FFCP PHASE1:Hg19::chr21:47648665..47648736,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4047 | |EntrezGene=4047 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6708 | |HGNC=6708 | ||
|TSSclassifier=strong | |||
|UniProt=P48449,C9J315,E9PEI9 | |UniProt=P48449,C9J315,E9PEI9 | ||
|association_with_transcript=0bp_to_ENST00000356396,ENST00000397728,ENST00000450351,ENST00000464357,ENST00000472272,ENST00000522411_5end | |association_with_transcript=0bp_to_ENST00000356396,ENST00000397728,ENST00000450351,ENST00000464357,ENST00000472272,ENST00000522411_5end | ||
|cluster_id=chr21:47648665..47648736,- | |||
|description=CAGE_peak_1_at_LSS_5end | |description=CAGE_peak_1_at_LSS_5end | ||
|id=chr21:47648665..47648736,- | |id=chr21:47648665..47648736,- | ||
|ontology_enrichment_celltype=CL:0000055!3.42e-19!180;CL:0000220!4.23e-18!246;CL:0002321!1.53e-17!248;CL:0000222!6.86e-14!119;CL:0000183!1.37e-13!59;CL:0002371!5.55e-13!591;CL:0000144!2.21e-11!625;CL:0000187!3.22e-11!54;CL:0000680!5.77e-11!57;CL:0000056!5.77e-11!57;CL:0000355!5.77e-11!57;CL:0000057!5.90e-11!75;CL:0000548!2.26e-09!679;CL:0000004!2.26e-09!679;CL:0000255!2.26e-09!679;CL:0000393!2.49e-09!60;CL:0000211!2.49e-09!60;CL:0000192!3.78e-09!42;CL:0000514!3.78e-09!42;CL:1000449!9.16e-09!16;CL:0000012!1.01e-08!682;CL:0002681!8.78e-08!13;CL:0002584!8.78e-08!13;CL:1000507!2.77e-07!12;CL:1000494!2.77e-07!12 | |ontology_enrichment_celltype=CL:0000055!3.42e-19!180;CL:0000220!4.23e-18!246;CL:0002321!1.53e-17!248;CL:0000222!6.86e-14!119;CL:0000183!1.37e-13!59;CL:0002371!5.55e-13!591;CL:0000144!2.21e-11!625;CL:0000187!3.22e-11!54;CL:0000680!5.77e-11!57;CL:0000056!5.77e-11!57;CL:0000355!5.77e-11!57;CL:0000057!5.90e-11!75;CL:0000548!2.26e-09!679;CL:0000004!2.26e-09!679;CL:0000255!2.26e-09!679;CL:0000393!2.49e-09!60;CL:0000211!2.49e-09!60;CL:0000192!3.78e-09!42;CL:0000514!3.78e-09!42;CL:1000449!9.16e-09!16;CL:0000012!1.01e-08!682;CL:0002681!8.78e-08!13;CL:0002584!8.78e-08!13;CL:1000507!2.77e-07!12;CL:1000494!2.77e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:1000449;3.69e-08;15!CL:0000187;1.96e-07;55!CL:0000192;3.24e-07;43!CL:0002681;3.57e-07;12!CL:0002584;3.57e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.86e-18,250;CL:0000222,1.18e-14,121;CL:0000187,1.01e-11,55;CL:0000680,1.87e-11,58;CL:0000056,1.87e-11,58;CL:0000355,1.87e-11,58;CL:0000057,8.94e-11,76;CL:0000393,8.75e-10,61;CL:0000211,8.75e-10,61;CL:0000192,1.20e-09,43;CL:0000514,1.20e-09,43;CL:1000449,3.63e-08,15;CL:0002681,3.52e-07,12;CL:0002584,3.52e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000514;3.24e-07;43!CL:0000355;7.49e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!1.43e-25!312;UBERON:0000483!8.51e-25!309;UBERON:0000475!3.59e-24!365;UBERON:0005256!7.07e-19!143;UBERON:0000477!1.55e-17!286;UBERON:0000914!6.55e-16!83;UBERON:0002329!6.55e-16!83;UBERON:0003077!6.55e-16!83;UBERON:0003059!6.55e-16!83;UBERON:0007282!6.55e-16!83;UBERON:0009618!6.55e-16!83;UBERON:0007285!6.55e-16!83;UBERON:0000481!8.38e-16!347;UBERON:0000486!6.52e-15!82;UBERON:0004111!3.14e-13!241;UBERON:0004290!6.69e-13!70;UBERON:0000025!3.33e-12!194;UBERON:0002100!5.81e-12!216;UBERON:0004121!8.76e-12!169;UBERON:0000924!2.22e-11!173;UBERON:0006601!2.22e-11!173;UBERON:0003914!3.16e-11!118;UBERON:0000033!9.08e-11!123;UBERON:0000064!1.65e-10!219;UBERON:0000468!3.53e-10!659;UBERON:0002049!8.68e-10!79;UBERON:0007798!8.68e-10!79;UBERON:0001134!9.03e-10!61;UBERON:0002036!9.03e-10!61;UBERON:0003082!9.03e-10!61;UBERON:0000480!2.27e-09!626;UBERON:0000467!2.36e-09!625;UBERON:0002385!3.16e-09!63;UBERON:0001015!3.16e-09!63;UBERON:0000383!3.16e-09!63;UBERON:0000153!4.50e-09!129;UBERON:0007811!4.50e-09!129;UBERON:0004211!9.16e-09!16;UBERON:0001285!9.16e-09!16;UBERON:0007684!9.16e-09!16;UBERON:0003220!9.16e-09!16;UBERON:0004208!9.16e-09!16;UBERON:0003104!1.84e-08!238;UBERON:0009142!1.84e-08!238;UBERON:0005085!3.08e-08!29;UBERON:0000490!3.22e-08!138;UBERON:0006555!4.54e-08!17;UBERON:0005103!4.54e-08!17;UBERON:0000083!4.54e-08!17;UBERON:0009201!4.54e-08!17;UBERON:0004819!4.54e-08!17;UBERON:0006553!4.54e-08!17;UBERON:0003074!4.54e-08!17;UBERON:0003060!4.54e-08!17;UBERON:0000923!7.59e-08!604;UBERON:0005291!7.59e-08!604;UBERON:0006598!7.59e-08!604;UBERON:0002532!7.59e-08!604;UBERON:0001225!8.78e-08!13;UBERON:0008987!8.78e-08!13;UBERON:0002050!9.03e-08!605;UBERON:0005423!9.03e-08!605;UBERON:0000353!1.42e-07!17;UBERON:0003102!1.98e-07!95;UBERON:0009773!2.77e-07!12;UBERON:0001231!2.77e-07!12;UBERON:0004810!2.77e-07!12;UBERON:0000080!4.05e-07!18;UBERON:0002120!4.05e-07!18;UBERON:0004875!4.05e-07!18;UBERON:0005721!4.05e-07!18;UBERON:0005754!4.05e-07!18;UBERON:0007297!4.05e-07!18;UBERON:0000922!7.03e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;3.69e-08;15!UBERON:0004819;3.69e-08;15!UBERON:0001285;3.69e-08;15!UBERON:0007684;3.69e-08;15!UBERON:0000353;1.79e-07;15!UBERON:0001225;3.57e-07;12!UBERON:0008987;3.57e-07;12 | |||
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| ||
|short_description=p1@LSS | |short_description=p1@LSS | ||
}} | }} |
Latest revision as of 23:30, 18 September 2015
Short description: | p1@LSS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LSS_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000356396, ENST00000397728, ENST00000450351, ENST00000464357, ENST00000472272, ENST00000522411_5end |
EntrezGene: | LSS |
HGNC: | 6708 |
UniProt: | P48449C9J315E9PEI9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.86e-18 | 250 |
mesodermal cell | 1.18e-14 | 121 |
muscle cell | 1.01e-11 | 55 |
muscle precursor cell | 1.87e-11 | 58 |
myoblast | 1.87e-11 | 58 |
multi-potent skeletal muscle stem cell | 1.87e-11 | 58 |
fibroblast | 8.94e-11 | 76 |
electrically responsive cell | 8.75e-10 | 61 |
electrically active cell | 8.75e-10 | 61 |
smooth muscle cell | 1.20e-09 | 43 |
smooth muscle myoblast | 1.20e-09 | 43 |
epithelial cell of nephron | 3.63e-08 | 15 |
kidney cortical cell | 3.52e-07 | 12 |
renal cortical epithelial cell | 3.52e-07 | 12 |