FFCP PHASE1:Hg19::chr1:156721446..156721494,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3068 | |EntrezGene=3068 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4856 | |HGNC=4856 | ||
|TSSclassifier=strong | |||
|UniProt=P51858 | |UniProt=P51858 | ||
|association_with_transcript=41bp_to_ENST00000357325_5end | |association_with_transcript=41bp_to_ENST00000357325_5end | ||
|cluster_id=chr1:156721446..156721494,- | |||
|coexpression_cluster_id=C3883 | |||
|description=CAGE_peak_1_at_HDGF_5end | |description=CAGE_peak_1_at_HDGF_5end | ||
|id=chr1:156721446..156721494,- | |id=chr1:156721446..156721494,- | ||
|ontology_enrichment_celltype=CL:0000066!8.62e-38!254;CL:0000548!5.25e-28!679;CL:0000004!5.25e-28!679;CL:0000255!5.25e-28!679;CL:0000012!1.96e-27!682;CL:0000220!2.00e-23!246;CL:0002321!3.88e-23!248;CL:0000003!2.97e-18!722;CL:0000063!1.73e-15!578;CL:0000076!9.68e-15!62;CL:0000144!8.28e-11!625;CL:0000223!3.37e-10!59;CL:0000222!6.36e-10!119;CL:0002371!5.44e-09!591;CL:0002076!8.22e-09!43;CL:0000213!6.11e-08!57;CL:0000215!6.11e-08!57 | |ontology_enrichment_celltype=CL:0000066!8.62e-38!254;CL:0000548!5.25e-28!679;CL:0000004!5.25e-28!679;CL:0000255!5.25e-28!679;CL:0000012!1.96e-27!682;CL:0000220!2.00e-23!246;CL:0002321!3.88e-23!248;CL:0000003!2.97e-18!722;CL:0000063!1.73e-15!578;CL:0000076!9.68e-15!62;CL:0000144!8.28e-11!625;CL:0000223!3.37e-10!59;CL:0000222!6.36e-10!119;CL:0002371!5.44e-09!591;CL:0002076!8.22e-09!43;CL:0000213!6.11e-08!57;CL:0000215!6.11e-08!57 | ||
|ontology_enrichment_celltype_v019=CL:0000076;1.41e-07;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.08e-38,253;CL:0002321,4.29e-23,250;CL:0000076,1.24e-14,63;CL:0000223,2.90e-10,58;CL:0000222,7.41e-10,121;CL:0002076,6.75e-09,42;CL:0000213,5.20e-08,58;CL:0000215,5.20e-08,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!3.82e-34!235;DOID:14566!3.36e-33!239;DOID:305!5.73e-19!106;DOID:0050687!1.90e-18!143;DOID:0050686!1.17e-15!137;DOID:1240!5.86e-11!39;DOID:8692!1.14e-10!31;DOID:2531!1.75e-10!51;DOID:0060083!1.75e-10!51 | |||
|ontology_enrichment_disease_v019=DOID:8692;2.03e-10;31!DOID:1240;2.15e-09;39!DOID:2531;3.40e-07;51!DOID:0060083;3.40e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,3.82e-34,235;DOID:14566,3.36e-33,239;DOID:305,5.73e-19,106;DOID:0050687,1.90e-18,143;DOID:0050686,1.17e-15,137;DOID:1240,5.86e-11,39;DOID:8692,1.14e-10,31;DOID:2531,1.75e-10,51;DOID:0060083,1.75e-10,51 | |||
|ontology_enrichment_uberon=UBERON:0003104!1.44e-12!238;UBERON:0009142!1.44e-12!238;UBERON:0004119!8.96e-10!169;UBERON:0000925!8.96e-10!169;UBERON:0006595!8.96e-10!169;UBERON:0002100!9.53e-09!216;UBERON:0003914!3.41e-08!118;UBERON:0000077!8.15e-08!130;UBERON:0001041!1.62e-07!98;UBERON:0001007!1.64e-07!155;UBERON:0001555!1.64e-07!155;UBERON:0007026!1.64e-07!155;UBERON:0005177!1.99e-07!107;UBERON:0008947!2.55e-07!38;UBERON:0003258!2.55e-07!38;UBERON:0000072!4.16e-07!46;UBERON:0001737!4.28e-07!9;UBERON:0000490!5.21e-07!138;UBERON:0009569!5.64e-07!113;UBERON:0005256!5.70e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.26e-07;9!UBERON:0001557;4.26e-07;9!UBERON:0000072;4.64e-07;37!UBERON:0006554;5.55e-07;30!UBERON:0001008;5.55e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,6.37e-10,199;UBERON:0005177,7.88e-09,101;UBERON:0004119,1.13e-08,160;UBERON:0000925,1.13e-08,160;UBERON:0006595,1.13e-08,160;UBERON:0003914,2.52e-08,117;UBERON:0000490,2.65e-08,148;UBERON:0008947,2.55e-07,38;UBERON:0003258,2.55e-07,38;UBERON:0001737,4.28e-07,9;UBERON:0009569,5.65e-07,112;UBERON:0003104,6.46e-07,160;UBERON:0009142,6.46e-07,160;UBERON:0000072,6.97e-07,47 | |||
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| ||
|short_description=p1@HDGF | |short_description=p1@HDGF | ||
}} | }} |
Latest revision as of 17:55, 17 September 2015
Short description: | p1@HDGF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HDGF_5end |
Coexpression cluster: | C3883_Reticulocytes_teratocarcinoma_Renal_transitionalcell_mesothelioma_Tracheal_Alveolar |
Association with transcript: | 41bp_to_ENST00000357325_5end |
EntrezGene: | HDGF |
HGNC: | 4856 |
UniProt: | P51858 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.08e-38 | 253 |
embryonic cell | 4.29e-23 | 250 |
squamous epithelial cell | 1.24e-14 | 63 |
endodermal cell | 2.90e-10 | 58 |
mesodermal cell | 7.41e-10 | 121 |
endo-epithelial cell | 6.75e-09 | 42 |
lining cell | 5.20e-08 | 58 |
barrier cell | 5.20e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
trunk | 6.37e-10 | 199 |
trunk region element | 7.88e-09 | 101 |
endoderm-derived structure | 1.13e-08 | 160 |
endoderm | 1.13e-08 | 160 |
presumptive endoderm | 1.13e-08 | 160 |
epithelial tube | 2.52e-08 | 117 |
unilaminar epithelium | 2.65e-08 | 148 |
respiratory primordium | 2.55e-07 | 38 |
endoderm of foregut | 2.55e-07 | 38 |
larynx | 4.28e-07 | 9 |
subdivision of trunk | 5.65e-07 | 112 |
mesenchyme | 6.46e-07 | 160 |
entire embryonic mesenchyme | 6.46e-07 | 160 |
segment of respiratory tract | 6.97e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
cancer | 3.82e-34 | 235 |
disease of cellular proliferation | 3.36e-33 | 239 |
carcinoma | 5.73e-19 | 106 |
cell type cancer | 1.90e-18 | 143 |
organ system cancer | 1.17e-15 | 137 |
leukemia | 5.86e-11 | 39 |
myeloid leukemia | 1.14e-10 | 31 |
hematologic cancer | 1.75e-10 | 51 |
immune system cancer | 1.75e-10 | 51 |