FFCP PHASE1:Hg19::chr19:46916779..46916800,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=83987 | |EntrezGene=83987 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25367 | |HGNC=25367 | ||
|TSSclassifier=strong | |||
|UniProt=F5GX02 | |UniProt=F5GX02 | ||
|association_with_transcript=25bp_to_ENST00000540252_5end | |association_with_transcript=25bp_to_ENST00000540252_5end | ||
|cluster_id=chr19:46916779..46916800,- | |||
|coexpression_cluster_id=C3805 | |||
|description=CAGE_peak_4_at_CCDC8_5end | |description=CAGE_peak_4_at_CCDC8_5end | ||
|id=chr19:46916779..46916800,- | |id=chr19:46916779..46916800,- | ||
|ontology_enrichment_celltype=CL:0000055!2.39e-14!180;CL:0000057!8.88e-09!75;CL:0000183!4.19e-07!59;CL:0000327!8.64e-07!14 | |ontology_enrichment_celltype=CL:0000055!2.39e-14!180;CL:0000057!8.88e-09!75;CL:0000183!4.19e-07!59;CL:0000327!8.64e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000188;4.49e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,7.07e-08,58;CL:0000056,7.07e-08,58;CL:0000355,7.07e-08,58;CL:0000188,5.12e-07,9;CL:0000327,7.61e-07,15;CL:0000187,8.01e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!9.10e-13!365;UBERON:0000481!1.06e-11!347;UBERON:0000119!9.47e-11!312;UBERON:0003103!1.91e-10!69;UBERON:0000483!6.09e-10!309;UBERON:0000468!2.65e-09!659;UBERON:0000486!3.63e-08!82;UBERON:0002100!2.05e-07!216;UBERON:0001008!2.77e-07!45;UBERON:0006554!4.97e-07!44;UBERON:0000020!5.41e-07!23;UBERON:0000914!6.50e-07!83;UBERON:0002329!6.50e-07!83;UBERON:0003077!6.50e-07!83;UBERON:0003059!6.50e-07!83;UBERON:0007282!6.50e-07!83;UBERON:0009618!6.50e-07!83;UBERON:0007285!6.50e-07!83;UBERON:0000970!8.35e-07!20;UBERON:0001134!8.90e-07!61;UBERON:0002036!8.90e-07!61;UBERON:0003082!8.90e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0006876;1.19e-08;11!UBERON:0000970;4.64e-08;20!UBERON:0001134;4.85e-08;16!UBERON:0002036;4.85e-08;16!UBERON:0000019;1.25e-07;19!UBERON:0000047;1.25e-07;19!UBERON:0004088;1.25e-07;19!UBERON:0010230;1.25e-07;19!UBERON:0000020;1.43e-07;23!UBERON:0002104;1.88e-07;21!UBERON:0001801;1.98e-07;14!UBERON:0001032;4.76e-07;24!UBERON:0004456;4.76e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,1.02e-08,83;UBERON:0006876,1.02e-08,11;UBERON:0003104,2.73e-08,160;UBERON:0009142,2.73e-08,160;UBERON:0001134,2.76e-08,62;UBERON:0002036,2.76e-08,62;UBERON:0003082,2.76e-08,62;UBERON:0002385,1.01e-07,64;UBERON:0001015,1.01e-07,64;UBERON:0000383,1.01e-07,64;UBERON:0003103,1.09e-07,68;UBERON:0007503,1.69e-07,78;UBERON:0000970,3.07e-07,21;UBERON:0002104,3.07e-07,21;UBERON:0002329,4.44e-07,71;UBERON:0003059,4.44e-07,71;UBERON:0007282,4.44e-07,71;UBERON:0004290,4.44e-07,71;UBERON:0009618,4.44e-07,71;UBERON:0001801,5.36e-07,14;UBERON:0002100,6.90e-07,199;UBERON:0000020,7.46e-07,24;UBERON:0001032,7.46e-07,24;UBERON:0004456,7.46e-07,24;UBERON:0003077,7.57e-07,72;UBERON:0007285,7.57e-07,72;UBERON:0000019,9.22e-07,20;UBERON:0000047,9.22e-07,20;UBERON:0010312,9.22e-07,20;UBERON:0004088,9.22e-07,20;UBERON:0010230,9.22e-07,20;UBERON:0003072,9.22e-07,20;UBERON:0004128,9.22e-07,20;UBERON:0003071,9.22e-07,20 | |||
|phase1_expression=1.81678379270557,1.92690471501885,1.55049844505568,0,1.78784437770915,1.74467704820074,5.06599756336621,1.26343974685366,0.261185628199839,2.94880723801811,4.88460817580699,0.873765488520689,1.31883489114227,1.23766352960047,1.32558950291166,0,0,0,0,1.96993692922861,2.44800829493104,0.940364164434263,1.43117993565528,0.821246550437305,0.502170558379211,0,0,0,0,0,0,0.919421224478927,1.204823675113,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,1.91793842765295,0.722878304769133,2.00535164254356,1.59331170856906,2.3858578411533,1.45990461090791,1.60709189178915,1.10864698731282,2.0202000709419,0.654895377488563,4.00724817121796,3.70784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,4.36094052142534,0,0.25326102332916,0.132409180813219,0.860509862246441,0.709336764396714,2.80338800071154,3.20246987189115,1.97334038733728,2.48968828319813,0.942974704487816,0.817309515567294,3.78393569112329,2.88087962239999,1.17160715916898,0.312160076830321,0,0.149448680551801,0.587172493218824,1.13311061057692,1.68540968042698,0.204154171254893,1.22834317311768,0.309977343527296,0,0.741800787835671,2.73048408581408,0.718618141816238,1.5150250255866,1.37630371859161,0,0,0,1.05166641234618,1.70148274740032,1.25572744982203,1.49490172172997,1.90738711043606,0,0,0.515281080091258,0.744467425326359,1.0126579934476,2.14361411354637,0.504867548488229,0.644349290496095,3.23292113637624,1.77504796258307,0.806016785821122,2.20428770003634,1.54608682530637,0.545492241181669,0.573609190778008,1.46368447355514,1.32529768321485,1.51052125730374,1.24393266018445,0.504641701751257,2.18986415445498,0,0.643240938192885,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,1.6462960453256,2.94017422771084,0,0,0,0,0,1.54411029268673,3.95101027471052,0,0,1.38882667737794,1.3032332212413,2.07986957055916,1.44331342025273,0.927443239800615,1.17408694235822,0,0,0,0,0,0,0,0,1.87467667973554,0.671928512795438,1.41775097242386,1.34337784054272,2.61570544662566,16.1020725249389,0,0,0,0,0,0.190493682876507,0.381988425558278,0,0,0.308482478109971,0,0,1.68196626518041,2.1798003441664,2.0534720029866,0.258543431515556,0,0,0.797814349754612,0,1.80045161983499,1.41849132023278,1.0656887160644,2.43062589218851,5.96883765930587,3.29296134712308,0,3.55391948742546,1.58390374586686,0,0,0.099972991182057,0,0,0,0.239624855491583,0,0,1.44781306667579,1.64381058040307,1.43248770591916,0,0,0,0,1.27047312111232,0,0,0.670065061337395,0,0,0,0,2.33113834266366,1.50051156317903,2.98391526069709,0.623912584592421,0.535286966391485,0.157702415033935,0.819989904948992,3.91229929646035,0,1.03473071292505,3.32112799267718,2.76553752812555,0.781952530212746,4.89502893656851,3.43143423810856,0,0,0,2.12189300012382,1.66435439510497,2.11673205330776,1.73675465473144,1.53461973288062,2.24528075546459,1.02511319404561,2.04682899626681,1.44768529029247,1.48418066444991,1.54209693802656,1.59805552781814,0.821271560138091,1.03850885836724,1.04589340613963,0,4.21063587636898,0.920809889358963,0.918515585316854,2.00300284807389,1.44236856455367,2.70719767744447,0.693138033939733,4.70609861506113,0,1.26661954671451,0,0.170093705276516,0.215915916102139,0,4.06419656315779,1.50506932156456,1.52925763827023,2.49322802678617,0.671624264166535,0,0,1.28225062558195,2.95213181129735,1.62689197332152,0.515205058238611,0,0,0.574265537996172,0.650060246036521,0,2.90012154876366,1.3864375540318,2.45605879561807,3.1702411671442,2.57808587683857,3.0453505721988,2.21589231281862,4.00644160410318,2.31398881505369,0.768760269460425,1.91419068741876,1.4162089319777,0.464845549297286,1.25924938732256,0.6970372701606,0.308033580176089,1.06461206063404,1.73986598415015,0,0,2.97726695487734,1.58189712359363,1.33441135746677,2.81487570442467,2.99557291623744,2.22742273548156,0,1.61885211824983,1.64722217841633,2.12062324222236,1.2130948894399,0,0,4.38870365180631,0.487426979262569,0,1.9109987597118,1.97967604735198,1.13008116620243,0.551365343546124,0,0.438450885253763,1.15755106853338,2.62357900818653,0.202910376962704,0,0.281695602532241,1.29070216983646,1.17898849215745,0,0.354761064070598,2.11107635297664,1.64647446479951,2.27683904259429,2.44954304171488,0.192444225451024,2.01090682660736,0,0.188287601553558,1.29151611801369,3.36942951335251,3.99087138183008,0.459446800413919,0,0,0,0,0,0,0,0,2.56377770705936,0.962479855263359,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556812347790485,0,1.89318974933188,0,0,0,0.293016358543788,0,0,0,0.47748896947538,0.593929361665277,0.614321404198464,0.994147647766298,0.281338832821026,0.222617410045812,0,0,0.796991953004279,0,1.51159648712566,0,0,0,0,0,0,0.197286811273867,0,0,0,0.371072392647405,0,0,0,0.724999575434793,0,0,0,0,0,0,0.885741385813839,0.361789315876224,1.52581736317083,0.110579259931225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|phase1_expression=1.81678379270557,1.92690471501885,1.55049844505568,0,1.78784437770915,1.74467704820074,5.06599756336621,1.26343974685366,0.261185628199839,2.94880723801811,4.88460817580699,0.873765488520689,1.31883489114227,1.23766352960047,1.32558950291166,0,0,0,0,1.96993692922861,2.44800829493104,0.940364164434263,1.43117993565528,0.821246550437305,0.502170558379211,0,0,0,0,0,0,0.919421224478927,1.204823675113,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,1.91793842765295,0.722878304769133,2.00535164254356,1.59331170856906,2.3858578411533,1.45990461090791,1.60709189178915,1.10864698731282,2.0202000709419,0.654895377488563,4.00724817121796,3.70784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,4.36094052142534,0,0.25326102332916,0.132409180813219,0.860509862246441,0.709336764396714,2.80338800071154,3.20246987189115,1.97334038733728,2.48968828319813,0.942974704487816,0.817309515567294,3.78393569112329,2.88087962239999,1.17160715916898,0.312160076830321,0,0.149448680551801,0.587172493218824,1.13311061057692,1.68540968042698,0.204154171254893,1.22834317311768,0.309977343527296,0,0.741800787835671,2.73048408581408,0.718618141816238,1.5150250255866,1.37630371859161,0,0,0,1.05166641234618,1.70148274740032,1.25572744982203,1.49490172172997,1.90738711043606,0,0,0.515281080091258,0.744467425326359,1.0126579934476,2.14361411354637,0.504867548488229,0.644349290496095,3.23292113637624,1.77504796258307,0.806016785821122,2.20428770003634,1.54608682530637,0.545492241181669,0.573609190778008,1.46368447355514,1.32529768321485,1.51052125730374,1.24393266018445,0.504641701751257,2.18986415445498,0,0.643240938192885,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,1.6462960453256,2.94017422771084,0,0,0,0,0,1.54411029268673,3.95101027471052,0,0,1.38882667737794,1.3032332212413,2.07986957055916,1.44331342025273,0.927443239800615,1.17408694235822,0,0,0,0,0,0,0,0,1.87467667973554,0.671928512795438,1.41775097242386,1.34337784054272,2.61570544662566,16.1020725249389,0,0,0,0,0,0.190493682876507,0.381988425558278,0,0,0.308482478109971,0,0,1.68196626518041,2.1798003441664,2.0534720029866,0.258543431515556,0,0,0.797814349754612,0,1.80045161983499,1.41849132023278,1.0656887160644,2.43062589218851,5.96883765930587,3.29296134712308,0,3.55391948742546,1.58390374586686,0,0,0.099972991182057,0,0,0,0.239624855491583,0,0,1.44781306667579,1.64381058040307,1.43248770591916,0,0,0,0,1.27047312111232,0,0,0.670065061337395,0,0,0,0,2.33113834266366,1.50051156317903,2.98391526069709,0.623912584592421,0.535286966391485,0.157702415033935,0.819989904948992,3.91229929646035,0,1.03473071292505,3.32112799267718,2.76553752812555,0.781952530212746,4.89502893656851,3.43143423810856,0,0,0,2.12189300012382,1.66435439510497,2.11673205330776,1.73675465473144,1.53461973288062,2.24528075546459,1.02511319404561,2.04682899626681,1.44768529029247,1.48418066444991,1.54209693802656,1.59805552781814,0.821271560138091,1.03850885836724,1.04589340613963,0,4.21063587636898,0.920809889358963,0.918515585316854,2.00300284807389,1.44236856455367,2.70719767744447,0.693138033939733,4.70609861506113,0,1.26661954671451,0,0.170093705276516,0.215915916102139,0,4.06419656315779,1.50506932156456,1.52925763827023,2.49322802678617,0.671624264166535,0,0,1.28225062558195,2.95213181129735,1.62689197332152,0.515205058238611,0,0,0.574265537996172,0.650060246036521,0,2.90012154876366,1.3864375540318,2.45605879561807,3.1702411671442,2.57808587683857,3.0453505721988,2.21589231281862,4.00644160410318,2.31398881505369,0.768760269460425,1.91419068741876,1.4162089319777,0.464845549297286,1.25924938732256,0.6970372701606,0.308033580176089,1.06461206063404,1.73986598415015,0,0,2.97726695487734,1.58189712359363,1.33441135746677,2.81487570442467,2.99557291623744,2.22742273548156,0,1.61885211824983,1.64722217841633,2.12062324222236,1.2130948894399,0,0,4.38870365180631,0.487426979262569,0,1.9109987597118,1.97967604735198,1.13008116620243,0.551365343546124,0,0.438450885253763,1.15755106853338,2.62357900818653,0.202910376962704,0,0.281695602532241,1.29070216983646,1.17898849215745,0,0.354761064070598,2.11107635297664,1.64647446479951,2.27683904259429,2.44954304171488,0.192444225451024,2.01090682660736,0,0.188287601553558,1.29151611801369,3.36942951335251,3.99087138183008,0.459446800413919,0,0,0,0,0,0,0,0,2.56377770705936,0.962479855263359,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556812347790485,0,1.89318974933188,0,0,0,0.293016358543788,0,0,0,0.47748896947538,0.593929361665277,0.614321404198464,0.994147647766298,0.281338832821026,0.222617410045812,0,0,0.796991953004279,0,1.51159648712566,0,0,0,0,0,0,0.197286811273867,0,0,0,0.371072392647405,0,0,0,0.724999575434793,0,0,0,0,0,0,0.885741385813839,0.361789315876224,1.52581736317083,0.110579259931225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| ||
|short_description=p4@CCDC8 | |short_description=p4@CCDC8 | ||
}} | }} |
Latest revision as of 20:35, 18 September 2015
Short description: | p4@CCDC8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CCDC8_5end |
Coexpression cluster: | C3805_Mammary_skeletal_Mesenchymal_Osteoblast_Corneal_Pericytes_Fibroblast |
Association with transcript: | 25bp_to_ENST00000540252_5end |
EntrezGene: | CCDC8 |
HGNC: | 25367 |
UniProt: | F5GX02 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 7.07e-08 | 58 |
myoblast | 7.07e-08 | 58 |
multi-potent skeletal muscle stem cell | 7.07e-08 | 58 |
cell of skeletal muscle | 5.12e-07 | 9 |
extracellular matrix secreting cell | 7.61e-07 | 15 |
muscle cell | 8.01e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 1.02e-08 | 83 |
vasculature of organ | 1.02e-08 | 11 |
mesenchyme | 2.73e-08 | 160 |
entire embryonic mesenchyme | 2.73e-08 | 160 |
skeletal muscle tissue | 2.76e-08 | 62 |
striated muscle tissue | 2.76e-08 | 62 |
myotome | 2.76e-08 | 62 |
muscle tissue | 1.01e-07 | 64 |
musculature | 1.01e-07 | 64 |
musculature of body | 1.01e-07 | 64 |
compound organ | 1.09e-07 | 68 |
epithelial vesicle | 1.69e-07 | 78 |
eye | 3.07e-07 | 21 |
visual system | 3.07e-07 | 21 |
somite | 4.44e-07 | 71 |
presomitic mesoderm | 4.44e-07 | 71 |
presumptive segmental plate | 4.44e-07 | 71 |
dermomyotome | 4.44e-07 | 71 |
trunk paraxial mesoderm | 4.44e-07 | 71 |
anterior segment of eyeball | 5.36e-07 | 14 |
trunk | 6.90e-07 | 199 |
sense organ | 7.46e-07 | 24 |
sensory system | 7.46e-07 | 24 |
entire sense organ system | 7.46e-07 | 24 |
paraxial mesoderm | 7.57e-07 | 72 |
presumptive paraxial mesoderm | 7.57e-07 | 72 |
camera-type eye | 9.22e-07 | 20 |
simple eye | 9.22e-07 | 20 |
immature eye | 9.22e-07 | 20 |
ocular region | 9.22e-07 | 20 |
eyeball of camera-type eye | 9.22e-07 | 20 |
optic cup | 9.22e-07 | 20 |
optic vesicle | 9.22e-07 | 20 |
eye primordium | 9.22e-07 | 20 |