FFCP PHASE1:Hg19::chr15:55562632..55562652,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5873 | |EntrezGene=5873 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9766 | |HGNC=9766 | ||
|TSSclassifier=strong | |||
|UniProt=P51159,A2RU94 | |UniProt=P51159,A2RU94 | ||
|association_with_transcript=-40bp_to_ENST00000396307,NM_004580_5end | |association_with_transcript=-40bp_to_ENST00000396307,NM_004580_5end | ||
|cluster_id=chr15:55562632..55562652,- | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_7_at_RAB27A_5end | |description=CAGE_peak_7_at_RAB27A_5end | ||
|id=chr15:55562632..55562652,- | |id=chr15:55562632..55562652,- | ||
|ontology_enrichment_celltype=CL:0000147!7.73e-38!14;CL:0000148!2.28e-34!10;CL:0000541!2.28e-34!10;CL:0002567!2.87e-17!3;CL:0000710!1.46e-16!20;CL:0000075!5.74e-15!27;CL:0000325!6.24e-15!39;CL:0000149!2.72e-13!4;CL:0002077!1.55e-09!33;CL:0002586!2.15e-08!3;CL:0002566!4.58e-07!1;CL:0000333!4.98e-07!41 | |ontology_enrichment_celltype=CL:0000147!7.73e-38!14;CL:0000148!2.28e-34!10;CL:0000541!2.28e-34!10;CL:0002567!2.87e-17!3;CL:0000710!1.46e-16!20;CL:0000075!5.74e-15!27;CL:0000325!6.24e-15!39;CL:0000149!2.72e-13!4;CL:0002077!1.55e-09!33;CL:0002586!2.15e-08!3;CL:0002566!4.58e-07!1;CL:0000333!4.98e-07!41 | ||
|ontology_enrichment_celltype_v019=CL:0000147;1.07e-80;14!CL:0000148;8.38e-69;10!CL:0002567;2.05e-42;3!CL:0000710;2.76e-34;20!CL:0000149;1.39e-32;4!CL:0000075;2.60e-25;27!CL:0002586;9.09e-20;3!CL:0002077;9.74e-18;34!CL:0002566;7.46e-16;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000147,9.31e-81,14;CL:0000148,7.59e-69,10;CL:0000541,7.59e-69,10;CL:0002567,1.91e-42,3;CL:0000710,2.63e-34,20;CL:0000149,1.32e-32,4;CL:0000075,2.51e-25,27;CL:0002077,4.92e-20,34;CL:0002586,8.67e-20,3;CL:0002566,7.46e-16,1;CL:0000333,9.44e-16,41;CL:0000133,5.83e-11,59;CL:0000221,6.08e-09,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1909!3.37e-12!2 | |ontology_enrichment_disease=DOID:1909!3.37e-12!2 | ||
|ontology_enrichment_disease_v019=DOID:1909;2.38e-29;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,3.41e-29,2 | |||
|ontology_enrichment_uberon=UBERON:0003056!7.53e-16!61;UBERON:0003075!1.51e-15!86;UBERON:0007284!1.51e-15!86;UBERON:0002346!1.08e-14!90;UBERON:0001049!1.47e-14!57;UBERON:0005068!1.47e-14!57;UBERON:0006241!1.47e-14!57;UBERON:0007135!1.47e-14!57;UBERON:0002616!5.62e-14!59;UBERON:0005743!1.63e-13!86;UBERON:0002780!7.58e-13!41;UBERON:0001890!7.58e-13!41;UBERON:0006240!7.58e-13!41;UBERON:0003080!1.68e-12!42;UBERON:0000073!6.34e-12!94;UBERON:0001016!6.34e-12!94;UBERON:0000955!2.28e-11!69;UBERON:0006238!2.28e-11!69;UBERON:0000966!1.07e-10!5;UBERON:0005388!1.07e-10!5;UBERON:0001802!1.07e-10!5;UBERON:0002298!1.12e-10!8;UBERON:0001893!1.66e-10!34;UBERON:0002021!4.34e-10!5;UBERON:0000033!1.19e-09!123;UBERON:0002308!1.46e-09!9;UBERON:0000125!1.46e-09!9;UBERON:0007023!2.08e-09!115;UBERON:0001017!3.57e-09!82;UBERON:0000153!4.88e-09!129;UBERON:0007811!4.88e-09!129;UBERON:0002791!1.23e-08!33;UBERON:0001781!2.15e-08!3;UBERON:0001782!2.15e-08!3;UBERON:0005424!2.15e-08!3;UBERON:0002020!2.27e-08!34;UBERON:0003528!2.27e-08!34;UBERON:0006331!4.25e-08!3;UBERON:0000988!4.72e-08!3;UBERON:0004121!6.80e-08!169;UBERON:0000924!1.28e-07!173;UBERON:0006601!1.28e-07!173;UBERON:0009663!2.76e-07!7;UBERON:0001869!8.45e-07!32;UBERON:0000989!9.48e-07!1;UBERON:0008811!9.48e-07!1;UBERON:0006258!9.48e-07!1;UBERON:0005876!9.48e-07!1;UBERON:0004874!9.48e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;4.11e-26;5!UBERON:0005388;4.11e-26;5!UBERON:0001802;4.11e-26;5!UBERON:0001781;9.09e-20;3!UBERON:0001782;9.09e-20;3!UBERON:0000970;1.23e-11;20!UBERON:0002104;4.27e-11;21!UBERON:0000020;3.73e-10;23!UBERON:0001032;9.64e-10;24!UBERON:0004456;9.64e-10;24!UBERON:0000019;2.56e-07;19!UBERON:0000047;2.56e-07;19!UBERON:0004088;2.56e-07;19!UBERON:0010230;2.56e-07;19!UBERON:0010371;3.08e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,6.23e-22,6;UBERON:0005388,6.23e-22,6;UBERON:0001802,6.23e-22,6;UBERON:0001782,8.67e-20,3;UBERON:0005424,8.67e-20,3;UBERON:0001781,4.23e-15,4;UBERON:0000970,4.38e-11,21;UBERON:0002104,4.38e-11,21;UBERON:0000020,9.87e-10,24;UBERON:0001032,9.87e-10,24;UBERON:0004456,9.87e-10,24;UBERON:0000019,5.45e-07,20;UBERON:0000047,5.45e-07,20;UBERON:0010312,5.45e-07,20;UBERON:0004088,5.45e-07,20;UBERON:0010230,5.45e-07,20;UBERON:0003072,5.45e-07,20;UBERON:0004128,5.45e-07,20;UBERON:0003071,5.45e-07,20 | |||
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|short_description=p7@RAB27A | |short_description=p7@RAB27A | ||
}} | }} |
Latest revision as of 04:06, 18 September 2015
Short description: | p7@RAB27A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_RAB27A_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | -40bp_to_ENST00000396307, NM_004580_5end |
EntrezGene: | RAB27A |
HGNC: | 9766 |
UniProt: | P51159A2RU94 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 9.31e-81 | 14 |
melanocyte | 7.59e-69 | 10 |
melanoblast | 7.59e-69 | 10 |
light melanocyte | 1.91e-42 | 3 |
neurecto-epithelial cell | 2.63e-34 | 20 |
visual pigment cell | 1.32e-32 | 4 |
columnar/cuboidal epithelial cell | 2.51e-25 | 27 |
ecto-epithelial cell | 4.92e-20 | 34 |
retinal pigment epithelial cell | 8.67e-20 | 3 |
dark melanocyte | 7.46e-16 | 1 |
migratory neural crest cell | 9.44e-16 | 41 |
neurectodermal cell | 5.83e-11 | 59 |
ectodermal cell | 6.08e-09 | 72 |
Ontology term | p-value | n |
---|---|---|
retina | 6.23e-22 | 6 |
photoreceptor array | 6.23e-22 | 6 |
posterior segment of eyeball | 6.23e-22 | 6 |
pigmented layer of retina | 8.67e-20 | 3 |
presumptive retinal pigmented epithelium | 8.67e-20 | 3 |
layer of retina | 4.23e-15 | 4 |
eye | 4.38e-11 | 21 |
visual system | 4.38e-11 | 21 |
sense organ | 9.87e-10 | 24 |
sensory system | 9.87e-10 | 24 |
entire sense organ system | 9.87e-10 | 24 |
camera-type eye | 5.45e-07 | 20 |
simple eye | 5.45e-07 | 20 |
immature eye | 5.45e-07 | 20 |
ocular region | 5.45e-07 | 20 |
eyeball of camera-type eye | 5.45e-07 | 20 |
optic cup | 5.45e-07 | 20 |
optic vesicle | 5.45e-07 | 20 |
eye primordium | 5.45e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
melanoma | 3.41e-29 | 2 |