FFCP PHASE1:Hg19::chr11:2153890..2153941,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:2153890..2153941,+
|short_description=p1@BC075845,p2@BC021076
|description=CAGE_peak_1_at_BC075845_5end,CAGE_peak_2_at_BC021076_5end
|association_with_tra...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_BC021076,BC075845_5end | |||
|cluster_id=chr11:2153890..2153941,+ | |||
|coexpression_cluster_id=C172 | |||
|description=CAGE_peak_1_at_BC075845_5end,CAGE_peak_2_at_BC021076_5end | |||
|id=chr11:2153890..2153941,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000349;2.52e-16;19!CL:0000669;2.64e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,2.50e-16,19;CL:0000669,2.74e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!9.37e-12!347;UBERON:0005631!1.42e-11!14;UBERON:0000158!1.42e-11!14;UBERON:0004119!4.48e-10!169;UBERON:0000925!4.48e-10!169;UBERON:0006595!4.48e-10!169;UBERON:0000478!2.68e-09!24;UBERON:0000468!2.89e-09!659;UBERON:0007023!1.70e-08!115;UBERON:0000119!5.76e-08!312;UBERON:0003124!7.73e-08!7;UBERON:0000922!1.24e-07!612;UBERON:0000475!1.63e-07!365;UBERON:0000483!1.96e-07!309;UBERON:0005256!2.70e-07!143;UBERON:0004921!9.83e-07!129;UBERON:0004185!9.83e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;3.91e-16;24!UBERON:0005631;2.17e-11;10!UBERON:0000158;2.17e-11;10!UBERON:0002107;1.18e-08;19!UBERON:0006925;1.18e-08;19!UBERON:0001987;5.93e-08;4!UBERON:0005409;3.50e-07;22!UBERON:0000305;6.07e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.64e-17,14;UBERON:0000158,1.64e-17,14;UBERON:0000478,3.99e-16,24;UBERON:0003124,1.04e-12,7;UBERON:0002107,1.22e-08,19;UBERON:0006925,1.22e-08,19;UBERON:0008836,1.22e-08,19;UBERON:0003104,1.57e-08,160;UBERON:0009142,1.57e-08,160;UBERON:0001987,6.27e-08,4;UBERON:0004340,6.27e-08,4;UBERON:0004119,1.07e-07,160;UBERON:0000925,1.07e-07,160;UBERON:0006595,1.07e-07,160;UBERON:0003929,1.52e-07,54;UBERON:0008835,4.30e-07,22;UBERON:0003894,4.30e-07,22;UBERON:0006554,5.49e-07,47;UBERON:0000305,6.10e-07,7;UBERON:0001008,9.53e-07,48 | |||
|phase1_expression=1.09007027562334,0.428201047781966,0,0,0.446961094427288,5.23403114460221,0,0,0,0.982935746006035,0,22.4994613294077,34.0259401914705,2.22779435328084,0.662794751455832,0,0,0,0,0.61560529038394,1.83600622119828,3.44800193625897,0,0.136874425072884,0,0,0,0,0,0,0.77408061658038,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.462390822334,0,1.45990461090791,0.472674085820339,0,0.527008714158756,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0.258416759169329,0,0,0,0,0,0,2.43042584364528,0.0892997282840798,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0.134710672069688,0.163461903113459,2.72443369760877,7.49028701823999,0.468642863667593,0,0,0,0,0,0,0,0.491337269247072,0.103325781175765,2.37600571456411,2.47266929278557,0,0,0.336672227908132,0.500474079487857,0,0,0,0.45071417671979,0.567160915800105,0,0.640672166455702,0,0,0,0,0,0.168776332241266,0,0,0,0.646584227275248,0,0,0.339121184620975,0,0,0,0,0,1.51052125730374,1.0366105501537,0.756962552626885,0,0,0,0,13.9310378409594,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,1.47008711385542,5.07020139287323,0.982827216677626,2.36315962672562,0,21.7689536221311,0,0,0,0,0.462942225792648,0,0,1.44331342025273,0.811512834825538,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,5.23152082599936,0.07333828582095,0,0,0,0.797814349754612,0,1.02882949704857,1.41849132023278,0.532844358032199,3.57444984145369,43.9523500367069,3.29296134712308,0,5.68627117988073,3.16780749173372,0,0,0,0,0,0,0,0,0,0.723906533337896,1.64381058040307,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,9.32455337065463,6.5022167737758,3.25518028439683,3.32753378449291,5.70972764150918,3.15404830067869,3.39710103478868,0,0,8.27784570340039,0,0.368738337083406,0,30.936582879113,70.0012584574146,0,0,0,9.09382714338778,23.3009615314696,56.2445945593205,0,1.38115775959256,0.841980283299221,0,1.02341449813341,0.482561763430822,0,0,0,0.0821271560138091,0,0,19.7000902834344,0.40101294060657,0.0920809889358963,1.14814448164607,1.45672934405374,2.62248829918848,0.451199612907412,0.770153371044148,0,0,0.105551628892876,0,0,1.29549549661284,1.54227252690289,2.70946437543853,2.00675909541941,0,0,0.223874754722178,0.219259876645935,0.522870902049801,0,0,0,5.25509159403384,0.0915694648183434,0.082509499920588,0,0,0,0.580024309752732,0.462145851343933,0.460511024178389,1.24052915236078,0.214840489736547,0.435050081742686,0.93749290157711,19.9431759848692,0.495854746082934,0.768760269460425,0.255225424989168,0.50578890427775,0,0.31481234683064,0,0,0,0,0,0,0.744316738719335,4.11293252134344,1.71567174531442,0.511795582622668,1.71175595213568,0,0,2.51821440616641,0.823611089208164,1.06031162111118,0,0,0,1.95053495635836,0,0,2.45699840534374,0,0,0,0,0,0,0.655894752046633,0,0,0,1.86434757865267,6.68093478889224,0,0,0,0.329294892959902,0,0.699869440489966,0,0,0,3.67160823029439,3.01353760869861,1.68471475667626,3.10401107475673,8.27004240745054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0.568272293612826,64.2222663944386,45.1386314865611,47.9170695274802,0,0.281338832821026,0,0,1.47787785689595,0.796991953004279,0.276283915531148,0,0,0,0,0,0,0,0.690503839458535,0,0,0,0.185536196323703,0,0,0,0,0,0,0,1.03423011972439,0,0,0,0,0,0.221158519862449,0,0.219385397153973,0,0,1.07730361905316,0,4.6112780877612,0,0,83.259302690031,3.93869651628008,133.791728780677,0,0,0,0,0,0,0,0,0,0,1.55488378577335,0,0,0.0884575645033392,0.611030144933625,0,0,0,0.471807930864739,24.8799070662625,0,0,0,0,0,9.67925728389311,0,3.60163503882381,0,0,0,0,0,0,0,0,0,0,0,1.04836000945218,0.171986032471617,0,0,0,0.581934098930517,0.264768380074501,14.4627674099541,0,0,0.126621591911757,0,0,0,11.5889573557636,0,0,27.2836046600524,0,0,0,0.135904206073614,0,0.101998217636322,0,0,0.136905378891993,0,0,0,0.558564802544508,0.229160424011684,1.43574604915363,0.998395002494955,1.28767814440971,0,5.64341168888501,0,0,37.5007947782385,27.3620649825473,33.162543576259,12.6971451154026,0,0,0.136203406111576,0,0,0,0,0,0.121499113316049,0,0.0788057072991982,2.09818352539992,0.528001682597033,0,0,0.714695326373367,2.64836788146173,0,0,0,0.326587360109409,0,0,0,0.566560457600628,2.05173127149315,35.7768600062998,0.129282956361551,0.26446520348538,0,0,0.320362237703084,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0.250381861413,1.72022758707021,0.776503360757966,0,0,0,0,0,0.705797459094515,0,0.28984205722165,0,0,0,0,0.50313580350515,0,0,0,0,0,0.159296767163702,0.449803112163605,0,0,0,0,0,0,0,0,0,0,1.59238355479446,4.80033317595784,0,0,0,0,0.214441591374926,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,1.24415452006595,0,0,0,0.436838552768056,0,0,0,0,0,0,0,3.17408349321616,1.8374728641192,0.128458450192919,0,0,0,0.756215088665154,0.0691572524642179,0,0,0,0,0,0,0,0,4.57507310867432,0.902523940191087,0,2.34454203369928,0,0,0,0.0675375846183947,0,0.206686796501184,0.0634158101939068,0.546974809018219,0,0.992422356778588,0,0,0,0,0.606965604236632,0.682986574053893,8.24932042512541,0,0,0.339848664884159,0,0,0.111231401892069,0.470958557103084,0,4.48435461302062,7.30526976407596,0,0,2.93053831124291,0,0,15.1256696903244,0,0,0,0,0,0,0,0,0.9164274741762,0,0,0,0,0.975343399858155,0.647428837187895,0.410651227424988,35.9542473714842,0.971421986118279,0,8.7538341071002,0,0,0,0,0.231522474323834,4.5897507705831,0,1.71603825227734,0.235676547101626,2.35570160537934,0,1.2679671827502,0,0.281951753939561,0.837952543656503,0,0,0,0,2.19100916473955,0,1.00337708206016,1.26217249754548,0.135982980381829,1.30905207102113,7.40637576721561,0,0.924351257262837,1.73050624849516,0,0,0,0,0,0,0,0.757786982182394,0.535928260312357,0.829169439458779,0.517164979309476,0.639701945702943,27.6154740497939,0.0645889098360061,1.05527014302958,0,0.12729431655633,7.88257036937055,0.435433495793923,89.6651248843436,0.134704106029175,0.430333232356058,11.3104521225645,0.651226148887796,0,0,6.37758934956767,21.1176848163109,0.488965776731466,8.54481974463051,0.665756774185513,0.805095174364105,0 | |phase1_expression=1.09007027562334,0.428201047781966,0,0,0.446961094427288,5.23403114460221,0,0,0,0.982935746006035,0,22.4994613294077,34.0259401914705,2.22779435328084,0.662794751455832,0,0,0,0,0.61560529038394,1.83600622119828,3.44800193625897,0,0.136874425072884,0,0,0,0,0,0,0.77408061658038,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.462390822334,0,1.45990461090791,0.472674085820339,0,0.527008714158756,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0.258416759169329,0,0,0,0,0,0,2.43042584364528,0.0892997282840798,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0.134710672069688,0.163461903113459,2.72443369760877,7.49028701823999,0.468642863667593,0,0,0,0,0,0,0,0.491337269247072,0.103325781175765,2.37600571456411,2.47266929278557,0,0,0.336672227908132,0.500474079487857,0,0,0,0.45071417671979,0.567160915800105,0,0.640672166455702,0,0,0,0,0,0.168776332241266,0,0,0,0.646584227275248,0,0,0.339121184620975,0,0,0,0,0,1.51052125730374,1.0366105501537,0.756962552626885,0,0,0,0,13.9310378409594,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,1.47008711385542,5.07020139287323,0.982827216677626,2.36315962672562,0,21.7689536221311,0,0,0,0,0.462942225792648,0,0,1.44331342025273,0.811512834825538,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,5.23152082599936,0.07333828582095,0,0,0,0.797814349754612,0,1.02882949704857,1.41849132023278,0.532844358032199,3.57444984145369,43.9523500367069,3.29296134712308,0,5.68627117988073,3.16780749173372,0,0,0,0,0,0,0,0,0,0.723906533337896,1.64381058040307,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,9.32455337065463,6.5022167737758,3.25518028439683,3.32753378449291,5.70972764150918,3.15404830067869,3.39710103478868,0,0,8.27784570340039,0,0.368738337083406,0,30.936582879113,70.0012584574146,0,0,0,9.09382714338778,23.3009615314696,56.2445945593205,0,1.38115775959256,0.841980283299221,0,1.02341449813341,0.482561763430822,0,0,0,0.0821271560138091,0,0,19.7000902834344,0.40101294060657,0.0920809889358963,1.14814448164607,1.45672934405374,2.62248829918848,0.451199612907412,0.770153371044148,0,0,0.105551628892876,0,0,1.29549549661284,1.54227252690289,2.70946437543853,2.00675909541941,0,0,0.223874754722178,0.219259876645935,0.522870902049801,0,0,0,5.25509159403384,0.0915694648183434,0.082509499920588,0,0,0,0.580024309752732,0.462145851343933,0.460511024178389,1.24052915236078,0.214840489736547,0.435050081742686,0.93749290157711,19.9431759848692,0.495854746082934,0.768760269460425,0.255225424989168,0.50578890427775,0,0.31481234683064,0,0,0,0,0,0,0.744316738719335,4.11293252134344,1.71567174531442,0.511795582622668,1.71175595213568,0,0,2.51821440616641,0.823611089208164,1.06031162111118,0,0,0,1.95053495635836,0,0,2.45699840534374,0,0,0,0,0,0,0.655894752046633,0,0,0,1.86434757865267,6.68093478889224,0,0,0,0.329294892959902,0,0.699869440489966,0,0,0,3.67160823029439,3.01353760869861,1.68471475667626,3.10401107475673,8.27004240745054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0.568272293612826,64.2222663944386,45.1386314865611,47.9170695274802,0,0.281338832821026,0,0,1.47787785689595,0.796991953004279,0.276283915531148,0,0,0,0,0,0,0,0.690503839458535,0,0,0,0.185536196323703,0,0,0,0,0,0,0,1.03423011972439,0,0,0,0,0,0.221158519862449,0,0.219385397153973,0,0,1.07730361905316,0,4.6112780877612,0,0,83.259302690031,3.93869651628008,133.791728780677,0,0,0,0,0,0,0,0,0,0,1.55488378577335,0,0,0.0884575645033392,0.611030144933625,0,0,0,0.471807930864739,24.8799070662625,0,0,0,0,0,9.67925728389311,0,3.60163503882381,0,0,0,0,0,0,0,0,0,0,0,1.04836000945218,0.171986032471617,0,0,0,0.581934098930517,0.264768380074501,14.4627674099541,0,0,0.126621591911757,0,0,0,11.5889573557636,0,0,27.2836046600524,0,0,0,0.135904206073614,0,0.101998217636322,0,0,0.136905378891993,0,0,0,0.558564802544508,0.229160424011684,1.43574604915363,0.998395002494955,1.28767814440971,0,5.64341168888501,0,0,37.5007947782385,27.3620649825473,33.162543576259,12.6971451154026,0,0,0.136203406111576,0,0,0,0,0,0.121499113316049,0,0.0788057072991982,2.09818352539992,0.528001682597033,0,0,0.714695326373367,2.64836788146173,0,0,0,0.326587360109409,0,0,0,0.566560457600628,2.05173127149315,35.7768600062998,0.129282956361551,0.26446520348538,0,0,0.320362237703084,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0.250381861413,1.72022758707021,0.776503360757966,0,0,0,0,0,0.705797459094515,0,0.28984205722165,0,0,0,0,0.50313580350515,0,0,0,0,0,0.159296767163702,0.449803112163605,0,0,0,0,0,0,0,0,0,0,1.59238355479446,4.80033317595784,0,0,0,0,0.214441591374926,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,1.24415452006595,0,0,0,0.436838552768056,0,0,0,0,0,0,0,3.17408349321616,1.8374728641192,0.128458450192919,0,0,0,0.756215088665154,0.0691572524642179,0,0,0,0,0,0,0,0,4.57507310867432,0.902523940191087,0,2.34454203369928,0,0,0,0.0675375846183947,0,0.206686796501184,0.0634158101939068,0.546974809018219,0,0.992422356778588,0,0,0,0,0.606965604236632,0.682986574053893,8.24932042512541,0,0,0.339848664884159,0,0,0.111231401892069,0.470958557103084,0,4.48435461302062,7.30526976407596,0,0,2.93053831124291,0,0,15.1256696903244,0,0,0,0,0,0,0,0,0.9164274741762,0,0,0,0,0.975343399858155,0.647428837187895,0.410651227424988,35.9542473714842,0.971421986118279,0,8.7538341071002,0,0,0,0,0.231522474323834,4.5897507705831,0,1.71603825227734,0.235676547101626,2.35570160537934,0,1.2679671827502,0,0.281951753939561,0.837952543656503,0,0,0,0,2.19100916473955,0,1.00337708206016,1.26217249754548,0.135982980381829,1.30905207102113,7.40637576721561,0,0.924351257262837,1.73050624849516,0,0,0,0,0,0,0,0.757786982182394,0.535928260312357,0.829169439458779,0.517164979309476,0.639701945702943,27.6154740497939,0.0645889098360061,1.05527014302958,0,0.12729431655633,7.88257036937055,0.435433495793923,89.6651248843436,0.134704106029175,0.430333232356058,11.3104521225645,0.651226148887796,0,0,6.37758934956767,21.1176848163109,0.488965776731466,8.54481974463051,0.665756774185513,0.805095174364105,0 | ||
|short_description=p1@BC075845,p2@BC021076 | |||
}} | }} |
Latest revision as of 21:01, 23 July 2015
Short description: | p1@BC075845, p2@BC021076 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BC075845_5end, CAGE_peak_2_at_BC021076_5end |
Coexpression cluster: | C172_chorionic_skeletal_tongue_amniotic_liver_gastrointestinal_Pericytes |
Association with transcript: | 0bp_to_BC021076, BC075845_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 2.50e-16 | 19 |
pericyte cell | 2.74e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.64e-17 | 14 |
membranous layer | 1.64e-17 | 14 |
extraembryonic structure | 3.99e-16 | 24 |
chorion | 1.04e-12 | 7 |
liver | 1.22e-08 | 19 |
digestive gland | 1.22e-08 | 19 |
liver bud | 1.22e-08 | 19 |
mesenchyme | 1.57e-08 | 160 |
entire embryonic mesenchyme | 1.57e-08 | 160 |
placenta | 6.27e-08 | 4 |
allantois | 6.27e-08 | 4 |
endoderm-derived structure | 1.07e-07 | 160 |
endoderm | 1.07e-07 | 160 |
presumptive endoderm | 1.07e-07 | 160 |
gut epithelium | 1.52e-07 | 54 |
hepatic diverticulum | 4.30e-07 | 22 |
liver primordium | 4.30e-07 | 22 |
urinary system structure | 5.49e-07 | 47 |
amnion | 6.10e-07 | 7 |
renal system | 9.53e-07 | 48 |