FFCP PHASE1:Hg19::chr2:166650700..166650816,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2591 | |EntrezGene=2591 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4125 | |HGNC=4125 | ||
|TSSclassifier=strong | |||
|UniProt=C9JW45,Q14435 | |UniProt=C9JW45,Q14435 | ||
|association_with_transcript=0bp_to_ENST00000422973,NM_004482,uc002udi.2,uc010fph.1_5end | |association_with_transcript=0bp_to_ENST00000422973,NM_004482,uc002udi.2,uc010fph.1_5end | ||
|cluster_id=chr2:166650700..166650816,- | |||
|coexpression_cluster_id=C4141 | |||
|description=CAGE_peak_1_at_GALNT3_5end | |description=CAGE_peak_1_at_GALNT3_5end | ||
|id=chr2:166650700..166650816,- | |id=chr2:166650700..166650816,- | ||
|ontology_enrichment_celltype=CL:0000066!4.34e-16!254;CL:0002076!1.05e-13!43;CL:0000223!1.39e-08!59;CL:0002251!7.85e-08!21 | |ontology_enrichment_celltype=CL:0000066!4.34e-16!254;CL:0002076!1.05e-13!43;CL:0000223!1.39e-08!59;CL:0002251!7.85e-08!21 | ||
|ontology_enrichment_celltype_v019=CL:0002076;2.63e-14;42!CL:0002251;1.99e-09;20!CL:0002368;2.46e-08;13!CL:0002159;3.67e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.31e-24,253;CL:0002076,7.08e-18,42;CL:0000223,1.13e-11,58;CL:0002251,1.75e-09,20;CL:0002368,2.49e-08,13;CL:0002159,3.74e-07,14 | |||
|ontology_enrichment_development_v019=UBERON:0006595;7.70e-08;86!UBERON:0008947;1.67e-07;29 | |||
|ontology_enrichment_disease=DOID:305!8.18e-14!106;DOID:1749!4.06e-09!14;DOID:0050687!4.92e-08!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.62e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.04e-18,106;DOID:0050687,1.99e-11,143;DOID:1749,4.41e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!7.62e-19!169;UBERON:0000925!7.62e-19!169;UBERON:0006595!7.62e-19!169;UBERON:0001007!1.99e-15!155;UBERON:0001555!1.99e-15!155;UBERON:0007026!1.99e-15!155;UBERON:0001004!2.19e-13!72;UBERON:0004921!3.35e-11!129;UBERON:0004185!3.35e-11!129;UBERON:0000077!7.85e-11!130;UBERON:0000065!5.61e-10!53;UBERON:0000161!8.11e-08!35;UBERON:0008947!2.44e-07!38;UBERON:0003258!2.44e-07!38;UBERON:0000072!3.92e-07!46;UBERON:0005911!4.66e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;5.35e-09;33!UBERON:0000065;8.39e-09;44!UBERON:0001004;1.11e-08;65!UBERON:0000161;4.98e-07;19!UBERON:0000166;4.98e-07;19!UBERON:0000072;9.66e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.64e-24,160;UBERON:0000925,1.64e-24,160;UBERON:0006595,1.64e-24,160;UBERON:0001007,3.90e-20,145;UBERON:0001555,3.90e-20,145;UBERON:0007026,3.90e-20,145;UBERON:0001004,1.02e-16,74;UBERON:0004921,1.92e-16,118;UBERON:0000065,1.92e-12,54;UBERON:0001041,3.65e-10,87;UBERON:0008947,5.95e-10,38;UBERON:0003258,5.95e-10,38;UBERON:0000161,2.68e-09,36;UBERON:0001008,4.26e-09,48;UBERON:0005911,6.59e-09,82;UBERON:0000072,7.52e-09,47;UBERON:0006554,9.82e-09,47;UBERON:0005153,1.43e-08,37;UBERON:0000166,2.18e-07,22;UBERON:0005178,8.35e-07,34;UBERON:0002224,8.35e-07,34 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,9.33788958705734,11.1648186875588,22.7179027015379,13.7158828678796,0.123766352960047,0,0,0,0,0,0.123121058076788,1.02000345622126,0.313454721478088,0.286235987131057,0,0.125542639594803,0,0.0821005894499457,0.0787107813136792,0,2.30297638858328,0.309632246632152,40.4545338770728,20.7832083956993,20.3364705591733,0,0,0,1.10799081706375,0.601633342410425,0.868043482863407,0.223915474239924,0.32389366601898,0.515151135268373,0.290796477559129,0,0.727752183563449,0.464858073811369,0,0,0,0.512321413058201,0.236482229888585,0,0,0,0,0,0.224723484445085,0.306083892370903,0.320929027076094,0.639337125799041,0,0.398927315243264,0,0.290209238628584,0.56738522469114,0,0.502497330513487,0,0.434377689410233,1.81619850790011,0,0,0,0,0.209658645508376,0,0.150176892841506,0.16072558669708,0,0,0,1.75996244461323,2.73069305631066,2.66852776159066,2.13365111283254,2.80277190925209,2.87376219977242,4.62731410949403,4.77026877267682,2.27685187643779,2.34894875748376,6.11637165000366,0,1.12101712596307,0,0.393419540227666,0.393010762749165,0.616804496998528,1.33749196312542,0.32592226663359,0,0,4.90206010294764,4.71369451959739,7.08908462667588,2.70803863765016,3.33037431286755,1.30059347559878,1.15106533222573,0,0.289803085735052,0.14828656316206,0,0,3.28597093822942,1.14966148080576,1.71813722741315,1.01207876807801,0.637130828648193,1.30216690771284,0.950452044448374,0.903450714466637,2.17577238962511,3.74792179657038,1.65744076430812,2.46338399076314,2.01606743224732,1.60464117470104,1.73789284659359,0,0,0,0,0,0.144846518960824,0,0,0,1.33037638477538,1.40535657109002,12.7049703232781,13.4789256668241,15.9437310397305,0,0,0.132957960518865,0.238490624305342,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.75560528296651,14.3911037207036,0.496971951695318,0,0,0,0.354668382198357,0,0,0.49333509683432,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0.204154171254893,1.47401180774122,0,0,0,0,0,0.168336113954066,0.750711119231785,0.554128230968366,0.438977620880838,0.612975591598039,0,0.113432183160021,0.179389635688862,0,0,0,0.103052529238439,0,0,0,0,0,0,1.45481451136931,0,0,0,55.8523865641928,79.3691210919329,67.9726891071939,44.0325079127839,20.2770545531872,31.9533342891176,24.7749921486735,24.7274433858116,14.964071722109,0,2.57296375277154,0,0,0,4.49565840151407,5.39471008249925,6.98931986662098,5.5146986366197,5.22910665821775,7.82993043066619,2.83145747136345,6.47530834913642,5.00171304030308,0,0,0,0,0,0,0.590789906681404,0,46.9815835234694,2.57351715447788,39.9491038887397,29.2244558469811,87.962850860177,72.3115756688116,0.651616610620649,0,0,0,1.40890433082986,0,0,0,11.0628615714299,13.735778593518,0,0,0,58.1149770718017,119.26731102119,85.2068334426743,41.1073619206074,48.5358677318316,32.9709104082082,1.97065295158377,0.792435906119034,1.4512968087854,1.15295962733569,2.27236380167484,0.063497894292169,0,0,6.84289784090821,0.102827492703324,0,0,0.112131084345361,0,0.1466765716419,0.517086863031111,0,0,0,0,1.02882949704857,0,0.532844358032199,0,0,0,0,0,0,0,0.871533458600294,0.099972991182057,0,0,0,0.479249710983165,0,0,0.289562613335158,0,0.179060963239896,5.94051263165695,2.56139988262505,1.50939302401662,2.31017465303547,0,0,0,0,0,1.49801404789436,0,2.90090859405225,0.36807447515742,0,0.271265023699736,0.415941723061614,0.178428988797162,0.157702415033935,0,0.300946099727719,2.27407504055985,1.03473071292505,0.664225598535437,0.368738337083406,0,0,0,2.06768026122887,0.862856803274467,2.02782359826544,2.12189300012382,13.3148351608398,1.81434175997808,0,0,0.280660094433074,0,0,0.160853921143607,0,0,0,0,0,0,26.8307978093401,62.9590316752314,116.574531992845,0.114814448164607,0,0.131124414959424,11.2799903226853,40.3560366427133,4.70609861506113,0,16.3605024783957,0,0,7.55705706357488,0,2.70946437543853,3.51182841698397,18.0962153861977,20.7769002232181,5.1491193586101,0.219259876645935,0,1.02580050046556,0.984043937099117,0.976135183992909,7.00678879204511,1.19040304263846,0.41254749960294,27.5647458238163,20.1518676271322,0,0,0,0,0,0.107420244868274,0.145016693914229,0,0,68.5932398748059,43.434955224514,42.3674205482019,69.900026571185,0,0,0,0,0,0,0.55597265731176,0.286249773483982,0.372158369359667,2.21465597303108,0.190630193923825,0,0.42793898803392,0,0,0,0.274537029736055,0,0,0,0,0,0.487426979262569,0,0,0,0,0,0,1.75380354101505,0,0,0.405820753925408,0.30982349809975,0.281695602532241,0.430234056612155,0.294747123039363,0,0,0.422215270595328,0,0.379473173765715,0,53.7881610135612,21.4496728171452,13.0669181833587,7.34321646058877,12.9151611801369,13.47771805341,17.2937759879304,124.280359511965,3.55213326462519,2.29391162142713,1.70894156152249,1.66762242820452,0.822724546172388,1.29694662238543,2.70015718619057,1.58625035258854,0,0,41.6568367167754,0,0,0,0,1.1974762285969,0.383010740264733,0,1.29848776109822,0,0,1.88015874927628,0,0,0.1605880751037,0.201799707191048,0,0.343505344755765,0,0,0,0.19538809540204,0,0,0,0,0,61.1949567134879,0.293016358543788,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| ||
|short_description=p1@GALNT3 | |short_description=p1@GALNT3 | ||
}} | }} |
Latest revision as of 23:52, 17 September 2015
Short description: | p1@GALNT3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GALNT3_5end |
Coexpression cluster: | C4141_Mallassezderived_Urothelial_papillotubular_large_Prostate_serous_Keratinocyte |
Association with transcript: | 0bp_to_ENST00000422973, NM_004482, uc002udi.2, uc010fph.1_5end |
EntrezGene: | GALNT3 |
HGNC: | 4125 |
UniProt: | C9JW45Q14435 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.31e-24 | 253 |
endo-epithelial cell | 7.08e-18 | 42 |
endodermal cell | 1.13e-11 | 58 |
epithelial cell of alimentary canal | 1.75e-09 | 20 |
respiratory epithelial cell | 2.49e-08 | 13 |
general ecto-epithelial cell | 3.74e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.64e-24 | 160 |
endoderm | 1.64e-24 | 160 |
presumptive endoderm | 1.64e-24 | 160 |
digestive system | 3.90e-20 | 145 |
digestive tract | 3.90e-20 | 145 |
primitive gut | 3.90e-20 | 145 |
respiratory system | 1.02e-16 | 74 |
subdivision of digestive tract | 1.92e-16 | 118 |
respiratory tract | 1.92e-12 | 54 |
foregut | 3.65e-10 | 87 |
respiratory primordium | 5.95e-10 | 38 |
endoderm of foregut | 5.95e-10 | 38 |
orifice | 2.68e-09 | 36 |
renal system | 4.26e-09 | 48 |
endo-epithelium | 6.59e-09 | 82 |
segment of respiratory tract | 7.52e-09 | 47 |
urinary system structure | 9.82e-09 | 47 |
epithelial bud | 1.43e-08 | 37 |
oral opening | 2.18e-07 | 22 |
thoracic cavity element | 8.35e-07 | 34 |
thoracic cavity | 8.35e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.04e-18 | 106 |
cell type cancer | 1.99e-11 | 143 |
squamous cell carcinoma | 4.41e-11 | 14 |