=p2@SMARCD1 | |||
}} | }} |
Latest revision as of 18:11, 18 September 2015
Short description: | p2@SMARCD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SMARCD1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000542914, ENST00000547247, ENST00000547637, ENST00000550477_5end |
EntrezGene: | SMARCD1 |
HGNC: | 11106 |
UniProt: | F5GY02F8VUB0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 6.95e-13 | 25 |
epithelial cell | 1.66e-12 | 253 |
neurectodermal cell | 7.27e-10 | 59 |
neuron associated cell | 3.87e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 3.87e-08 | 17 |
ectodermal cell | 1.06e-07 | 72 |
embryonic cell | 1.32e-07 | 250 |
glial cell (sensu Vertebrata) | 5.39e-07 | 15 |
glial cell | 5.39e-07 | 15 |
glioblast | 5.39e-07 | 15 |
glioblast (sensu Vertebrata) | 5.39e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
organ system subdivision | 1.04e-08 | 223 |
nervous system | 5.90e-08 | 89 |
trunk region element | 3.09e-07 | 101 |
ectoderm-derived structure | 4.23e-07 | 171 |
ectoderm | 4.23e-07 | 171 |
presumptive ectoderm | 4.23e-07 | 171 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.22e-15 | 235 |
disease of cellular proliferation | 1.57e-14 | 239 |
cell type cancer | 3.51e-13 | 143 |
germ cell and embryonal cancer | 3.04e-10 | 22 |
germ cell cancer | 3.04e-10 | 22 |
carcinoma | 1.22e-07 | 106 |
organ system cancer | 5.35e-07 | 137 |