FFCP PHASE1:Hg19::chr11:5706239..5706344,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:5706239..5706344,-
|short_description=p1@TRIM5
|description=CAGE_peak_1_at_TRIM5_5end
|association_with_transcript=0bp_to_ENST00000305836,ENST00000380034,...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=85363 | |EntrezGene=85363 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16276 | |HGNC=16276 | ||
|UniProt=A6NLP3, | |TSSclassifier=strong | ||
|UniProt=A6NLP3,Q9C035,F8W6N8,C9JWN8 | |||
|association_with_transcript=0bp_to_ENST00000305836,ENST00000380034,ENST00000396847,ENST00000396853,ENST00000396855,ENST00000419850,NM_033034,NM_033092,NM_033093,uc001mbm.1,uc001mbn.2,uc001mbo.2,uc001mbp.2_5end | |||
|cluster_id=chr11:5706239..5706344,- | |||
|description=CAGE_peak_1_at_TRIM5_5end | |||
|id=chr11:5706239..5706344,- | |||
|ontology_enrichment_celltype=CL:0002139!4.95e-12!24;CL:0002371!1.91e-10!591;CL:0000144!5.63e-10!625;CL:0000071!5.86e-09!18;CL:0002546!5.86e-09!18;CL:0000213!1.83e-07!57;CL:0000215!1.83e-07!57;CL:0000115!5.74e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0002139;4.50e-12;24!CL:0000071;5.22e-09;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,4.95e-12,24;CL:0000071,5.86e-09,18;CL:0002546,5.86e-09,18;CL:0000213,1.89e-07,58;CL:0000215,1.89e-07,58;CL:0000115,6.38e-07,36 | |||
|ontology_enrichment_development_v019=CL:0002546;5.22e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!7.23e-10!79;UBERON:0007798!7.23e-10!79;UBERON:0004535!9.02e-10!110;UBERON:0001009!5.21e-09!113;UBERON:0001986!5.86e-09!18;UBERON:0004638!5.86e-09!18;UBERON:0004852!5.86e-09!18;UBERON:0000055!8.57e-08!69;UBERON:0003081!1.79e-07!216;UBERON:0001981!4.69e-07!60;UBERON:0007500!4.69e-07!60;UBERON:0004537!4.69e-07!60;UBERON:0006965!4.69e-07!60 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;5.22e-09;18!UBERON:0001986;5.22e-09;18!UBERON:0004852;5.22e-09;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,3.06e-10,78;UBERON:0007798,3.06e-10,78;UBERON:0004535,4.50e-10,109;UBERON:0001009,2.73e-09,112;UBERON:0004638,5.86e-09,18;UBERON:0001986,5.86e-09,18;UBERON:0004852,5.86e-09,18;UBERON:0003081,1.13e-08,203;UBERON:0000055,3.90e-08,68;UBERON:0007500,2.11e-07,59;UBERON:0001981,2.11e-07,59;UBERON:0004537,2.11e-07,59;UBERON:0006965,2.11e-07,59;UBERON:0000926,3.94e-07,315;UBERON:0004120,3.94e-07,315;UBERON:0006603,3.94e-07,315 | |||
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| ||
|short_description=p1@TRIM5 | |||
}} | }} |
Latest revision as of 08:43, 18 September 2015
Short description: | p1@TRIM5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRIM5_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000305836, ENST00000380034, ENST00000396847, ENST00000396853, ENST00000396855, ENST00000419850, NM_033034, NM_033092, NM_033093, uc001mbm.1, uc001mbn.2, uc001mbo.2, uc001mbp.2_5end |
EntrezGene: | TRIM5 |
HGNC: | 16276 |
UniProt: | A6NLP3Q9C035F8W6N8C9JWN8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 4.95e-12 | 24 |
blood vessel endothelial cell | 5.86e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.86e-09 | 18 |
lining cell | 1.89e-07 | 58 |
barrier cell | 1.89e-07 | 58 |
endothelial cell | 6.38e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
vasculature | 3.06e-10 | 78 |
vascular system | 3.06e-10 | 78 |
cardiovascular system | 4.50e-10 | 109 |
circulatory system | 2.73e-09 | 112 |
blood vessel endothelium | 5.86e-09 | 18 |
endothelium | 5.86e-09 | 18 |
cardiovascular system endothelium | 5.86e-09 | 18 |
lateral plate mesoderm | 1.13e-08 | 203 |
vessel | 3.90e-08 | 68 |
epithelial tube open at both ends | 2.11e-07 | 59 |
blood vessel | 2.11e-07 | 59 |
blood vasculature | 2.11e-07 | 59 |
vascular cord | 2.11e-07 | 59 |
mesoderm | 3.94e-07 | 315 |
mesoderm-derived structure | 3.94e-07 | 315 |
presumptive mesoderm | 3.94e-07 | 315 |