FFCP PHASE1:Hg19::chr3:9291129..9291136,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9901 | |EntrezGene=9901 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19744 | |HGNC=19744 | ||
|TSSclassifier=strong | |||
|UniProt=O43295 | |UniProt=O43295 | ||
|association_with_transcript=-66bp_to_ENST00000383836_5end | |association_with_transcript=-66bp_to_ENST00000383836_5end | ||
|cluster_id=chr3:9291129..9291136,- | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_3_at_SRGAP3_5end | |description=CAGE_peak_3_at_SRGAP3_5end | ||
|id=chr3:9291129..9291136,- | |id=chr3:9291129..9291136,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000047;1.07e-17;2 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;4.06e-99;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.71e-48!57;UBERON:0005068!1.71e-48!57;UBERON:0006241!1.71e-48!57;UBERON:0007135!1.71e-48!57;UBERON:0001017!7.05e-41!82;UBERON:0005743!9.32e-41!86;UBERON:0002616!1.03e-40!59;UBERON:0007023!3.13e-38!115;UBERON:0000955!1.37e-37!69;UBERON:0006238!1.37e-37!69;UBERON:0003075!1.19e-36!86;UBERON:0007284!1.19e-36!86;UBERON:0000073!8.01e-36!94;UBERON:0001016!8.01e-36!94;UBERON:0002780!1.21e-34!41;UBERON:0001890!1.21e-34!41;UBERON:0006240!1.21e-34!41;UBERON:0002346!1.61e-34!90;UBERON:0003080!1.18e-33!42;UBERON:0000153!4.32e-32!129;UBERON:0007811!4.32e-32!129;UBERON:0000033!5.05e-31!123;UBERON:0001893!2.42e-30!34;UBERON:0002791!1.33e-28!33;UBERON:0002020!1.22e-27!34;UBERON:0003528!1.22e-27!34;UBERON:0003056!6.97e-27!61;UBERON:0001869!1.21e-26!32;UBERON:0004121!1.43e-26!169;UBERON:0000956!9.83e-26!25;UBERON:0000203!9.83e-26!25;UBERON:0000924!1.21e-25!173;UBERON:0006601!1.21e-25!173;UBERON:0002619!1.46e-23!22;UBERON:0001950!1.37e-19!20;UBERON:0003076!1.17e-15!15;UBERON:0003057!1.17e-15!15;UBERON:0000475!4.25e-12!365;UBERON:0004733!5.27e-10!12;UBERON:0002028!5.27e-10!12;UBERON:0007277!5.27e-10!12;UBERON:0004111!5.84e-10!241;UBERON:0000200!1.21e-09!6;UBERON:0000477!2.00e-09!286;UBERON:0004732!3.87e-09!13;UBERON:0000483!4.48e-09!309;UBERON:0000119!7.23e-09!312;UBERON:0000025!8.93e-09!194;UBERON:0000064!2.18e-08!219;UBERON:0000349!2.42e-08!5;UBERON:0002240!2.49e-08!3;UBERON:0001872!4.12e-08!5;UBERON:0000062!4.86e-08!511;UBERON:0002771!8.99e-08!3;UBERON:0002298!1.10e-07!8;UBERON:0000481!1.13e-07!347;UBERON:0001871!1.95e-07!7;UBERON:0002680!2.98e-07!9;UBERON:0001895!2.98e-07!9;UBERON:0010092!2.98e-07!9;UBERON:0000922!8.73e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;3.84e-50;6!UBERON:0004733;2.27e-44;12!UBERON:0002028;2.27e-44;12!UBERON:0004732;5.03e-41;13!UBERON:0002680;8.87e-34;9!UBERON:0001895;8.87e-34;9!UBERON:0001896;2.89e-12;3!UBERON:0001723;2.89e-12;3!UBERON:0001033;2.89e-12;3!UBERON:0005290;2.89e-12;3!UBERON:0001016;6.31e-08;83!UBERON:0000073;6.33e-08;53!UBERON:0002616;6.33e-08;53!UBERON:0002298;8.97e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,3.84e-50,6;UBERON:0006215,3.84e-50,6;UBERON:0004733,2.27e-44,12;UBERON:0002028,2.27e-44,12;UBERON:0007277,2.27e-44,12;UBERON:0004732,5.03e-41,13;UBERON:0003076,1.14e-35,15;UBERON:0003057,1.14e-35,15;UBERON:0002680,8.87e-34,9;UBERON:0001895,8.87e-34,9;UBERON:0010092,8.87e-34,9;UBERON:0001896,2.89e-12,3;UBERON:0005290,2.89e-12,3;UBERON:0010096,2.89e-12,3;UBERON:0001723,3.24e-12,3;UBERON:0001033,3.24e-12,3;UBERON:0010056,3.24e-12,3;UBERON:0001017,2.00e-10,81;UBERON:0000073,2.17e-10,53;UBERON:0002616,2.17e-10,53;UBERON:0001049,7.17e-10,56;UBERON:0005068,7.17e-10,56;UBERON:0006241,7.17e-10,56;UBERON:0007135,7.17e-10,56;UBERON:0001016,1.91e-09,89;UBERON:0000955,3.92e-08,68;UBERON:0006238,3.92e-08,68;UBERON:0004121,3.21e-07,171;UBERON:0000924,3.21e-07,171;UBERON:0006601,3.21e-07,171;UBERON:0003075,6.23e-07,82;UBERON:0007284,6.23e-07,82;UBERON:0002298,8.97e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0.728590576585084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77866236955724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246381468041427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0.382838137483752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.556608588971108,0,0,0,0,0,0,0,0,0,0,0,0,6.10326945268333,10.0627126537414,2.65992857058193,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0.471807930864739,0.802577647298789,0.468528891450678,0,0,0,0,0,0,0.252746318513952,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.90392296312213,0,0,0.316553979779393,0,0,0,0,0,0,0.343189995723929,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.408610218334727,0,0,0,0,0,0.789744236554321,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.488105059607853,0.250381861413,0,1.10929051536852,0.372578417648301,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0.478901577171454,0.205116364240755,0,0.207471757392654,0.161475645631851,0,0,0.11796972334774,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.202612753855184,0,0.206686796501184,0.570742291745161,0.546974809018219,0,0,0,0.127762427639595,0,0.336283722218824,0,0,0,0.115233987555779,0,0.203909198930495,0.197318320688547,0,0,0.078493092850514,0,0,0,0,0,0.714765441766563,0,0,0,0.801711364730253,0.62164849248911,0,0,0.860454717640555,0,0,0,0,0,0,0,0,0,0.647428837187895,0.718639647993729,0,0.485710993059139,0.233939463462106,0,0,0,0,0.754814217833368,0,0,0,0,0,0.196308467114945,0.594092800654172,0.8453114551668,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.475940431336403,0.436350690340377,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0.829169439458779,0.103432995861895,0,0.476128862927481,0,0.0620747142958579,0,0.0636471582781649,0.404234377916439,0.217716747896961,1.02669990325584,0.134704106029175,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0.728590576585084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77866236955724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246381468041427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0.382838137483752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.556608588971108,0,0,0,0,0,0,0,0,0,0,0,0,6.10326945268333,10.0627126537414,2.65992857058193,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0.471807930864739,0.802577647298789,0.468528891450678,0,0,0,0,0,0,0.252746318513952,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.90392296312213,0,0,0.316553979779393,0,0,0,0,0,0,0.343189995723929,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.408610218334727,0,0,0,0,0,0.789744236554321,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.488105059607853,0.250381861413,0,1.10929051536852,0.372578417648301,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0.478901577171454,0.205116364240755,0,0.207471757392654,0.161475645631851,0,0,0.11796972334774,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.202612753855184,0,0.206686796501184,0.570742291745161,0.546974809018219,0,0,0,0.127762427639595,0,0.336283722218824,0,0,0,0.115233987555779,0,0.203909198930495,0.197318320688547,0,0,0.078493092850514,0,0,0,0,0,0.714765441766563,0,0,0,0.801711364730253,0.62164849248911,0,0,0.860454717640555,0,0,0,0,0,0,0,0,0,0.647428837187895,0.718639647993729,0,0.485710993059139,0.233939463462106,0,0,0,0,0.754814217833368,0,0,0,0,0,0.196308467114945,0.594092800654172,0.8453114551668,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.475940431336403,0.436350690340377,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0.829169439458779,0.103432995861895,0,0.476128862927481,0,0.0620747142958579,0,0.0636471582781649,0.404234377916439,0.217716747896961,1.02669990325584,0.134704106029175,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@SRGAP3 | |short_description=p3@SRGAP3 | ||
}} | }} |
Latest revision as of 19:37, 19 September 2015
Short description: | p3@SRGAP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SRGAP3_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -66bp_to_ENST00000383836_5end |
EntrezGene: | SRGAP3 |
HGNC: | 19744 |
UniProt: | O43295 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 3.84e-50 | 6 |
rhombic lip | 3.84e-50 | 6 |
segmental subdivision of hindbrain | 2.27e-44 | 12 |
hindbrain | 2.27e-44 | 12 |
presumptive hindbrain | 2.27e-44 | 12 |
segmental subdivision of nervous system | 5.03e-41 | 13 |
posterior neural tube | 1.14e-35 | 15 |
chordal neural plate | 1.14e-35 | 15 |
regional part of metencephalon | 8.87e-34 | 9 |
metencephalon | 8.87e-34 | 9 |
future metencephalon | 8.87e-34 | 9 |
medulla oblongata | 2.89e-12 | 3 |
myelencephalon | 2.89e-12 | 3 |
future myelencephalon | 2.89e-12 | 3 |
tongue | 3.24e-12 | 3 |
gustatory system | 3.24e-12 | 3 |
future tongue | 3.24e-12 | 3 |
central nervous system | 2.00e-10 | 81 |
regional part of nervous system | 2.17e-10 | 53 |
regional part of brain | 2.17e-10 | 53 |
neural tube | 7.17e-10 | 56 |
neural rod | 7.17e-10 | 56 |
future spinal cord | 7.17e-10 | 56 |
neural keel | 7.17e-10 | 56 |
nervous system | 1.91e-09 | 89 |
brain | 3.92e-08 | 68 |
future brain | 3.92e-08 | 68 |
ectoderm-derived structure | 3.21e-07 | 171 |
ectoderm | 3.21e-07 | 171 |
presumptive ectoderm | 3.21e-07 | 171 |
neural plate | 6.23e-07 | 82 |
presumptive neural plate | 6.23e-07 | 82 |
brainstem | 8.97e-07 | 6 |