FFCP PHASE1:Hg19::chr12:123560474..123560567,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:123560474..123560567,-
|short_description=p3@PITPNM2
|description=CAGE_peak_3_at_PITPNM2_5end
|association_with_transcript=74bp_to_ENST00000541244_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57605 | |EntrezGene=57605 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21044 | |HGNC=21044 | ||
|TSSclassifier=strong | |||
|UniProt=F5H361 | |UniProt=F5H361 | ||
|association_with_transcript=74bp_to_ENST00000541244_5end | |||
|cluster_id=chr12:123560474..123560567,- | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_3_at_PITPNM2_5end | |||
|id=chr12:123560474..123560567,- | |||
|ontology_enrichment_celltype=CL:0000791!9.77e-23!18;CL:0000789!9.77e-23!18;CL:0002420!9.77e-23!18;CL:0002419!9.77e-23!18;CL:0000790!9.77e-23!18;CL:0000542!5.76e-22!53;CL:0000051!5.76e-22!53;CL:0000838!4.80e-21!52;CL:0000084!3.28e-18!25;CL:0000827!3.28e-18!25;CL:0000625!1.36e-14!11;CL:0000738!9.31e-12!140;CL:0002087!1.92e-09!119;CL:0000624!6.68e-09!6;CL:0000037!7.24e-08!172;CL:0000566!7.24e-08!172;CL:0002031!3.67e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.57e-37;18!CL:0000789;1.57e-37;18!CL:0002419;1.57e-37;18!CL:0000084;2.33e-29;25!CL:0000625;1.37e-24;11!CL:0000624;4.34e-17;6!CL:0000542;2.88e-15;53!CL:0000623;2.46e-10;3!CL:0000226;1.35e-09;3!CL:0000842;1.35e-09;3!CL:0000898;2.12e-09;3!CL:0000767;7.74e-09;3!CL:0000815;5.31e-07;2!CL:0000792;5.31e-07;2!CL:0002677;5.31e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.93e-37,18;CL:0000789,1.93e-37,18;CL:0002420,1.93e-37,18;CL:0002419,1.93e-37,18;CL:0000790,1.93e-37,18;CL:0000542,1.74e-29,53;CL:0000051,1.74e-29,53;CL:0000084,2.52e-29,25;CL:0000827,2.52e-29,25;CL:0000838,8.60e-28,52;CL:0000625,1.84e-24,11;CL:0000624,3.93e-17,6;CL:0000738,2.67e-16,136;CL:0002087,2.22e-15,115;CL:0000037,1.45e-11,168;CL:0000988,1.48e-10,177;CL:0000623,2.54e-10,3;CL:0000825,2.54e-10,3;CL:0002031,4.36e-10,120;CL:0000226,1.48e-09,3;CL:0000842,1.48e-09,3;CL:0000898,1.98e-09,3;CL:0000767,6.92e-09,3;CL:0002032,9.11e-09,161;CL:0000837,9.11e-09,161;CL:0000815,4.38e-07,2;CL:0000792,4.38e-07,2;CL:0002677,4.38e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;1.57e-37;18!CL:0000051;2.88e-15;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.77e-15!115;UBERON:0000178!4.61e-12!15;UBERON:0000179!4.61e-12!15;UBERON:0000463!4.61e-12!15;UBERON:0004177!4.19e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.31e-25;15!UBERON:0000179;2.31e-25;15!UBERON:0000463;2.31e-25;15!UBERON:0002390;1.17e-15;32!UBERON:0002193;7.69e-11;42!UBERON:0002370;1.00e-07;2!UBERON:0005058;1.00e-07;2!UBERON:0009113;1.00e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.65e-25,15;UBERON:0000179,2.65e-25,15;UBERON:0000463,2.65e-25,15;UBERON:0002370,1.29e-07,4;UBERON:0005058,1.29e-07,4;UBERON:0009113,1.29e-07,4;UBERON:0003295,1.29e-07,4;UBERON:0005562,1.29e-07,4;UBERON:0004177,4.54e-07,7;UBERON:0005057,4.54e-07,7 | |||
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| ||
|short_description=p3@PITPNM2 | |||
}} | }} |
Latest revision as of 01:19, 17 September 2015
Short description: | p3@PITPNM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PITPNM2_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | 74bp_to_ENST00000541244_5end |
EntrezGene: | PITPNM2 |
HGNC: | 21044 |
UniProt: | F5H361 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.93e-37 | 18 |
alpha-beta T cell | 1.93e-37 | 18 |
immature T cell | 1.93e-37 | 18 |
mature T cell | 1.93e-37 | 18 |
immature alpha-beta T cell | 1.93e-37 | 18 |
lymphocyte | 1.74e-29 | 53 |
common lymphoid progenitor | 1.74e-29 | 53 |
T cell | 2.52e-29 | 25 |
pro-T cell | 2.52e-29 | 25 |
lymphoid lineage restricted progenitor cell | 8.60e-28 | 52 |
CD8-positive, alpha-beta T cell | 1.84e-24 | 11 |
CD4-positive, alpha-beta T cell | 3.93e-17 | 6 |
leukocyte | 2.67e-16 | 136 |
nongranular leukocyte | 2.22e-15 | 115 |
hematopoietic stem cell | 1.45e-11 | 168 |
hematopoietic cell | 1.48e-10 | 177 |
natural killer cell | 2.54e-10 | 3 |
pro-NK cell | 2.54e-10 | 3 |
hematopoietic lineage restricted progenitor cell | 4.36e-10 | 120 |
single nucleate cell | 1.48e-09 | 3 |
mononuclear cell | 1.48e-09 | 3 |
naive T cell | 1.98e-09 | 3 |
basophil | 6.92e-09 | 3 |
hematopoietic oligopotent progenitor cell | 9.11e-09 | 161 |
hematopoietic multipotent progenitor cell | 9.11e-09 | 161 |
regulatory T cell | 4.38e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 4.38e-07 | 2 |
naive regulatory T cell | 4.38e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 2.65e-25 | 15 |
haemolymphatic fluid | 2.65e-25 | 15 |
organism substance | 2.65e-25 | 15 |
thymus | 1.29e-07 | 4 |
hemolymphoid system gland | 1.29e-07 | 4 |
thymic region | 1.29e-07 | 4 |
pharyngeal gland | 1.29e-07 | 4 |
thymus primordium | 1.29e-07 | 4 |
hemopoietic organ | 4.54e-07 | 7 |
immune organ | 4.54e-07 | 7 |