FFCP PHASE1:Hg19::chr19:54676884..54676893,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=147798 | |EntrezGene=147798 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22998 | |HGNC=22998 | ||
|TSSclassifier=strong | |||
|UniProt=Q7Z404 | |UniProt=Q7Z404 | ||
|association_with_transcript=-19bp_to_ENST00000301187_5end | |association_with_transcript=-19bp_to_ENST00000301187_5end | ||
|cluster_id=chr19:54676884..54676893,- | |||
|coexpression_cluster_id=C3821 | |||
|description=CAGE_peak_2_at_TMC4_5end | |description=CAGE_peak_2_at_TMC4_5end | ||
|id=chr19:54676884..54676893,- | |id=chr19:54676884..54676893,- | ||
|ontology_enrichment_celltype=CL:0000066!5.09e-20!254;CL:0002076!3.68e-19!43;CL:0000223!1.42e-13!59;CL:0002368!2.38e-13!13;CL:0002202!1.65e-08!9;CL:0002632!1.65e-08!9;CL:0000244!6.34e-07!4;CL:0000731!6.34e-07!4 | |ontology_enrichment_celltype=CL:0000066!5.09e-20!254;CL:0002076!3.68e-19!43;CL:0000223!1.42e-13!59;CL:0002368!2.38e-13!13;CL:0002202!1.65e-08!9;CL:0002632!1.65e-08!9;CL:0000244!6.34e-07!4;CL:0000731!6.34e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002368;1.60e-15;13!CL:0002076;5.75e-15;42!CL:0000244;2.07e-10;4!CL:0000731;2.07e-10;4!CL:0002202;2.31e-08;9!CL:0002632;2.31e-08;9!CL:0000307;3.55e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,3.37e-19,42;CL:0002368,2.15e-15,13;CL:0000223,5.67e-15,58;CL:0000066,2.33e-12,253;CL:0000244,1.95e-10,4;CL:0000731,1.95e-10,4;CL:0002202,4.57e-08,9;CL:0002632,4.57e-08,9;CL:0000068,4.76e-07,3;CL:0000069,4.76e-07,3;CL:0000307,4.76e-07,3;CL:0000377,4.76e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;7.36e-09;58!CL:0000377;3.55e-07;3 | |||
|ontology_enrichment_disease=DOID:305!4.19e-18!106;DOID:0050687!1.25e-12!143;DOID:299!1.06e-10!25;DOID:1749!5.12e-10!14 | |||
|ontology_enrichment_disease_v019=DOID:299;8.78e-10;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.67e-11,106;DOID:299,7.97e-10,25;DOID:0050687,8.63e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.93e-24!169;UBERON:0000925!1.93e-24!169;UBERON:0006595!1.93e-24!169;UBERON:0001007!4.23e-19!155;UBERON:0001555!4.23e-19!155;UBERON:0007026!4.23e-19!155;UBERON:0004921!1.63e-17!129;UBERON:0004185!1.63e-17!129;UBERON:0000464!2.84e-14!104;UBERON:0001004!3.28e-14!72;UBERON:0000077!9.23e-14!130;UBERON:0000466!8.11e-13!126;UBERON:0000065!3.09e-12!53;UBERON:0005911!3.84e-12!82;UBERON:0005153!1.68e-11!37;UBERON:0005178!2.41e-11!34;UBERON:0002224!2.41e-11!34;UBERON:0005181!7.69e-11!35;UBERON:0005157!3.85e-10!51;UBERON:0001041!7.67e-10!98;UBERON:0000915!1.65e-08!52;UBERON:0005156!1.89e-08!59;UBERON:0000990!1.89e-08!59;UBERON:0005177!2.29e-08!107;UBERON:0002048!3.35e-08!22;UBERON:0000117!3.35e-08!22;UBERON:0000171!3.35e-08!22;UBERON:0000170!3.35e-08!22;UBERON:0005597!3.35e-08!22;UBERON:0000118!3.35e-08!22;UBERON:0007196!5.35e-08!14;UBERON:0001558!5.35e-08!14;UBERON:0000365!1.04e-07!5;UBERON:0008947!1.47e-07!38;UBERON:0003258!1.47e-07!38;UBERON:0003101!2.18e-07!22;UBERON:0000079!2.18e-07!22;UBERON:0003133!2.32e-07!48;UBERON:0003135!2.60e-07!11;UBERON:0000072!2.64e-07!46;UBERON:0009569!2.93e-07!113;UBERON:0006554!8.04e-07!44;UBERON:0000161!8.21e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;2.16e-09;33!UBERON:0006947;1.80e-08;3!UBERON:0004054;1.80e-08;3!UBERON:0007196;2.18e-08;15!UBERON:0001558;2.18e-08;15!UBERON:0000365;2.69e-08;5!UBERON:0005178;4.27e-08;34!UBERON:0002224;4.27e-08;34!UBERON:0003126;5.68e-08;7!UBERON:0001005;5.68e-08;7!UBERON:0002108;8.69e-08;4!UBERON:0005409;1.71e-07;22!UBERON:0005181;2.09e-07;35!UBERON:0000065;4.66e-07;44!UBERON:0004175;5.84e-07;21!UBERON:0005910;6.94e-07;6!UBERON:0002110;8.00e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.55e-20,160;UBERON:0000925,4.55e-20,160;UBERON:0006595,4.55e-20,160;UBERON:0001007,4.80e-14,145;UBERON:0001555,4.80e-14,145;UBERON:0007026,4.80e-14,145;UBERON:0004921,4.91e-11,118;UBERON:0001004,4.98e-11,74;UBERON:0005178,3.52e-09,34;UBERON:0002224,3.52e-09,34;UBERON:0005181,7.98e-09,35;UBERON:0000065,1.33e-08,54;UBERON:0006947,1.85e-08,3;UBERON:0004054,1.85e-08,3;UBERON:0000365,2.56e-08,5;UBERON:0007196,3.84e-08,15;UBERON:0001558,3.84e-08,15;UBERON:0003126,7.33e-08,7;UBERON:0001005,7.33e-08,7;UBERON:0002108,8.43e-08,4;UBERON:0005177,9.11e-08,101;UBERON:0005911,3.32e-07,82;UBERON:0000160,6.00e-07,17;UBERON:0005910,6.67e-07,6 | |||
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|short_description=p2@TMC4 | |short_description=p2@TMC4 | ||
}} | }} |
Latest revision as of 21:15, 19 September 2015
Short description: | p2@TMC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TMC4_5end |
Coexpression cluster: | C3821_lung_seminal_small_salivary_parotid_ductus_colon |
Association with transcript: | -19bp_to_ENST00000301187_5end |
EntrezGene: | TMC4 |
HGNC: | 22998 |
UniProt: | Q7Z404 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 3.37e-19 | 42 |
respiratory epithelial cell | 2.15e-15 | 13 |
endodermal cell | 5.67e-15 | 58 |
epithelial cell | 2.33e-12 | 253 |
transitional epithelial cell | 1.95e-10 | 4 |
urothelial cell | 1.95e-10 | 4 |
epithelial cell of tracheobronchial tree | 4.57e-08 | 9 |
epithelial cell of lower respiratory tract | 4.57e-08 | 9 |
duct epithelial cell | 4.76e-07 | 3 |
branched duct epithelial cell | 4.76e-07 | 3 |
tracheal epithelial cell | 4.76e-07 | 3 |
tracheoblast | 4.76e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 4.55e-20 | 160 |
endoderm | 4.55e-20 | 160 |
presumptive endoderm | 4.55e-20 | 160 |
digestive system | 4.80e-14 | 145 |
digestive tract | 4.80e-14 | 145 |
primitive gut | 4.80e-14 | 145 |
subdivision of digestive tract | 4.91e-11 | 118 |
respiratory system | 4.98e-11 | 74 |
thoracic cavity element | 3.52e-09 | 34 |
thoracic cavity | 3.52e-09 | 34 |
thoracic segment organ | 7.98e-09 | 35 |
respiratory tract | 1.33e-08 | 54 |
male genital duct | 1.85e-08 | 3 |
internal male genitalia | 1.85e-08 | 3 |
urothelium | 2.56e-08 | 5 |
tracheobronchial tree | 3.84e-08 | 15 |
lower respiratory tract | 3.84e-08 | 15 |
trachea | 7.33e-08 | 7 |
respiratory airway | 7.33e-08 | 7 |
small intestine | 8.43e-08 | 4 |
trunk region element | 9.11e-08 | 101 |
endo-epithelium | 3.32e-07 | 82 |
intestine | 6.00e-07 | 17 |
transitional epithelium | 6.67e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.67e-11 | 106 |
adenocarcinoma | 7.97e-10 | 25 |
cell type cancer | 8.63e-07 | 143 |