FFCP PHASE1:Hg19::chr19:1905365..1905411,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=113178,113179 | |EntrezGene=113178,113179 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30385,25151 | |HGNC=30385,25151 | ||
|TSSclassifier=strong | |||
|UniProt=Q969E2,F8WDW4 | |UniProt=Q969E2,F8WDW4 | ||
|association_with_transcript=0bp_to_ENST00000316097,ENST00000409472,ENST00000414057,ENST00000452128,ENST00000460767,ENST00000489554,NM_079834,uc002luh.2,uc002lui.1,uc002luj.2,uc002luk.2,uc010dss.2_5end | |association_with_transcript=0bp_to_ENST00000316097,ENST00000409472,ENST00000414057,ENST00000452128,ENST00000460767,ENST00000489554,NM_079834,uc002luh.2,uc002lui.1,uc002luj.2,uc002luk.2,uc010dss.2_5end | ||
|cluster_id=chr19:1905365..1905411,+ | |||
|coexpression_cluster_id=C1811 | |||
|description=CAGE_peak_1_at_ADAT3_5end,CAGE_peak_1_at_SCAMP4_5end | |description=CAGE_peak_1_at_ADAT3_5end,CAGE_peak_1_at_SCAMP4_5end | ||
|id=chr19:1905365..1905411,+ | |id=chr19:1905365..1905411,+ | ||
|ontology_enrichment_celltype=CL:0000144!1.62e-21!625;CL:0000220!1.46e-20!246;CL:0002321!3.02e-20!248;CL:0002371!9.05e-20!591;CL:0000222!6.22e-19!119;CL:0000055!4.08e-16!180;CL:0000548!4.30e-16!679;CL:0000004!4.30e-16!679;CL:0000255!4.30e-16!679;CL:0000012!4.78e-15!682;CL:0000183!1.43e-10!59;CL:0000213!4.36e-10!57;CL:0000215!4.36e-10!57;CL:0000192!2.74e-09!42;CL:0000514!2.74e-09!42;CL:0000003!9.92e-09!722;CL:0000680!1.13e-08!57;CL:0000056!1.13e-08!57;CL:0000355!1.13e-08!57;CL:0000187!1.95e-08!54;CL:1000449!1.98e-08!16;CL:0002078!2.27e-08!44;CL:0000115!3.44e-08!35;CL:0000393!2.37e-07!60;CL:0000211!2.37e-07!60;CL:0000057!3.13e-07!75;CL:1000507!3.75e-07!12;CL:1000494!3.75e-07!12;CL:0002681!5.46e-07!13;CL:0002584!5.46e-07!13;CL:0000359!6.56e-07!32;CL:0000066!7.82e-07!254;CL:1000497!8.10e-07!18;CL:0002518!8.10e-07!18 | |ontology_enrichment_celltype=CL:0000144!1.62e-21!625;CL:0000220!1.46e-20!246;CL:0002321!3.02e-20!248;CL:0002371!9.05e-20!591;CL:0000222!6.22e-19!119;CL:0000055!4.08e-16!180;CL:0000548!4.30e-16!679;CL:0000004!4.30e-16!679;CL:0000255!4.30e-16!679;CL:0000012!4.78e-15!682;CL:0000183!1.43e-10!59;CL:0000213!4.36e-10!57;CL:0000215!4.36e-10!57;CL:0000192!2.74e-09!42;CL:0000514!2.74e-09!42;CL:0000003!9.92e-09!722;CL:0000680!1.13e-08!57;CL:0000056!1.13e-08!57;CL:0000355!1.13e-08!57;CL:0000187!1.95e-08!54;CL:1000449!1.98e-08!16;CL:0002078!2.27e-08!44;CL:0000115!3.44e-08!35;CL:0000393!2.37e-07!60;CL:0000211!2.37e-07!60;CL:0000057!3.13e-07!75;CL:1000507!3.75e-07!12;CL:1000494!3.75e-07!12;CL:0002681!5.46e-07!13;CL:0002584!5.46e-07!13;CL:0000359!6.56e-07!32;CL:0000066!7.82e-07!254;CL:1000497!8.10e-07!18;CL:0002518!8.10e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:1000449;1.96e-08;15!CL:0000115;2.35e-07;36!CL:0000192;2.99e-07;43!CL:0002681;5.44e-07;12!CL:0002584;5.44e-07;12!CL:1000507;6.31e-07;10!CL:1000494;6.31e-07;10!CL:1000497;8.78e-07;17!CL:0002518;8.78e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.07e-20,250;CL:0000222,2.25e-19,121;CL:0000213,2.27e-10,58;CL:0000215,2.27e-10,58;CL:0000192,2.16e-09,43;CL:0000514,2.16e-09,43;CL:0000680,8.63e-09,58;CL:0000056,8.63e-09,58;CL:0000355,8.63e-09,58;CL:0002078,1.19e-08,45;CL:0000187,1.50e-08,55;CL:0000115,1.77e-08,36;CL:1000449,1.95e-08,15;CL:0000393,1.82e-07,61;CL:0000211,1.82e-07,61;CL:0002681,5.42e-07,12;CL:0002584,5.42e-07,12;CL:0000057,6.30e-07,76;CL:1000507,6.35e-07,10;CL:1000494,6.35e-07,10;CL:0000359,6.56e-07,32;CL:1000497,9.30e-07,17;CL:0002518,9.30e-07,17;CL:0000066,9.74e-07,253 | |||
|ontology_enrichment_development_v019=CL:0000514;2.99e-07;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!1.38e-13!659;UBERON:0000119!4.55e-13!312;UBERON:0000483!2.72e-12!309;UBERON:0003914!1.51e-11!118;UBERON:0000475!3.58e-11!365;UBERON:0000467!6.69e-11!625;UBERON:0000480!7.83e-11!626;UBERON:0000923!2.17e-10!604;UBERON:0005291!2.17e-10!604;UBERON:0006598!2.17e-10!604;UBERON:0002532!2.17e-10!604;UBERON:0002049!2.21e-10!79;UBERON:0007798!2.21e-10!79;UBERON:0002050!3.08e-10!605;UBERON:0005423!3.08e-10!605;UBERON:0005256!4.50e-10!143;UBERON:0000922!7.57e-10!612;UBERON:0000486!3.30e-09!82;UBERON:0000055!5.97e-09!69;UBERON:0004872!1.30e-08!84;UBERON:0004211!1.98e-08!16;UBERON:0001285!1.98e-08!16;UBERON:0007684!1.98e-08!16;UBERON:0003220!1.98e-08!16;UBERON:0004208!1.98e-08!16;UBERON:0000490!2.42e-08!138;UBERON:0006555!2.66e-08!17;UBERON:0005103!2.66e-08!17;UBERON:0000083!2.66e-08!17;UBERON:0009201!2.66e-08!17;UBERON:0004819!2.66e-08!17;UBERON:0006553!2.66e-08!17;UBERON:0003074!2.66e-08!17;UBERON:0003060!2.66e-08!17;UBERON:0002100!3.24e-08!216;UBERON:0004111!4.44e-08!241;UBERON:0000080!4.79e-08!18;UBERON:0002120!4.79e-08!18;UBERON:0004875!4.79e-08!18;UBERON:0005721!4.79e-08!18;UBERON:0005754!4.79e-08!18;UBERON:0007297!4.79e-08!18;UBERON:0001637!6.04e-08!42;UBERON:0003509!6.04e-08!42;UBERON:0004572!6.04e-08!42;UBERON:0004290!1.70e-07!70;UBERON:0004876!1.79e-07!20;UBERON:0000914!2.42e-07!83;UBERON:0002329!2.42e-07!83;UBERON:0003077!2.42e-07!83;UBERON:0003059!2.42e-07!83;UBERON:0007282!2.42e-07!83;UBERON:0009618!2.42e-07!83;UBERON:0007285!2.42e-07!83;UBERON:0001981!2.62e-07!60;UBERON:0007500!2.62e-07!60;UBERON:0004537!2.62e-07!60;UBERON:0006965!2.62e-07!60;UBERON:0000353!3.03e-07!17;UBERON:0009773!3.75e-07!12;UBERON:0001231!3.75e-07!12;UBERON:0004810!3.75e-07!12;UBERON:0001225!5.46e-07!13;UBERON:0008987!5.46e-07!13;UBERON:0000058!5.69e-07!26;UBERON:0006554!7.25e-07!44;UBERON:0000025!7.34e-07!194 | |ontology_enrichment_uberon=UBERON:0000468!1.38e-13!659;UBERON:0000119!4.55e-13!312;UBERON:0000483!2.72e-12!309;UBERON:0003914!1.51e-11!118;UBERON:0000475!3.58e-11!365;UBERON:0000467!6.69e-11!625;UBERON:0000480!7.83e-11!626;UBERON:0000923!2.17e-10!604;UBERON:0005291!2.17e-10!604;UBERON:0006598!2.17e-10!604;UBERON:0002532!2.17e-10!604;UBERON:0002049!2.21e-10!79;UBERON:0007798!2.21e-10!79;UBERON:0002050!3.08e-10!605;UBERON:0005423!3.08e-10!605;UBERON:0005256!4.50e-10!143;UBERON:0000922!7.57e-10!612;UBERON:0000486!3.30e-09!82;UBERON:0000055!5.97e-09!69;UBERON:0004872!1.30e-08!84;UBERON:0004211!1.98e-08!16;UBERON:0001285!1.98e-08!16;UBERON:0007684!1.98e-08!16;UBERON:0003220!1.98e-08!16;UBERON:0004208!1.98e-08!16;UBERON:0000490!2.42e-08!138;UBERON:0006555!2.66e-08!17;UBERON:0005103!2.66e-08!17;UBERON:0000083!2.66e-08!17;UBERON:0009201!2.66e-08!17;UBERON:0004819!2.66e-08!17;UBERON:0006553!2.66e-08!17;UBERON:0003074!2.66e-08!17;UBERON:0003060!2.66e-08!17;UBERON:0002100!3.24e-08!216;UBERON:0004111!4.44e-08!241;UBERON:0000080!4.79e-08!18;UBERON:0002120!4.79e-08!18;UBERON:0004875!4.79e-08!18;UBERON:0005721!4.79e-08!18;UBERON:0005754!4.79e-08!18;UBERON:0007297!4.79e-08!18;UBERON:0001637!6.04e-08!42;UBERON:0003509!6.04e-08!42;UBERON:0004572!6.04e-08!42;UBERON:0004290!1.70e-07!70;UBERON:0004876!1.79e-07!20;UBERON:0000914!2.42e-07!83;UBERON:0002329!2.42e-07!83;UBERON:0003077!2.42e-07!83;UBERON:0003059!2.42e-07!83;UBERON:0007282!2.42e-07!83;UBERON:0009618!2.42e-07!83;UBERON:0007285!2.42e-07!83;UBERON:0001981!2.62e-07!60;UBERON:0007500!2.62e-07!60;UBERON:0004537!2.62e-07!60;UBERON:0006965!2.62e-07!60;UBERON:0000353!3.03e-07!17;UBERON:0009773!3.75e-07!12;UBERON:0001231!3.75e-07!12;UBERON:0004810!3.75e-07!12;UBERON:0001225!5.46e-07!13;UBERON:0008987!5.46e-07!13;UBERON:0000058!5.69e-07!26;UBERON:0006554!7.25e-07!44;UBERON:0000025!7.34e-07!194 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.96e-08;15!UBERON:0004819;1.96e-08;15!UBERON:0001285;1.96e-08;15!UBERON:0007684;1.96e-08;15!UBERON:0000353;4.04e-08;15!UBERON:0003914;1.44e-07;74!UBERON:0001225;5.44e-07;12!UBERON:0008987;5.44e-07;12!UBERON:0004211;6.31e-07;10!UBERON:0009773;6.31e-07;10!UBERON:0001231;6.31e-07;10!UBERON:0004810;6.31e-07;10 | |||
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| ||
|short_description=p1@ADAT3,p1@SCAMP4 | |short_description=p1@ADAT3,p1@SCAMP4 | ||
}} | }} |
Latest revision as of 19:04, 16 September 2015
Short description: | p1@ADAT3, p1@SCAMP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ADAT3_5end, CAGE_peak_1_at_SCAMP4_5end |
Coexpression cluster: | C1811_Mesenchymal_Alveolar_Pericytes_Placental_Renal_Melanocyte_Fibroblast |
Association with transcript: | 0bp_to_ENST00000316097, ENST00000409472, ENST00000414057, ENST00000452128, ENST00000460767, ENST00000489554, NM_079834, uc002luh.2, uc002lui.1, uc002luj.2, uc002luk.2, uc010dss.2_5end |
EntrezGene: | 113178,113179 |
HGNC: | 25151&submit=Submit 30385, 25151 |
UniProt: | Q969E2F8WDW4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.07e-20 | 250 |
mesodermal cell | 2.25e-19 | 121 |
lining cell | 2.27e-10 | 58 |
barrier cell | 2.27e-10 | 58 |
smooth muscle cell | 2.16e-09 | 43 |
smooth muscle myoblast | 2.16e-09 | 43 |
muscle precursor cell | 8.63e-09 | 58 |
myoblast | 8.63e-09 | 58 |
multi-potent skeletal muscle stem cell | 8.63e-09 | 58 |
meso-epithelial cell | 1.19e-08 | 45 |
muscle cell | 1.50e-08 | 55 |
endothelial cell | 1.77e-08 | 36 |
epithelial cell of nephron | 1.95e-08 | 15 |
electrically responsive cell | 1.82e-07 | 61 |
electrically active cell | 1.82e-07 | 61 |
kidney cortical cell | 5.42e-07 | 12 |
renal cortical epithelial cell | 5.42e-07 | 12 |
fibroblast | 6.30e-07 | 76 |
kidney tubule cell | 6.35e-07 | 10 |
nephron tubule epithelial cell | 6.35e-07 | 10 |
vascular associated smooth muscle cell | 6.56e-07 | 32 |
kidney cell | 9.30e-07 | 17 |
kidney epithelial cell | 9.30e-07 | 17 |
epithelial cell | 9.74e-07 | 253 |