FFCP PHASE1:Hg19::chr14:60074147..60074162,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6252 | |EntrezGene=6252 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10467 | |HGNC=10467 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=162bp_to_ENST00000474911_5end | |association_with_transcript=162bp_to_ENST00000474911_5end | ||
|cluster_id=chr14:60074147..60074162,- | |||
|coexpression_cluster_id=C1395 | |||
|description=CAGE_peak_12_at_RTN1_5end | |description=CAGE_peak_12_at_RTN1_5end | ||
|id=chr14:60074147..60074162,- | |id=chr14:60074147..60074162,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.84e-35;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.02e-73!57;UBERON:0005068!1.02e-73!57;UBERON:0006241!1.02e-73!57;UBERON:0007135!1.02e-73!57;UBERON:0001017!1.09e-72!82;UBERON:0005743!9.83e-69!86;UBERON:0002616!6.66e-67!59;UBERON:0000073!1.10e-63!94;UBERON:0001016!1.10e-63!94;UBERON:0002020!3.63e-61!34;UBERON:0003528!3.63e-61!34;UBERON:0000955!4.53e-61!69;UBERON:0006238!4.53e-61!69;UBERON:0001893!1.01e-60!34;UBERON:0002780!6.26e-60!41;UBERON:0001890!6.26e-60!41;UBERON:0006240!6.26e-60!41;UBERON:0002791!2.21e-58!33;UBERON:0003080!2.63e-58!42;UBERON:0001869!1.86e-56!32;UBERON:0003075!3.41e-52!86;UBERON:0007284!3.41e-52!86;UBERON:0002346!2.49e-49!90;UBERON:0000956!2.28e-40!25;UBERON:0000203!2.28e-40!25;UBERON:0003056!7.90e-40!61;UBERON:0002619!3.19e-38!22;UBERON:0001950!4.15e-38!20;UBERON:0007023!9.00e-33!115;UBERON:0000033!1.16e-32!123;UBERON:0004121!4.94e-31!169;UBERON:0000153!1.39e-30!129;UBERON:0007811!1.39e-30!129;UBERON:0000924!5.29e-30!173;UBERON:0006601!5.29e-30!173;UBERON:0002308!1.98e-22!9;UBERON:0000125!1.98e-22!9;UBERON:0002420!1.21e-17!9;UBERON:0007245!1.21e-17!9;UBERON:0010009!1.21e-17!9;UBERON:0010011!1.21e-17!9;UBERON:0000454!1.21e-17!9;UBERON:0009663!1.28e-17!7;UBERON:0000025!2.27e-17!194;UBERON:0003076!5.91e-16!15;UBERON:0003057!5.91e-16!15;UBERON:0002021!3.20e-14!5;UBERON:0001872!9.71e-14!5;UBERON:0004733!4.62e-13!12;UBERON:0002028!4.62e-13!12;UBERON:0007277!4.62e-13!12;UBERON:0004732!6.14e-12!13;UBERON:0001871!8.24e-12!7;UBERON:0004111!1.13e-11!241;UBERON:0000369!4.24e-11!4;UBERON:0002435!4.24e-11!4;UBERON:0000204!4.24e-11!4;UBERON:0010082!4.24e-11!4;UBERON:0000200!4.96e-11!6;UBERON:0002298!6.29e-11!8;UBERON:0000064!9.05e-11!219;UBERON:0002680!1.42e-10!9;UBERON:0001895!1.42e-10!9;UBERON:0010092!1.42e-10!9;UBERON:0000477!2.53e-09!286;UBERON:0000483!7.30e-09!309;UBERON:0005383!7.97e-09!3;UBERON:0005382!7.97e-09!3;UBERON:0000119!1.15e-08!312;UBERON:0006331!1.24e-08!3;UBERON:0000988!1.41e-08!3;UBERON:0002771!1.41e-08!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002021;3.84e-22;5!UBERON:0002791;1.25e-21;32!UBERON:0003528;2.79e-21;34!UBERON:0002020;2.79e-21;34!UBERON:0002680;7.95e-21;9!UBERON:0001895;7.95e-21;9!UBERON:0001869;1.14e-20;32!UBERON:0001950;3.83e-20;20!UBERON:0000955;3.87e-19;68!UBERON:0002619;2.29e-18;22!UBERON:0002037;5.30e-18;6!UBERON:0001893;6.48e-18;34!UBERON:0000956;3.26e-16;25!UBERON:0000203;3.26e-16;25!UBERON:0004733;1.05e-15;12!UBERON:0002028;1.05e-15;12!UBERON:0001017;1.12e-15;75!UBERON:0000073;1.30e-15;53!UBERON:0002616;1.30e-15;53!UBERON:0004732;1.61e-14;13!UBERON:0001874;7.24e-13;1!UBERON:0003112;7.24e-13;1!UBERON:0011158;7.24e-13;1!UBERON:0003128;7.24e-13;1!UBERON:0001703;7.24e-13;1!UBERON:0002241;7.24e-13;1!UBERON:0001016;9.42e-13;83!UBERON:0002780;1.40e-12;41!UBERON:0001890;1.40e-12;41!UBERON:0000125;4.06e-12;9!UBERON:0002308;4.06e-12;9!UBERON:0001871;8.08e-08;6!UBERON:0009663;1.63e-07;7!UBERON:0002771;2.58e-07;2!UBERON:0011216;2.90e-07;132!UBERON:0002148;4.55e-07;2!UBERON:0001875;4.55e-07;2!UBERON:0006331;4.55e-07;2!UBERON:0009662;4.55e-07;2!UBERON:0006514;4.55e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000955,5.86e-31,68;UBERON:0006238,5.86e-31,68;UBERON:0001017,8.43e-30,81;UBERON:0000073,1.29e-29,53;UBERON:0002616,1.29e-29,53;UBERON:0001049,5.56e-28,56;UBERON:0005068,5.56e-28,56;UBERON:0006241,5.56e-28,56;UBERON:0007135,5.56e-28,56;UBERON:0001016,1.03e-26,89;UBERON:0003528,4.35e-26,34;UBERON:0002020,4.35e-26,34;UBERON:0002021,3.57e-22,5;UBERON:0002791,4.92e-22,32;UBERON:0001869,4.92e-22,32;UBERON:0002680,7.75e-21,9;UBERON:0001895,7.75e-21,9;UBERON:0010092,7.75e-21,9;UBERON:0001893,9.89e-21,34;UBERON:0001950,3.83e-20,20;UBERON:0003075,9.59e-19,82;UBERON:0007284,9.59e-19,82;UBERON:0002619,2.29e-18,22;UBERON:0002037,4.20e-18,6;UBERON:0006215,4.20e-18,6;UBERON:0002346,8.22e-18,86;UBERON:0002780,3.81e-17,41;UBERON:0001890,3.81e-17,41;UBERON:0003080,3.81e-17,41;UBERON:0006240,3.81e-17,41;UBERON:0000956,3.26e-16,25;UBERON:0000203,3.26e-16,25;UBERON:0004733,1.04e-15,12;UBERON:0002028,1.04e-15,12;UBERON:0007277,1.04e-15,12;UBERON:0004732,1.59e-14,13;UBERON:0010371,1.73e-14,104;UBERON:0004121,3.08e-13,171;UBERON:0000924,3.08e-13,171;UBERON:0006601,3.08e-13,171;UBERON:0010314,3.73e-13,132;UBERON:0007023,3.91e-13,114;UBERON:0011216,6.05e-13,223;UBERON:0003112,6.82e-13,1;UBERON:0011158,6.82e-13,1;UBERON:0003128,6.82e-13,1;UBERON:0001703,6.82e-13,1;UBERON:0002241,6.82e-13,1;UBERON:0004761,6.82e-13,1;UBERON:0009617,6.82e-13,1;UBERON:0001874,9.73e-13,1;UBERON:0003076,1.26e-12,15;UBERON:0003057,1.26e-12,15;UBERON:0000125,5.41e-12,9;UBERON:0002308,5.41e-12,9;UBERON:0003056,2.40e-11,61;UBERON:0001871,8.35e-08,6;UBERON:0009663,1.86e-07,7;UBERON:0002771,2.74e-07,2;UBERON:0000025,4.01e-07,192;UBERON:0005253,4.42e-07,2;UBERON:0001875,4.98e-07,2;UBERON:0006514,4.98e-07,2;UBERON:0002148,5.60e-07,2;UBERON:0006331,5.60e-07,2;UBERON:0009662,5.60e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.251085279189606,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0.234004265139238,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0.508189248444927,0,0.773288812777695,0.335032530668698,1.27587750330633,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0.844016498463076,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0,0,0,3.87733098438087,1.76259386507517,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.361789315876224,1.52581736317083,1.76926815889959,2.36438095162838,0.87754158861589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0.468528891450678,0,0,0,0,0,6.42752799424029,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.759729551470544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20084057741958,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.425246896606173,0,0,0,0,0.537862017998534,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,1.05786081394152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.75902433117656,0.250381861413,0,0.332787154610557,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327628914576042,0,0,0,0,0,0,0,0,0,0.449604575675217,2.8339315265117,0.638535436228605,9.43535275507473,4.78936222821264,0.414943514785307,1.45328081068666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472763092328763,0.781078098613847,0.826747186004736,0.380494861163441,2.7348740450911,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0.271878931907327,0.855046056317038,0,0,0,1.09980912941201,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0.109940516745429,0,0,0.437119121007915,0.470317296361523,0,0,0.981542335574726,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.611923411718232,4.79985759374415,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.251085279189606,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0.234004265139238,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0.508189248444927,0,0.773288812777695,0.335032530668698,1.27587750330633,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,0,0.844016498463076,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0,0,0,3.87733098438087,1.76259386507517,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.361789315876224,1.52581736317083,1.76926815889959,2.36438095162838,0.87754158861589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0.468528891450678,0,0,0,0,0,6.42752799424029,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.759729551470544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20084057741958,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.425246896606173,0,0,0,0,0.537862017998534,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,1.05786081394152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.75902433117656,0.250381861413,0,0.332787154610557,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327628914576042,0,0,0,0,0,0,0,0,0,0.449604575675217,2.8339315265117,0.638535436228605,9.43535275507473,4.78936222821264,0.414943514785307,1.45328081068666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472763092328763,0.781078098613847,0.826747186004736,0.380494861163441,2.7348740450911,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0.271878931907327,0.855046056317038,0,0,0,1.09980912941201,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0.109940516745429,0,0,0.437119121007915,0.470317296361523,0,0,0.981542335574726,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.611923411718232,4.79985759374415,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p12@RTN1 | |short_description=p12@RTN1 | ||
}} | }} |
Latest revision as of 19:51, 24 September 2015
Short description: | p12@RTN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_RTN1_5end |
Coexpression cluster: | C1395_temporal_occipital_duodenum_parietal_medial_cerebellum_brain |
Association with transcript: | 162bp_to_ENST00000474911_5end |
EntrezGene: | RTN1 |
HGNC: | 10467 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data