FFCP PHASE1:Hg19::chr1:152475755..152475761,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:152475755..152475761,+ | |||
|coexpression_cluster_id=C1300 | |||
|description=CAGE_peak_at_chr1:152475755..152475761,+ | |description=CAGE_peak_at_chr1:152475755..152475761,+ | ||
|id=chr1:152475755..152475761,+ | |id=chr1:152475755..152475761,+ | ||
|ontology_enrichment_celltype=CL:0002368!1.45e-20!13;CL:0002159!9.99e-20!13;CL:0002202!1.60e-17!9;CL:0002632!1.60e-17!9;CL:0000076!1.45e-15!62;CL:0000066!1.57e-15!254;CL:0000068!2.98e-14!3;CL:0000069!2.98e-14!3;CL:0000307!2.98e-14!3;CL:0000377!2.98e-14!3;CL:0002328!3.87e-14!3;CL:0002076!5.01e-14!43;CL:0000362!2.50e-13!8;CL:0000240!2.15e-11!6;CL:0000311!2.15e-11!6;CL:0000079!2.15e-11!6;CL:0000237!2.15e-11!6;CL:0000036!2.15e-11!6;CL:0000357!2.15e-11!6;CL:0000114!2.15e-11!6;CL:0000317!1.23e-09!2;CL:1000448!1.23e-09!2;CL:0002308!1.23e-09!2;CL:0002140!1.23e-09!2;CL:0000223!1.90e-09!59;CL:0002077!8.59e-09!33;CL:0000312!2.49e-08!5;CL:0000221!8.20e-07!71 | |ontology_enrichment_celltype=CL:0002368!1.45e-20!13;CL:0002159!9.99e-20!13;CL:0002202!1.60e-17!9;CL:0002632!1.60e-17!9;CL:0000076!1.45e-15!62;CL:0000066!1.57e-15!254;CL:0000068!2.98e-14!3;CL:0000069!2.98e-14!3;CL:0000307!2.98e-14!3;CL:0000377!2.98e-14!3;CL:0002328!3.87e-14!3;CL:0002076!5.01e-14!43;CL:0000362!2.50e-13!8;CL:0000240!2.15e-11!6;CL:0000311!2.15e-11!6;CL:0000079!2.15e-11!6;CL:0000237!2.15e-11!6;CL:0000036!2.15e-11!6;CL:0000357!2.15e-11!6;CL:0000114!2.15e-11!6;CL:0000317!1.23e-09!2;CL:1000448!1.23e-09!2;CL:0002308!1.23e-09!2;CL:0002140!1.23e-09!2;CL:0000223!1.90e-09!59;CL:0002077!8.59e-09!33;CL:0000312!2.49e-08!5;CL:0000221!8.20e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:0002202;1.04e-39;9!CL:0002632;1.04e-39;9!CL:0000307;1.36e-30;3!CL:0002328;1.98e-30;3!CL:0002368;1.10e-27;13!CL:0000244;9.36e-07;4!CL:0002327;9.36e-07;4!CL:0000731;9.36e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002202,9.90e-40,9;CL:0002632,9.90e-40,9;CL:0002328,1.47e-30,3;CL:0000068,1.71e-30,3;CL:0000069,1.71e-30,3;CL:0000307,1.71e-30,3;CL:0000377,1.71e-30,3;CL:0002368,1.07e-27,13;CL:0002076,7.05e-09,42;CL:0002327,8.61e-07,4;CL:0000066,8.89e-07,253;CL:0000244,9.11e-07,4;CL:0000731,9.11e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000377;1.36e-30;3 | |||
|ontology_enrichment_disease=DOID:1749!4.84e-23!14 | |ontology_enrichment_disease=DOID:1749!4.84e-23!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;3.04e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,3.14e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004815!3.87e-14!3;UBERON:0002031!3.87e-14!3;UBERON:0003729!1.30e-13!5;UBERON:0007196!5.21e-11!14;UBERON:0001558!5.21e-11!14;UBERON:0002185!1.04e-10!4;UBERON:0003343!2.86e-10!4;UBERON:0004785!2.86e-10!4;UBERON:0002419!1.23e-09!2;UBERON:0007771!1.23e-09!2;UBERON:0003297!1.23e-09!2;UBERON:0001821!1.23e-09!2;UBERON:0003487!1.23e-09!2;UBERON:0001820!1.23e-09!2;UBERON:0005089!1.23e-09!2;UBERON:0005088!1.23e-09!2;UBERON:0000344!2.41e-08!12;UBERON:0000065!1.33e-07!53;UBERON:0001003!1.78e-07!14;UBERON:0007376!1.78e-07!14;UBERON:0007383!1.78e-07!14;UBERON:0001004!2.93e-07!72;UBERON:0005178!6.44e-07!34;UBERON:0002224!6.44e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.98e-30;3!UBERON:0002031;1.98e-30;3!UBERON:0007196;4.54e-24;15!UBERON:0001558;4.54e-24;15!UBERON:0002185;1.04e-18;5!UBERON:0003126;9.84e-14;7!UBERON:0001005;9.84e-14;7!UBERON:0000485;1.15e-13;7!UBERON:0005178;6.20e-11;34!UBERON:0002224;6.20e-11;34!UBERON:0000072;6.02e-10;37!UBERON:0005181;2.64e-09;35!UBERON:0000065;8.99e-07;44!UBERON:0001911;9.36e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.47e-30,3;UBERON:0002031,1.47e-30,3;UBERON:0007196,4.41e-24,15;UBERON:0001558,4.41e-24,15;UBERON:0002185,8.66e-19,5;UBERON:0003126,1.08e-13,7;UBERON:0001005,1.08e-13,7;UBERON:0000485,6.87e-11,9;UBERON:0005178,7.00e-11,34;UBERON:0002224,7.00e-11,34;UBERON:0005181,1.40e-10,35;UBERON:0008947,8.93e-10,38;UBERON:0003258,8.93e-10,38;UBERON:0000072,5.73e-08,47;UBERON:0000915,3.12e-07,52;UBERON:0000065,5.64e-07,54;UBERON:0001911,8.61e-07,4;UBERON:0005333,8.61e-07,4;UBERON:0008425,8.61e-07,4;UBERON:0005311,8.61e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,2.75826367343678,0.6024118375565,2.58827807116751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.548751427043128,1.1240175325762,0.502644862058154,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0.141775097242386,0.53735113621709,1.74380363108377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0.893288987462089,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962221127255121,2.01090682660736,4.3556393944529,0,0,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27586896570999,0,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293977192243133,0.261177619741208,0,0.171986032471617,0,0,0,0,0,0,0.274083849293502,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392590874004102,0,0.917142992608395,0.577628330751691,0,0,0,0,0,0,0,0.655087670040387,0,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170426809518315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,2.75826367343678,0.6024118375565,2.58827807116751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.548751427043128,1.1240175325762,0.502644862058154,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0.141775097242386,0.53735113621709,1.74380363108377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0.893288987462089,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962221127255121,2.01090682660736,4.3556393944529,0,0,1.68471475667626,0,0,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27586896570999,0,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293977192243133,0.261177619741208,0,0.171986032471617,0,0,0,0,0,0,0.274083849293502,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392590874004102,0,0.917142992608395,0.577628330751691,0,0,0,0,0,0,0,0.655087670040387,0,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170426809518315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:152475755..152475761,+ | |short_description=p@chr1:152475755..152475761,+ | ||
}} | }} |
Latest revision as of 21:34, 27 July 2015
Short description: | p@chr1:152475755..152475761, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:152475755..152475761, + |
Coexpression cluster: | C1300_Tracheal_Bronchial_Small_Keratinocyte_Mammary_bronchial_Urothelial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of tracheobronchial tree | 9.90e-40 | 9 |
epithelial cell of lower respiratory tract | 9.90e-40 | 9 |
bronchial epithelial cell | 1.47e-30 | 3 |
duct epithelial cell | 1.71e-30 | 3 |
branched duct epithelial cell | 1.71e-30 | 3 |
tracheal epithelial cell | 1.71e-30 | 3 |
tracheoblast | 1.71e-30 | 3 |
respiratory epithelial cell | 1.07e-27 | 13 |
endo-epithelial cell | 7.05e-09 | 42 |
mammary gland epithelial cell | 8.61e-07 | 4 |
epithelial cell | 8.89e-07 | 253 |
transitional epithelial cell | 9.11e-07 | 4 |
urothelial cell | 9.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.47e-30 | 3 |
epithelium of bronchus | 1.47e-30 | 3 |
tracheobronchial tree | 4.41e-24 | 15 |
lower respiratory tract | 4.41e-24 | 15 |
bronchus | 8.66e-19 | 5 |
trachea | 1.08e-13 | 7 |
respiratory airway | 1.08e-13 | 7 |
simple columnar epithelium | 6.87e-11 | 9 |
thoracic cavity element | 7.00e-11 | 34 |
thoracic cavity | 7.00e-11 | 34 |
thoracic segment organ | 1.40e-10 | 35 |
respiratory primordium | 8.93e-10 | 38 |
endoderm of foregut | 8.93e-10 | 38 |
segment of respiratory tract | 5.73e-08 | 47 |
thoracic segment of trunk | 3.12e-07 | 52 |
respiratory tract | 5.64e-07 | 54 |
mammary gland | 8.61e-07 | 4 |
mammary bud | 8.61e-07 | 4 |
mammary ridge | 8.61e-07 | 4 |
mammary placode | 8.61e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.14e-07 | 14 |