FFCP PHASE1:Hg19::chr2:128399902..128399934,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55679 | |EntrezGene=55679 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16084 | |HGNC=16084 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000484252,uc002tou.2_5end | |association_with_transcript=0bp_to_ENST00000484252,uc002tou.2_5end | ||
|cluster_id=chr2:128399902..128399934,- | |||
|coexpression_cluster_id=C921 | |||
|description=CAGE_peak_11_at_LIMS2_5end | |description=CAGE_peak_11_at_LIMS2_5end | ||
|id=chr2:128399902..128399934,- | |id=chr2:128399902..128399934,- | ||
|ontology_enrichment_celltype=CL:0000838!2.55e-26!52;CL:0000542!1.25e-25!53;CL:0000051!1.25e-25!53;CL:0000791!1.55e-22!18;CL:0000789!1.55e-22!18;CL:0002420!1.55e-22!18;CL:0002419!1.55e-22!18;CL:0000790!1.55e-22!18;CL:0000084!1.93e-22!25;CL:0000827!1.93e-22!25;CL:0002087!4.38e-20!119;CL:0000738!4.88e-18!140;CL:0000037!1.15e-16!172;CL:0000566!1.15e-16!172;CL:0002031!1.36e-16!124;CL:0000988!6.70e-15!182;CL:0000625!1.29e-14!11;CL:0002032!1.58e-13!165;CL:0000837!1.58e-13!165;CL:0000624!2.71e-11!6;CL:0000236!2.09e-10!14;CL:0000898!9.95e-07!3 | |ontology_enrichment_celltype=CL:0000838!2.55e-26!52;CL:0000542!1.25e-25!53;CL:0000051!1.25e-25!53;CL:0000791!1.55e-22!18;CL:0000789!1.55e-22!18;CL:0002420!1.55e-22!18;CL:0002419!1.55e-22!18;CL:0000790!1.55e-22!18;CL:0000084!1.93e-22!25;CL:0000827!1.93e-22!25;CL:0002087!4.38e-20!119;CL:0000738!4.88e-18!140;CL:0000037!1.15e-16!172;CL:0000566!1.15e-16!172;CL:0002031!1.36e-16!124;CL:0000988!6.70e-15!182;CL:0000625!1.29e-14!11;CL:0002032!1.58e-13!165;CL:0000837!1.58e-13!165;CL:0000624!2.71e-11!6;CL:0000236!2.09e-10!14;CL:0000898!9.95e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000084;1.36e-26;25!CL:0000791;1.18e-22;18!CL:0000789;1.18e-22;18!CL:0002419;1.18e-22;18!CL:0000624;1.02e-15;6!CL:0000898;2.34e-12;3!CL:0000625;2.26e-11;11!CL:0000542;2.94e-11;53!CL:0000815;8.46e-09;2!CL:0000792;8.46e-09;2!CL:0002677;8.46e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,1.09e-26,25;CL:0000827,1.09e-26,25;CL:0000791,9.22e-23,18;CL:0000789,9.22e-23,18;CL:0002420,9.22e-23,18;CL:0002419,9.22e-23,18;CL:0000790,9.22e-23,18;CL:0000838,4.49e-19,52;CL:0000542,1.24e-18,53;CL:0000051,1.24e-18,53;CL:0000624,8.92e-16,6;CL:0000898,2.30e-12,3;CL:0000625,1.98e-11,11;CL:0000815,9.34e-09,2;CL:0000792,9.34e-09,2;CL:0002677,9.34e-09,2;CL:0002087,4.52e-08,115;CL:0000738,6.76e-08,136 | |||
|ontology_enrichment_development_v019=CL:0000790;1.18e-22;18!CL:0000051;2.94e-11;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!4.48e-08!15;UBERON:0000179!4.48e-08!15;UBERON:0000463!4.48e-08!15;UBERON:0004177!6.12e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0004177;2.30e-12;5!UBERON:0005057;2.30e-12;5!UBERON:0002370;4.27e-09;2!UBERON:0005058;4.27e-09;2!UBERON:0009113;4.27e-09;2!UBERON:0002390;6.44e-09;32!UBERON:0000178;4.30e-08;15!UBERON:0000179;4.30e-08;15!UBERON:0000463;4.30e-08;15!UBERON:0002193;3.82e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,1.35e-13,7;UBERON:0005057,1.35e-13,7;UBERON:0002370,1.15e-09,4;UBERON:0005058,1.15e-09,4;UBERON:0009113,1.15e-09,4;UBERON:0003295,1.15e-09,4;UBERON:0005562,1.15e-09,4;UBERON:0000178,5.56e-08,15;UBERON:0000179,5.56e-08,15;UBERON:0000463,5.56e-08,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0.200544447470142,0.217010870715852,0.223915474239924,0.32389366601898,0,0.436194716338694,0,0.242584061187816,0,0,0,0,0.256160706529101,0,0,0,0,0.376484679085209,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0.112328631146495,0,0,0,0,0,3.51992488922645,0.546138611262131,0.889509253863555,0.426730222566507,0.400395987036012,1.14950487990897,1.32208974556972,0,2.27685187643779,0,0.764546456250458,0,0.560508562981536,0,1.57367816091066,2.75107533924415,0.822405995998037,7.18901930179916,4.23698946623668,4.2610302516126,3.89653456815823,1.6711568532776,2.3568472597987,3.54454231333794,4.60366568400527,3.20228299314188,1.95089021339817,3.4531959966772,3.86890024900188,6.0858648004361,7.41432815810302,4.0131124213457,11.4989076185474,6.34532319106371,3.83220493601921,3.77990190030893,2.53019692019503,2.54852331459277,1.95325036156926,0.950452044448374,1.05402583354441,1.27986611154418,3.74792179657038,1.89421801635213,0.821127996921047,0.201606743224732,0,0.724122019413995,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0.324547393654683,0,0.132957960518865,0,1.14398982156026,0,0,0,0,0.56530794192401,1.25849830862972,0.550236083880135,0,0,0,0,0,0,0,0,0,0.0892997282840798,0.44905874525234,0.112611480483322,0,0.949265659568129,0.549605231791222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.6853560818542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253991577168676,0,0,0,0.616964956219941,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0.215627574859517,0.513372145118994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,1.94142780736755,0.533637789017222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01489521846434,0,1.13929437434833,1.66762242820452,0.822724546172388,3.24236655596359,0,0.79312517629427,0,0,0,0,0,9.46186516533908,11.4786916364752,0.59873811429845,0.191505370132367,0,0.973865820823666,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0.33307196799782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65770349318689,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,20.4386596391473,0,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0.182454789215666,0,0,0,3.62972148145992,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0.157204305099666,0.414239055347196,1.9846640872478,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0.078493092850514,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,1.09279780251979,0,0,0,0,0,0,0,1.4097587696978,1.80482086326016,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0.109265571963696,0.126698501011437,0,0,0,0,0,0,0,0,0.426467963801962,0,4.77957932786445,4.34523000071005,0,0,0,0,0,2.62673006756891,0,0,0,0,0,0,0,0,0,0,2.21401172950129,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0.200544447470142,0.217010870715852,0.223915474239924,0.32389366601898,0,0.436194716338694,0,0.242584061187816,0,0,0,0,0.256160706529101,0,0,0,0,0.376484679085209,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0.112328631146495,0,0,0,0,0,3.51992488922645,0.546138611262131,0.889509253863555,0.426730222566507,0.400395987036012,1.14950487990897,1.32208974556972,0,2.27685187643779,0,0.764546456250458,0,0.560508562981536,0,1.57367816091066,2.75107533924415,0.822405995998037,7.18901930179916,4.23698946623668,4.2610302516126,3.89653456815823,1.6711568532776,2.3568472597987,3.54454231333794,4.60366568400527,3.20228299314188,1.95089021339817,3.4531959966772,3.86890024900188,6.0858648004361,7.41432815810302,4.0131124213457,11.4989076185474,6.34532319106371,3.83220493601921,3.77990190030893,2.53019692019503,2.54852331459277,1.95325036156926,0.950452044448374,1.05402583354441,1.27986611154418,3.74792179657038,1.89421801635213,0.821127996921047,0.201606743224732,0,0.724122019413995,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0.324547393654683,0,0.132957960518865,0,1.14398982156026,0,0,0,0,0.56530794192401,1.25849830862972,0.550236083880135,0,0,0,0,0,0,0,0,0,0.0892997282840798,0.44905874525234,0.112611480483322,0,0.949265659568129,0.549605231791222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.6853560818542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253991577168676,0,0,0,0.616964956219941,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0.215627574859517,0.513372145118994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,1.94142780736755,0.533637789017222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01489521846434,0,1.13929437434833,1.66762242820452,0.822724546172388,3.24236655596359,0,0.79312517629427,0,0,0,0,0,9.46186516533908,11.4786916364752,0.59873811429845,0.191505370132367,0,0.973865820823666,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0.33307196799782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65770349318689,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,20.4386596391473,0,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0.182454789215666,0,0,0,3.62972148145992,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0.157204305099666,0.414239055347196,1.9846640872478,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0.078493092850514,0,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,1.09279780251979,0,0,0,0,0,0,0,1.4097587696978,1.80482086326016,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0.109265571963696,0.126698501011437,0,0,0,0,0,0,0,0,0.426467963801962,0,4.77957932786445,4.34523000071005,0,0,0,0,0,2.62673006756891,0,0,0,0,0,0,0,0,0,0,2.21401172950129,0 | ||
|short_description=p11@LIMS2 | |short_description=p11@LIMS2 | ||
}} | }} |
Latest revision as of 20:58, 16 September 2015
Short description: | p11@LIMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_LIMS2_5end |
Coexpression cluster: | C921_chronic_thymus_CD4_acute_CD8_Hodgkin_Peripheral |
Association with transcript: | 0bp_to_ENST00000484252, uc002tou.2_5end |
EntrezGene: | LIMS2 |
HGNC: | 16084 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 1.09e-26 | 25 |
pro-T cell | 1.09e-26 | 25 |
mature alpha-beta T cell | 9.22e-23 | 18 |
alpha-beta T cell | 9.22e-23 | 18 |
immature T cell | 9.22e-23 | 18 |
mature T cell | 9.22e-23 | 18 |
immature alpha-beta T cell | 9.22e-23 | 18 |
lymphoid lineage restricted progenitor cell | 4.49e-19 | 52 |
lymphocyte | 1.24e-18 | 53 |
common lymphoid progenitor | 1.24e-18 | 53 |
CD4-positive, alpha-beta T cell | 8.92e-16 | 6 |
naive T cell | 2.30e-12 | 3 |
CD8-positive, alpha-beta T cell | 1.98e-11 | 11 |
regulatory T cell | 9.34e-09 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 9.34e-09 | 2 |
naive regulatory T cell | 9.34e-09 | 2 |
nongranular leukocyte | 4.52e-08 | 115 |
leukocyte | 6.76e-08 | 136 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 1.35e-13 | 7 |
immune organ | 1.35e-13 | 7 |
thymus | 1.15e-09 | 4 |
hemolymphoid system gland | 1.15e-09 | 4 |
thymic region | 1.15e-09 | 4 |
pharyngeal gland | 1.15e-09 | 4 |
thymus primordium | 1.15e-09 | 4 |
blood | 5.56e-08 | 15 |
haemolymphatic fluid | 5.56e-08 | 15 |
organism substance | 5.56e-08 | 15 |