FFCP PHASE1:Hg19::chr15:33024989..33024999,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26585 | |EntrezGene=26585 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2001 | |HGNC=2001 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=242bp_to_AL359059_5end | |association_with_transcript=242bp_to_AL359059_5end | ||
|cluster_id=chr15:33024989..33024999,+ | |||
|coexpression_cluster_id=C316 | |||
|description=CAGE_peak_17_at_GREM1_5end | |description=CAGE_peak_17_at_GREM1_5end | ||
|id=chr15:33024989..33024999,+ | |id=chr15:33024989..33024999,+ | ||
|ontology_enrichment_celltype=CL:0000055!5.14e-27!180;CL:0000057!3.28e-24!75;CL:0000048!4.30e-17!430;CL:0000723!2.09e-16!436;CL:0000034!1.59e-15!444;CL:0002620!2.39e-14!23;CL:0000680!2.77e-13!57;CL:0000056!2.77e-13!57;CL:0000355!2.77e-13!57;CL:0002334!4.29e-13!12;CL:0000192!5.60e-12!42;CL:0000514!5.60e-12!42;CL:0000187!4.14e-11!54;CL:0000183!1.60e-09!59;CL:0000359!2.13e-09!32;CL:0002371!3.04e-09!591;CL:0000393!3.07e-09!60;CL:0000211!3.07e-09!60;CL:0002539!1.07e-08!10;CL:0002320!1.19e-08!365;CL:0000144!2.93e-08!625;CL:0000134!4.35e-08!358 | |ontology_enrichment_celltype=CL:0000055!5.14e-27!180;CL:0000057!3.28e-24!75;CL:0000048!4.30e-17!430;CL:0000723!2.09e-16!436;CL:0000034!1.59e-15!444;CL:0002620!2.39e-14!23;CL:0000680!2.77e-13!57;CL:0000056!2.77e-13!57;CL:0000355!2.77e-13!57;CL:0002334!4.29e-13!12;CL:0000192!5.60e-12!42;CL:0000514!5.60e-12!42;CL:0000187!4.14e-11!54;CL:0000183!1.60e-09!59;CL:0000359!2.13e-09!32;CL:0002371!3.04e-09!591;CL:0000393!3.07e-09!60;CL:0000211!3.07e-09!60;CL:0002539!1.07e-08!10;CL:0002320!1.19e-08!365;CL:0000144!2.93e-08!625;CL:0000134!4.35e-08!358 | ||
|ontology_enrichment_celltype_v019=CL:0002620;3.75e-19;23!CL:0002334;4.36e-15;12!CL:0002579;3.12e-10;3!CL:0002615;7.64e-10;3!CL:0002580;8.76e-10;3!CL:0000057;3.81e-09;73!CL:0000197;1.74e-08;6!CL:0000098;1.74e-08;6!CL:0002167;1.74e-08;6!CL:0000136;3.66e-08;13!CL:0002539;1.17e-07;10!CL:0002617;3.05e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.32e-26,76;CL:0002620,5.28e-19,23;CL:0002334,3.73e-15,12;CL:0000048,4.02e-11,427;CL:0000723,8.71e-11,433;CL:0000034,2.36e-10,441;CL:0002579,2.45e-10,3;CL:0002580,7.02e-10,3;CL:0002615,9.23e-10,3;CL:0000197,1.64e-08,6;CL:0000098,1.64e-08,6;CL:0002167,1.64e-08,6;CL:0000134,1.78e-08,354;CL:0002320,4.22e-08,361;CL:0002539,1.10e-07,10;CL:0002617,2.13e-07,2;CL:0000219,2.22e-07,386;CL:0000136,5.27e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!7.25e-08!5;DOID:450!7.25e-08!5;DOID:66!7.25e-08!5;DOID:423!7.25e-08!5;DOID:0080000!7.25e-08!5;DOID:11722!7.25e-08!5;DOID:2394!9.32e-07!14 | |ontology_enrichment_disease=DOID:17!7.25e-08!5;DOID:450!7.25e-08!5;DOID:66!7.25e-08!5;DOID:423!7.25e-08!5;DOID:0080000!7.25e-08!5;DOID:11722!7.25e-08!5;DOID:2394!9.32e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:17;5.04e-15;5!DOID:450;5.04e-15;5!DOID:66;5.04e-15;5!DOID:423;5.04e-15;5!DOID:0080000;5.04e-15;5!DOID:11722;5.04e-15;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,8.21e-15,5;DOID:450,8.21e-15,5;DOID:66,8.21e-15,5;DOID:423,8.21e-15,5;DOID:0080000,8.21e-15,5;DOID:11722,8.21e-15,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!7.01e-17!83;UBERON:0002329!7.01e-17!83;UBERON:0003077!7.01e-17!83;UBERON:0003059!7.01e-17!83;UBERON:0007282!7.01e-17!83;UBERON:0009618!7.01e-17!83;UBERON:0007285!7.01e-17!83;UBERON:0004290!4.97e-13!70;UBERON:0000486!2.85e-12!82;UBERON:0001134!7.81e-12!61;UBERON:0002036!7.81e-12!61;UBERON:0003082!7.81e-12!61;UBERON:0005256!3.05e-11!143;UBERON:0002385!3.49e-11!63;UBERON:0001015!3.49e-11!63;UBERON:0000383!3.49e-11!63;UBERON:0002100!9.00e-10!216;UBERON:0002199!9.62e-10!45;UBERON:0002416!9.62e-10!45;UBERON:0001135!1.43e-09!15;UBERON:0003688!1.45e-09!6;UBERON:0002358!1.45e-09!6;UBERON:0003684!1.45e-09!6;UBERON:0001178!1.45e-09!6;UBERON:0002097!1.77e-09!40;UBERON:0000475!4.23e-09!365;UBERON:0003102!7.96e-09!95;UBERON:0004457!8.24e-09!12;UBERON:0000042!8.24e-09!12;UBERON:0004237!1.07e-08!10;UBERON:0004695!1.07e-08!10;UBERON:0002111!1.07e-08!10;UBERON:0004178!1.07e-08!10;UBERON:0002384!1.09e-08!375;UBERON:0002118!4.71e-07!5;UBERON:0004532!4.71e-07!5;UBERON:0004458!5.90e-07!49 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;2.34e-18;6!UBERON:0002358;2.34e-18;6!UBERON:0003684;2.34e-18;6!UBERON:0001178;2.34e-18;6!UBERON:0004457;5.33e-16;9!UBERON:0000042;5.33e-16;9!UBERON:0002097;5.66e-14;41!UBERON:0002199;2.28e-10;46!UBERON:0002416;2.28e-10;46!UBERON:0003102;1.23e-08;50!UBERON:0004237;1.17e-07;10!UBERON:0004695;1.17e-07;10!UBERON:0002111;1.17e-07;10!UBERON:0004178;1.17e-07;10!UBERON:0000310;1.71e-07;10!UBERON:0001443;8.86e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.22e-18,6;UBERON:0002358,2.22e-18,6;UBERON:0003684,2.22e-18,6;UBERON:0001178,2.22e-18,6;UBERON:0002097,5.56e-17,41;UBERON:0002199,1.12e-14,46;UBERON:0002416,1.12e-14,46;UBERON:0004457,8.39e-12,12;UBERON:0000042,8.39e-12,12;UBERON:0003102,3.17e-10,99;UBERON:0004237,1.10e-07,10;UBERON:0004695,1.10e-07,10;UBERON:0002111,1.10e-07,10;UBERON:0004178,1.10e-07,10;UBERON:0000310,1.31e-07,10;UBERON:0002384,1.36e-07,371;UBERON:0001443,6.96e-07,11 | |||
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|short_description=p17@GREM1 | |short_description=p17@GREM1 | ||
}} | }} |
Latest revision as of 04:55, 17 September 2015
Short description: | p17@GREM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_GREM1_5end |
Coexpression cluster: | C316_hepatic_Hair_Fibroblast_spindle_Preadipocyte_tenocyte_Ewing |
Association with transcript: | 242bp_to_AL359059_5end |
EntrezGene: | GREM1 |
HGNC: | 2001 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.32e-26 | 76 |
skin fibroblast | 5.28e-19 | 23 |
preadipocyte | 3.73e-15 | 12 |
multi fate stem cell | 4.02e-11 | 427 |
somatic stem cell | 8.71e-11 | 433 |
stem cell | 2.36e-10 | 441 |
omentum preadipocyte | 2.45e-10 | 3 |
preadipocyte of the breast | 7.02e-10 | 3 |
adipocyte of omentum tissue | 9.23e-10 | 3 |
receptor cell | 1.64e-08 | 6 |
sensory epithelial cell | 1.64e-08 | 6 |
olfactory epithelial cell | 1.64e-08 | 6 |
mesenchymal cell | 1.78e-08 | 354 |
connective tissue cell | 4.22e-08 | 361 |
aortic smooth muscle cell | 1.10e-07 | 10 |
adipocyte of breast | 2.13e-07 | 2 |
motile cell | 2.22e-07 | 386 |
fat cell | 5.27e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
omentum | 2.22e-18 | 6 |
peritoneum | 2.22e-18 | 6 |
abdominal cavity | 2.22e-18 | 6 |
visceral peritoneum | 2.22e-18 | 6 |
skin of body | 5.56e-17 | 41 |
integument | 1.12e-14 | 46 |
integumental system | 1.12e-14 | 46 |
cavity lining | 8.39e-12 | 12 |
serous membrane | 8.39e-12 | 12 |
surface structure | 3.17e-10 | 99 |
blood vessel smooth muscle | 1.10e-07 | 10 |
arterial system smooth muscle | 1.10e-07 | 10 |
artery smooth muscle tissue | 1.10e-07 | 10 |
aorta smooth muscle tissue | 1.10e-07 | 10 |
breast | 1.31e-07 | 10 |
connective tissue | 1.36e-07 | 371 |
chest | 6.96e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 8.21e-15 | 5 |
myotonic disease | 8.21e-15 | 5 |
muscle tissue disease | 8.21e-15 | 5 |
myopathy | 8.21e-15 | 5 |
muscular disease | 8.21e-15 | 5 |
myotonic dystrophy | 8.21e-15 | 5 |