FFCP PHASE1:Hg19::chr2:20251339..20251367,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9741 | |EntrezGene=9741 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6924 | |HGNC=6924 | ||
|TSSclassifier=strong | |||
|UniProt=Q15012,Q6IBP4 | |UniProt=Q15012,Q6IBP4 | ||
|association_with_transcript=421bp_to_ENST00000175091,NM_014713,uc002rdm.2,uc002rdn.2,uc010yjx.1_5end | |association_with_transcript=421bp_to_ENST00000175091,NM_014713,uc002rdm.2,uc002rdn.2,uc010yjx.1_5end | ||
|cluster_id=chr2:20251339..20251367,- | |||
|coexpression_cluster_id=C4173 | |||
|description=CAGE_peak_3_at_LAPTM4A_5end | |description=CAGE_peak_3_at_LAPTM4A_5end | ||
|id=chr2:20251339..20251367,- | |id=chr2:20251339..20251367,- | ||
|ontology_enrichment_celltype=CL:0000048!3.55e-15!430;CL:0000055!5.46e-15!180;CL:0000034!5.13e-14!444;CL:0000723!5.92e-14!436;CL:0000144!3.41e-11!625;CL:0002371!6.27e-11!591;CL:0000057!1.52e-09!75;CL:0002320!1.95e-09!365;CL:0000136!7.82e-09!15;CL:0000134!2.19e-08!358;CL:0000219!6.28e-07!390;CL:0000499!6.45e-07!27;CL:0000680!6.81e-07!57;CL:0000056!6.81e-07!57;CL:0000355!6.81e-07!57 | |ontology_enrichment_celltype=CL:0000048!3.55e-15!430;CL:0000055!5.46e-15!180;CL:0000034!5.13e-14!444;CL:0000723!5.92e-14!436;CL:0000144!3.41e-11!625;CL:0002371!6.27e-11!591;CL:0000057!1.52e-09!75;CL:0002320!1.95e-09!365;CL:0000136!7.82e-09!15;CL:0000134!2.19e-08!358;CL:0000219!6.28e-07!390;CL:0000499!6.45e-07!27;CL:0000680!6.81e-07!57;CL:0000056!6.81e-07!57;CL:0000355!6.81e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0000136;4.74e-08;13!CL:0000134;1.75e-07;55!CL:0000349;3.77e-07;19!CL:0000723;3.80e-07;61!CL:0000048;4.90e-07;58!CL:0000499;6.22e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,3.05e-16,427;CL:0000034,4.95e-15,441;CL:0000723,5.71e-15,433;CL:0002320,5.35e-10,361;CL:0000057,1.26e-09,76;CL:0000134,6.49e-09,354;CL:0000136,7.82e-09,15;CL:0000219,2.20e-07,386;CL:0000680,2.79e-07,58;CL:0000056,2.79e-07,58;CL:0000355,2.79e-07,58;CL:0000349,3.95e-07,19;CL:0000499,5.76e-07,28 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!3.33e-12!448;UBERON:0004120!3.33e-12!448;UBERON:0006603!3.33e-12!448;UBERON:0002204!8.67e-11!167;UBERON:0000468!3.85e-10!659;UBERON:0002384!1.63e-09!375;UBERON:0005631!2.21e-07!14;UBERON:0000158!2.21e-07!14;UBERON:0001013!4.33e-07!14;UBERON:0002385!6.41e-07!63;UBERON:0001015!6.41e-07!63;UBERON:0000383!6.41e-07!63;UBERON:0000467!6.52e-07!625;UBERON:0001134!6.65e-07!61;UBERON:0002036!6.65e-07!61;UBERON:0003082!6.65e-07!61;UBERON:0000914!8.61e-07!83;UBERON:0002329!8.61e-07!83;UBERON:0003077!8.61e-07!83;UBERON:0003059!8.61e-07!83;UBERON:0007282!8.61e-07!83;UBERON:0009618!8.61e-07!83;UBERON:0007285!8.61e-07!83;UBERON:0003081!8.68e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;4.37e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,6.12e-18,315;UBERON:0004120,6.12e-18,315;UBERON:0006603,6.12e-18,315;UBERON:0002204,2.39e-12,167;UBERON:0002384,4.48e-10,371;UBERON:0000479,2.17e-08,773;UBERON:0005631,2.21e-07,14;UBERON:0000158,2.21e-07,14;UBERON:0002385,2.70e-07,64;UBERON:0001015,2.70e-07,64;UBERON:0000383,2.70e-07,64;UBERON:0001134,2.78e-07,62;UBERON:0002036,2.78e-07,62;UBERON:0003082,2.78e-07,62;UBERON:0001013,4.33e-07,14;UBERON:0003081,4.91e-07,203 | |||
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| ||
|short_description=p3@LAPTM4A | |short_description=p3@LAPTM4A | ||
}} | }} |
Latest revision as of 13:37, 19 September 2015
Short description: | p3@LAPTM4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LAPTM4A_5end |
Coexpression cluster: | C4173_Smooth_mesenchymal_amniotic_tenocyte_ductus_seminal_Synoviocyte |
Association with transcript: | 421bp_to_ENST00000175091, NM_014713, uc002rdm.2, uc002rdn.2, uc010yjx.1_5end |
EntrezGene: | LAPTM4A |
HGNC: | 6924 |
UniProt: | Q15012Q6IBP4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 3.05e-16 | 427 |
stem cell | 4.95e-15 | 441 |
somatic stem cell | 5.71e-15 | 433 |
connective tissue cell | 5.35e-10 | 361 |
fibroblast | 1.26e-09 | 76 |
mesenchymal cell | 6.49e-09 | 354 |
fat cell | 7.82e-09 | 15 |
motile cell | 2.20e-07 | 386 |
muscle precursor cell | 2.79e-07 | 58 |
myoblast | 2.79e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.79e-07 | 58 |
extraembryonic cell | 3.95e-07 | 19 |
stromal cell | 5.76e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 6.12e-18 | 315 |
mesoderm-derived structure | 6.12e-18 | 315 |
presumptive mesoderm | 6.12e-18 | 315 |
musculoskeletal system | 2.39e-12 | 167 |
connective tissue | 4.48e-10 | 371 |
tissue | 2.17e-08 | 773 |
extraembryonic membrane | 2.21e-07 | 14 |
membranous layer | 2.21e-07 | 14 |
muscle tissue | 2.70e-07 | 64 |
musculature | 2.70e-07 | 64 |
musculature of body | 2.70e-07 | 64 |
skeletal muscle tissue | 2.78e-07 | 62 |
striated muscle tissue | 2.78e-07 | 62 |
myotome | 2.78e-07 | 62 |
adipose tissue | 4.33e-07 | 14 |
lateral plate mesoderm | 4.91e-07 | 203 |