FFCP PHASE1:Hg19::chr1:24915973..24915984,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=400746 | |EntrezGene=400746 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29332 | |HGNC=29332 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=18bp_to_ENST00000486262_5end | |association_with_transcript=18bp_to_ENST00000486262_5end | ||
|cluster_id=chr1:24915973..24915984,+ | |||
|coexpression_cluster_id=C801 | |||
|description=CAGE_peak_3_at_C1orf130_5end | |description=CAGE_peak_3_at_C1orf130_5end | ||
|id=chr1:24915973..24915984,+ | |id=chr1:24915973..24915984,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.49e-38;3!UBERON:0003057;1.49e-38;3!UBERON:0003056;9.90e-11;3!UBERON:0006601;8.92e-08;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.05e-25!115;UBERON:0001896!2.12e-19!3;UBERON:0005290!2.12e-19!3;UBERON:0010096!2.12e-19!3;UBERON:0002240!2.88e-19!3;UBERON:0003076!1.99e-14!15;UBERON:0003057!1.99e-14!15;UBERON:0003127!2.71e-13!2;UBERON:0002298!8.98e-13!8;UBERON:0000341!1.22e-12!2;UBERON:0005174!9.06e-12!5;UBERON:0001137!9.06e-12!5;UBERON:0001723!4.25e-09!3;UBERON:0001033!4.25e-09!3;UBERON:0010056!4.25e-09!3;UBERON:0003103!1.71e-08!69;UBERON:0002038!9.91e-08!1;UBERON:0009661!9.91e-08!1;UBERON:0002079!1.74e-07!1;UBERON:0001831!2.37e-07!1;UBERON:0001567!2.37e-07!1;UBERON:0008801!2.37e-07!1;UBERON:0000989!2.67e-07!1;UBERON:0008811!2.67e-07!1;UBERON:0006258!2.67e-07!1;UBERON:0005876!2.67e-07!1;UBERON:0004874!2.67e-07!1;UBERON:0002363!3.21e-07!1;UBERON:0007647!3.21e-07!1;UBERON:0010115!3.21e-07!1;UBERON:0002146!3.85e-07!1;UBERON:0005623!3.85e-07!1;UBERON:0001301!4.60e-07!1;UBERON:0006834!4.89e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0002240;1.49e-38;3!UBERON:0005174;1.49e-38;3!UBERON:0001137;1.49e-38;3!UBERON:0001896;2.64e-38;3!UBERON:0005290;2.64e-38;3!UBERON:0002038;7.48e-30;1!UBERON:0009661;7.48e-30;1!UBERON:0002950;7.48e-30;1!UBERON:0001891;7.48e-30;1!UBERON:0002298;9.49e-20;6!UBERON:0003127;2.05e-15;2!UBERON:0004733;2.13e-10;12!UBERON:0002028;2.13e-10;12!UBERON:0004732;1.13e-09;13!UBERON:0000966;6.04e-07;5!UBERON:0005388;6.04e-07;5!UBERON:0001802;6.04e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002240,1.80e-38,3;UBERON:0005174,1.80e-38,3;UBERON:0001137,1.80e-38,3;UBERON:0001896,2.18e-38,3;UBERON:0005290,2.18e-38,3;UBERON:0010096,2.18e-38,3;UBERON:0003076,1.65e-30,15;UBERON:0003057,1.65e-30,15;UBERON:0002038,7.48e-30,1;UBERON:0009661,7.48e-30,1;UBERON:0002950,7.48e-30,1;UBERON:0001891,7.48e-30,1;UBERON:0009616,7.48e-30,1;UBERON:0010286,7.48e-30,1;UBERON:0002298,8.63e-20,6;UBERON:0003127,2.74e-15,2;UBERON:0001049,8.86e-13,56;UBERON:0005068,8.86e-13,56;UBERON:0006241,8.86e-13,56;UBERON:0007135,8.86e-13,56;UBERON:0003075,1.51e-12,82;UBERON:0007284,1.51e-12,82;UBERON:0002346,5.57e-12,86;UBERON:0004733,2.03e-10,12;UBERON:0002028,2.03e-10,12;UBERON:0007277,2.03e-10,12;UBERON:0010371,5.80e-10,104;UBERON:0004732,1.08e-09,13;UBERON:0001017,7.14e-09,81;UBERON:0001016,4.97e-08,89;UBERON:0010314,6.75e-08,132 | |||
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|short_description=p3@C1orf130 | |short_description=p3@C1orf130 | ||
}} | }} |
Latest revision as of 01:33, 17 September 2015
Short description: | p3@C1orf130 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_C1orf130_5end |
Coexpression cluster: | C801_substantia_spinal_medulla_retina_pineal_penis_tongue |
Association with transcript: | 18bp_to_ENST00000486262_5end |
EntrezGene: | C1orf130 |
HGNC: | 29332 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
spinal cord | 1.80e-38 | 3 |
dorsal region element | 1.80e-38 | 3 |
dorsum | 1.80e-38 | 3 |
medulla oblongata | 2.18e-38 | 3 |
myelencephalon | 2.18e-38 | 3 |
future myelencephalon | 2.18e-38 | 3 |
posterior neural tube | 1.65e-30 | 15 |
chordal neural plate | 1.65e-30 | 15 |
substantia nigra | 7.48e-30 | 1 |
midbrain nucleus | 7.48e-30 | 1 |
regional part of midbrain | 7.48e-30 | 1 |
midbrain | 7.48e-30 | 1 |
presumptive midbrain | 7.48e-30 | 1 |
midbrain neural tube | 7.48e-30 | 1 |
brainstem | 8.63e-20 | 6 |
open tracheal system trachea | 2.74e-15 | 2 |
neural tube | 8.86e-13 | 56 |
neural rod | 8.86e-13 | 56 |
future spinal cord | 8.86e-13 | 56 |
neural keel | 8.86e-13 | 56 |
neural plate | 1.51e-12 | 82 |
presumptive neural plate | 1.51e-12 | 82 |
neurectoderm | 5.57e-12 | 86 |
segmental subdivision of hindbrain | 2.03e-10 | 12 |
hindbrain | 2.03e-10 | 12 |
presumptive hindbrain | 2.03e-10 | 12 |
ecto-epithelium | 5.80e-10 | 104 |
segmental subdivision of nervous system | 1.08e-09 | 13 |
central nervous system | 7.14e-09 | 81 |
nervous system | 4.97e-08 | 89 |
structure with developmental contribution from neural crest | 6.75e-08 | 132 |