FFCP PHASE1:Hg19::chr12:104760413..104760416,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:104760413..104760416,+
|short_description=p@chr12:104760413..104760416,+
|description=CAGE_peak_at_chr12:104760413..104760416,+
|association_with_transcri...") |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:104760413..104760416,+ | |||
|description=CAGE_peak_at_chr12:104760413..104760416,+ | |||
|id=chr12:104760413..104760416,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000082;9.09e-11;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000082,9.63e-11,19;CL:0000066,9.20e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0001041;1.09e-14;30!UBERON:0008947;7.38e-07;29 | |||
|ontology_enrichment_disease=DOID:162!3.44e-29!235;DOID:0050687!4.77e-28!143;DOID:14566!8.05e-28!239;DOID:305!6.64e-20!106;DOID:1749!4.25e-12!14;DOID:0050686!1.66e-11!137;DOID:299!3.86e-07!25;DOID:170!3.97e-07!6;DOID:7!5.08e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:1749;7.32e-15;14!DOID:1324;8.73e-14;15!DOID:0050615;6.86e-13;16!DOID:3307;1.21e-12;2!DOID:7;7.21e-09;39!DOID:178;3.72e-07;1!DOID:326;3.72e-07;1!DOID:3978;3.72e-07;1!DOID:3394;3.72e-07;1!DOID:5844;3.72e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.96e-22,106;DOID:0050687,5.71e-19,143;DOID:1749,1.06e-14,14;DOID:1324,9.39e-14,15;DOID:3307,3.90e-13,2;DOID:0050615,7.35e-13,16;DOID:7,4.86e-11,39;DOID:162,1.51e-09,235;DOID:14566,3.00e-09,239;DOID:178,4.60e-07,1;DOID:326,4.60e-07,1;DOID:3978,4.60e-07,1;DOID:3394,4.60e-07,1;DOID:5844,4.60e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002294!5.34e-08!7;UBERON:0001173!5.34e-08!7;UBERON:0004912!5.34e-08!7;UBERON:0002075!7.23e-08!18;UBERON:0001264!5.58e-07!10;UBERON:0003922!5.58e-07!10;UBERON:0003923!5.58e-07!10;UBERON:0003924!5.58e-07!10;UBERON:0003921!5.58e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0002394;5.16e-14;4!UBERON:0003928;5.16e-14;4!UBERON:0002294;9.25e-14;7!UBERON:0001173;9.25e-14;7!UBERON:0004802;9.09e-11;19!UBERON:0000115;9.09e-11;19!UBERON:0000058;1.13e-09;10!UBERON:0002048;3.19e-09;22!UBERON:0004807;3.19e-09;22!UBERON:0000117;3.19e-09;22!UBERON:0000171;3.19e-09;22!UBERON:0000170;3.19e-09;22!UBERON:0004913;3.72e-07;1!UBERON:0003703;3.72e-07;1!UBERON:0001174;3.72e-07;1!UBERON:0004914;3.72e-07;1!UBERON:0003343;6.02e-07;4!UBERON:0004785;6.02e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005911,2.51e-11,82;UBERON:0002294,6.71e-11,9;UBERON:0001173,6.71e-11,9;UBERON:0004912,6.71e-11,9;UBERON:0004802,9.63e-11,19;UBERON:0000115,9.63e-11,19;UBERON:0002394,1.22e-09,6;UBERON:0003928,1.22e-09,6;UBERON:0002048,3.35e-09,22;UBERON:0000117,3.35e-09,22;UBERON:0000171,3.35e-09,22;UBERON:0000170,3.35e-09,22;UBERON:0005597,3.35e-09,22;UBERON:0000118,3.35e-09,22;UBERON:0004913,2.23e-07,1;UBERON:0003703,2.23e-07,1;UBERON:0001174,2.23e-07,1;UBERON:0004914,2.23e-07,1;UBERON:0005177,2.44e-07,101;UBERON:0004807,4.15e-07,28;UBERON:0005153,4.99e-07,37;UBERON:0003343,5.05e-07,4;UBERON:0004785,5.05e-07,4 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730310090387373,0,0,0.204000691244253,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0.232401601740905,0.426507697462265,0,0,0,0,0,0,0,0.872389432677388,0,0.242584061187816,0.464858073811369,0.822335776043652,0,1.43846196161075,0.768482119587302,0.47296445977717,0,0.645484683583826,0,0.376484679085209,0.545812300115692,0,0.306083892370903,0,0.639337125799041,0,1.59570926097305,0.852449501065388,0.290209238628584,0,0,1.50749199154046,2.08593167368081,0.434377689410233,0.605399502633369,1.10483290796269,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0.587237189370939,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0.276350017785848,0,0.296573126324121,0,0,0.113309342697566,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0,0.794455084879313,0.573673241497627,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0.169560592310488,0.193260853163297,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0.301439377059586,0,0.099972991182057,1.2162378064119,0,0,0,0,0,0,0,0,0.336255431980582,0,0,0.256686072559497,0,0,0,0,0.637938751653163,0,0,0.414415513436035,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0,0,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0,0,0,0.127612712494584,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,2.88743956579008,3.18552280775341,0.185803175125719,0.28853842595289,0.213425530045242,0.159426272728822,0,0,0,0,0,0,0,0,0.338583555603207,0,0,0,0.343505344755765,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,1.42068073403207,0,0,0,0,0,1.22439575525196,0.329607748453519,0.422250816255987,0,0,0,0.306806047506464,0.123084805461069,0,1.25815691606258,2.86433879480975,0,0,0,0,0,0,0,0.260427761085233,0.0874599999961957,0,0.227586896570999,0,0,0,0.874813840149763,0,0,0,0,0,0,0,0.21787692703798,0.41827123283581,0,0.683652335082007,0.23056390438806,0.538545866458633,0.108647371922008,0,0,0,0,0,0,0,0,0,0.189753732724185,0.317873157960757,0.210998064528027,0.326465616318295,0.141353071433941,0.216388639742091,0,0,0,0,0,0,0,0,0,0.364909578431332,1.17398771359254,0.971121518136371,0,0,0.30607276163049,0,0.150323419414493,0.103688191397247,2.65861549082874,0.661983911750998,0.941798755221676,1.19472429772959,1.13843818411917,0.416024019039416,0.520679215005393,0.391969589657511,0.69647365264322,0,0.51595809741485,0.0967563312890851,0,0,0,0,0,0.548167698587004,0,0,0.195551382734803,1.52301758477914,0.213452994739353,0,0,0,0,0.288109595976299,3.10631338913581,0.235694034616795,0.271808412147228,0.418411385249333,0.815985741090574,0.288950589901519,0,0,0,0.429765441419957,0,0,0,0,1.19807400299395,0,0,0,0.360299883542404,0,0,0,0,2.46068703786872,0,0,0,0,0,0,0.899895566206002,0,0,0,0.0788057072991982,0,0.528001682597033,0,1.34340638123612,0,0,0,0,0,0,0,0.246277562248017,0,0,0,0,0.129282956361551,0,2.22412889249628,2.11444506695002,0.106787412567695,0,0,0,0.395223263795889,0,0,0,0.2506898940227,0,0,0.471162288750703,0,0,0,0,0,0,0.415045904808692,0,0.303298235083296,0.285465333544967,0.705797459094515,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0.400027764663154,0,0,0,0.770479321629213,1.07220795687463,0,0,0.231522474323834,0.244736704506468,0,0,0.219284049578707,0,0.38582807654183,0.506827321959218,0,0,0,0,0,0,0,0.982829546539238,0.737318726261158,0.211312123358627,0,0.106691729694141,0.344429959321631,0,0.368211900503681,0,0,0,0.107824811396682,0.157265941855896,0.327628914576042,0,0,0.123935764259002,0,0.318004350653419,0.157723490002507,0,0.352675943690684,0,0,0,0,0,0.252071696221718,0,0,0,1.57036349601641,2.59533391365029,0.183428598521679,0.346576998451015,0,0,0,0,0.20170506870352,0,0.261906694481422,0.655087670040387,1.6264169483875,0,0,0,0.0634158101939068,0,0,0,0,0.383287282918786,0,0,0,0,0,0.115233987555779,0,0,0,1.65471377237555,0.778619813244484,0,0,0,0,0.431855182437243,0,0,0.158013611732727,0.116241425368125,0.347716544605159,1.60342272946051,0.207216164163037,0.17071847709395,0,0,0,0,0,0.68732060563215,0,0,0,0.196300467230486,0.365753774946808,0,0,0,0,0,0,0,1.6941912305844,0,0.301925687133347,0,0,0,0,0,0,0,0,0.169927114687817,0.0939839179798536,0,0,1.07132363163395,0.705789743431384,1.04313776695919,0,0,0,0.315543124386369,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0.267964130156178,0,0,0.213233981900981,0,0,0,0.112131862580613,0,0,0.435433495793923,0,0,0,0,0.488419611665847,1.17400080465487,1.9307228228694,0.449126010532934,0,0,0,0,0,0 | |phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.730310090387373,0,0,0.204000691244253,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0.232401601740905,0.426507697462265,0,0,0,0,0,0,0,0.872389432677388,0,0.242584061187816,0.464858073811369,0.822335776043652,0,1.43846196161075,0.768482119587302,0.47296445977717,0,0.645484683583826,0,0.376484679085209,0.545812300115692,0,0.306083892370903,0,0.639337125799041,0,1.59570926097305,0.852449501065388,0.290209238628584,0,0,1.50749199154046,2.08593167368081,0.434377689410233,0.605399502633369,1.10483290796269,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0.587237189370939,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0.276350017785848,0,0.296573126324121,0,0,0.113309342697566,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0,0.794455084879313,0.573673241497627,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0.169560592310488,0.193260853163297,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0.301439377059586,0,0.099972991182057,1.2162378064119,0,0,0,0,0,0,0,0,0.336255431980582,0,0,0.256686072559497,0,0,0,0,0.637938751653163,0,0,0.414415513436035,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0,0,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0,0,0,0.127612712494584,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,2.88743956579008,3.18552280775341,0.185803175125719,0.28853842595289,0.213425530045242,0.159426272728822,0,0,0,0,0,0,0,0,0.338583555603207,0,0,0,0.343505344755765,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,1.42068073403207,0,0,0,0,0,1.22439575525196,0.329607748453519,0.422250816255987,0,0,0,0.306806047506464,0.123084805461069,0,1.25815691606258,2.86433879480975,0,0,0,0,0,0,0,0.260427761085233,0.0874599999961957,0,0.227586896570999,0,0,0,0.874813840149763,0,0,0,0,0,0,0,0.21787692703798,0.41827123283581,0,0.683652335082007,0.23056390438806,0.538545866458633,0.108647371922008,0,0,0,0,0,0,0,0,0,0.189753732724185,0.317873157960757,0.210998064528027,0.326465616318295,0.141353071433941,0.216388639742091,0,0,0,0,0,0,0,0,0,0.364909578431332,1.17398771359254,0.971121518136371,0,0,0.30607276163049,0,0.150323419414493,0.103688191397247,2.65861549082874,0.661983911750998,0.941798755221676,1.19472429772959,1.13843818411917,0.416024019039416,0.520679215005393,0.391969589657511,0.69647365264322,0,0.51595809741485,0.0967563312890851,0,0,0,0,0,0.548167698587004,0,0,0.195551382734803,1.52301758477914,0.213452994739353,0,0,0,0,0.288109595976299,3.10631338913581,0.235694034616795,0.271808412147228,0.418411385249333,0.815985741090574,0.288950589901519,0,0,0,0.429765441419957,0,0,0,0,1.19807400299395,0,0,0,0.360299883542404,0,0,0,0,2.46068703786872,0,0,0,0,0,0,0.899895566206002,0,0,0,0.0788057072991982,0,0.528001682597033,0,1.34340638123612,0,0,0,0,0,0,0,0.246277562248017,0,0,0,0,0.129282956361551,0,2.22412889249628,2.11444506695002,0.106787412567695,0,0,0,0.395223263795889,0,0,0,0.2506898940227,0,0,0.471162288750703,0,0,0,0,0,0,0.415045904808692,0,0.303298235083296,0.285465333544967,0.705797459094515,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0.400027764663154,0,0,0,0.770479321629213,1.07220795687463,0,0,0.231522474323834,0.244736704506468,0,0,0.219284049578707,0,0.38582807654183,0.506827321959218,0,0,0,0,0,0,0,0.982829546539238,0.737318726261158,0.211312123358627,0,0.106691729694141,0.344429959321631,0,0.368211900503681,0,0,0,0.107824811396682,0.157265941855896,0.327628914576042,0,0,0.123935764259002,0,0.318004350653419,0.157723490002507,0,0.352675943690684,0,0,0,0,0,0.252071696221718,0,0,0,1.57036349601641,2.59533391365029,0.183428598521679,0.346576998451015,0,0,0,0,0.20170506870352,0,0.261906694481422,0.655087670040387,1.6264169483875,0,0,0,0.0634158101939068,0,0,0,0,0.383287282918786,0,0,0,0,0,0.115233987555779,0,0,0,1.65471377237555,0.778619813244484,0,0,0,0,0.431855182437243,0,0,0.158013611732727,0.116241425368125,0.347716544605159,1.60342272946051,0.207216164163037,0.17071847709395,0,0,0,0,0,0.68732060563215,0,0,0,0.196300467230486,0.365753774946808,0,0,0,0,0,0,0,1.6941912305844,0,0.301925687133347,0,0,0,0,0,0,0,0,0.169927114687817,0.0939839179798536,0,0,1.07132363163395,0.705789743431384,1.04313776695919,0,0,0,0.315543124386369,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0.267964130156178,0,0,0.213233981900981,0,0,0,0.112131862580613,0,0,0.435433495793923,0,0,0,0,0.488419611665847,1.17400080465487,1.9307228228694,0.449126010532934,0,0,0,0,0,0 | ||
|short_description=p@chr12:104760413..104760416,+ | |||
}} | }} |
Latest revision as of 04:19, 24 July 2015
Short description: | p@chr12:104760413..104760416, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:104760413..104760416, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of lung | 9.63e-11 | 19 |
epithelial cell | 9.20e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
endo-epithelium | 2.51e-11 | 82 |
biliary system | 6.71e-11 | 9 |
biliary tree | 6.71e-11 | 9 |
biliary bud | 6.71e-11 | 9 |
respiratory tract epithelium | 9.63e-11 | 19 |
lung epithelium | 9.63e-11 | 19 |
bile duct | 1.22e-09 | 6 |
digestive system duct | 1.22e-09 | 6 |
lung | 3.35e-09 | 22 |
respiratory tube | 3.35e-09 | 22 |
respiration organ | 3.35e-09 | 22 |
pair of lungs | 3.35e-09 | 22 |
lung primordium | 3.35e-09 | 22 |
lung bud | 3.35e-09 | 22 |
hepatopancreatic ampulla | 2.23e-07 | 1 |
extrahepatic bile duct | 2.23e-07 | 1 |
common bile duct | 2.23e-07 | 1 |
duodenal papilla | 2.23e-07 | 1 |
trunk region element | 2.44e-07 | 101 |
respiratory system epithelium | 4.15e-07 | 28 |
epithelial bud | 4.99e-07 | 37 |
mucosa of oral region | 5.05e-07 | 4 |
respiratory system mucosa | 5.05e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.96e-22 | 106 |
cell type cancer | 5.71e-19 | 143 |
squamous cell carcinoma | 1.06e-14 | 14 |
lung cancer | 9.39e-14 | 15 |
teratoma | 3.90e-13 | 2 |
respiratory system cancer | 7.35e-13 | 16 |
disease of anatomical entity | 4.86e-11 | 39 |
cancer | 1.51e-09 | 235 |
disease of cellular proliferation | 3.00e-09 | 239 |
vascular disease | 4.60e-07 | 1 |
ischemia | 4.60e-07 | 1 |
extrinsic cardiomyopathy | 4.60e-07 | 1 |
myocardial ischemia | 4.60e-07 | 1 |
myocardial infarction | 4.60e-07 | 1 |