FFCP PHASE1:Hg19::chr1:204042723..204042784,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9580 | |EntrezGene=9580 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11192 | |HGNC=11192 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UN79 | |UniProt=Q9UN79 | ||
|association_with_transcript=0bp_to_ENST00000367204_5end | |association_with_transcript=0bp_to_ENST00000367204_5end | ||
|cluster_id=chr1:204042723..204042784,+ | |||
|coexpression_cluster_id=C3925 | |||
|description=CAGE_peak_3_at_SOX13_5end | |description=CAGE_peak_3_at_SOX13_5end | ||
|id=chr1:204042723..204042784,+ | |id=chr1:204042723..204042784,+ | ||
|ontology_enrichment_celltype=CL:0000066!7.86e-19!254;CL:0002139!1.58e-10!24;CL:0000115!1.65e-09!35;CL:0000071!6.82e-09!18;CL:0002546!6.82e-09!18;CL:0000076!1.01e-08!62;CL:0000213!3.14e-07!57;CL:0000215!3.14e-07!57;CL:0002078!3.83e-07!44 | |ontology_enrichment_celltype=CL:0000066!7.86e-19!254;CL:0002139!1.58e-10!24;CL:0000115!1.65e-09!35;CL:0000071!6.82e-09!18;CL:0002546!6.82e-09!18;CL:0000076!1.01e-08!62;CL:0000213!3.14e-07!57;CL:0000215!3.14e-07!57;CL:0002078!3.83e-07!44 | ||
|ontology_enrichment_celltype_v019=CL:0002139;1.32e-11;24!CL:0000071;7.82e-10;18!CL:0000115;1.55e-09;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.78e-13,253;CL:0002139,3.88e-12,24;CL:0000115,6.27e-12,36;CL:0000071,4.78e-10,18;CL:0002546,4.78e-10,18;CL:0002078,4.35e-08,45;CL:0000213,1.60e-07,58;CL:0000215,1.60e-07,58;CL:0000076,4.76e-07,63 | |||
|ontology_enrichment_development_v019=CL:0002546;7.82e-10;18 | |||
|ontology_enrichment_disease=DOID:305!2.04e-11!106;DOID:0050687!2.02e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.56e-10,106;DOID:0050687,3.64e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0004111!4.47e-19!241;UBERON:0000477!1.42e-16!286;UBERON:0000483!2.73e-16!309;UBERON:0000119!6.56e-16!312;UBERON:0007023!2.06e-15!115;UBERON:0000025!2.86e-15!194;UBERON:0000468!2.51e-14!659;UBERON:0000467!2.54e-12!625;UBERON:0000064!4.09e-12!219;UBERON:0000480!4.60e-12!626;UBERON:0000475!3.19e-11!365;UBERON:0001986!6.82e-09!18;UBERON:0004638!6.82e-09!18;UBERON:0004852!6.82e-09!18;UBERON:0000062!9.57e-09!511;UBERON:0000922!9.80e-09!612;UBERON:0000481!1.26e-08!347;UBERON:0002050!2.28e-08!605;UBERON:0005423!2.28e-08!605;UBERON:0009569!4.23e-08!113;UBERON:0000923!4.37e-08!604;UBERON:0005291!4.37e-08!604;UBERON:0006598!4.37e-08!604;UBERON:0002532!4.37e-08!604;UBERON:0000466!7.64e-08!126;UBERON:0001049!1.09e-07!57;UBERON:0005068!1.09e-07!57;UBERON:0006241!1.09e-07!57;UBERON:0007135!1.09e-07!57;UBERON:0000077!1.51e-07!130;UBERON:0004921!2.24e-07!129;UBERON:0004185!2.24e-07!129;UBERON:0000487!2.59e-07!22;UBERON:0004119!3.95e-07!169;UBERON:0000925!3.95e-07!169;UBERON:0006595!3.95e-07!169;UBERON:0001041!5.11e-07!98;UBERON:0001007!7.25e-07!155;UBERON:0001555!7.25e-07!155;UBERON:0007026!7.25e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;7.82e-10;18!UBERON:0001986;7.82e-10;18!UBERON:0004852;7.82e-10;18!UBERON:0000487;1.27e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.74e-17,114;UBERON:0004111,1.01e-14,240;UBERON:0000025,3.15e-12,192;UBERON:0004638,4.78e-10,18;UBERON:0001986,4.78e-10,18;UBERON:0004852,4.78e-10,18;UBERON:0000483,1.06e-08,306;UBERON:0000119,2.85e-08,309;UBERON:0000487,8.09e-08,22;UBERON:0001049,3.25e-07,56;UBERON:0005068,3.25e-07,56;UBERON:0006241,3.25e-07,56;UBERON:0007135,3.25e-07,56 | |||
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| ||
|short_description=p3@SOX13 | |short_description=p3@SOX13 | ||
}} | }} |
Latest revision as of 00:12, 20 September 2015
Short description: | p3@SOX13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SOX13_5end |
Coexpression cluster: | C3925_Mast_testicular_breast_choriocarcinoma_Mesenchymal_gastrointestinal_smallcell |
Association with transcript: | 0bp_to_ENST00000367204_5end |
EntrezGene: | SOX13 |
HGNC: | 11192 |
UniProt: | Q9UN79 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.78e-13 | 253 |
endothelial cell of vascular tree | 3.88e-12 | 24 |
endothelial cell | 6.27e-12 | 36 |
blood vessel endothelial cell | 4.78e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.78e-10 | 18 |
meso-epithelial cell | 4.35e-08 | 45 |
lining cell | 1.60e-07 | 58 |
barrier cell | 1.60e-07 | 58 |
squamous epithelial cell | 4.76e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.74e-17 | 114 |
anatomical conduit | 1.01e-14 | 240 |
tube | 3.15e-12 | 192 |
blood vessel endothelium | 4.78e-10 | 18 |
endothelium | 4.78e-10 | 18 |
cardiovascular system endothelium | 4.78e-10 | 18 |
epithelium | 1.06e-08 | 306 |
cell layer | 2.85e-08 | 309 |
simple squamous epithelium | 8.09e-08 | 22 |
neural tube | 3.25e-07 | 56 |
neural rod | 3.25e-07 | 56 |
future spinal cord | 3.25e-07 | 56 |
neural keel | 3.25e-07 | 56 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.56e-10 | 106 |
cell type cancer | 3.64e-07 | 143 |