FFCP PHASE1:Hg19::chr12:78334017..78334054,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=89795 | |EntrezGene=89795 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15998 | |HGNC=15998 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000549369_5end | |association_with_transcript=0bp_to_ENST00000549369_5end | ||
|cluster_id=chr12:78334017..78334054,+ | |||
|coexpression_cluster_id=C1687 | |||
|description=CAGE_peak_2_at_NAV3_5end | |description=CAGE_peak_2_at_NAV3_5end | ||
|id=chr12:78334017..78334054,+ | |id=chr12:78334017..78334054,+ | ||
|ontology_enrichment_celltype=CL:0000055!5.48e-38!180;CL:0000222!1.53e-27!119;CL:0000057!2.87e-26!75;CL:0000548!2.59e-19!679;CL:0000004!2.59e-19!679;CL:0000255!2.59e-19!679;CL:0000220!4.12e-19!246;CL:0000012!1.27e-18!682;CL:0002321!1.72e-18!248;CL:0000680!1.01e-17!57;CL:0000056!1.01e-17!57;CL:0000355!1.01e-17!57;CL:0000187!3.96e-16!54;CL:0000183!1.19e-15!59;CL:0000144!1.29e-14!625;CL:0000393!1.77e-13!60;CL:0000211!1.77e-13!60;CL:0000192!2.04e-13!42;CL:0000514!2.04e-13!42;CL:0002371!9.98e-13!591;CL:0002620!6.05e-12!23;CL:0000359!2.96e-11!32;CL:0000003!2.29e-10!722;CL:0000213!2.96e-09!57;CL:0000215!2.96e-09!57;CL:0000076!8.68e-09!62;CL:0002334!7.43e-08!12;CL:0000077!7.54e-08!19 | |ontology_enrichment_celltype=CL:0000055!5.48e-38!180;CL:0000222!1.53e-27!119;CL:0000057!2.87e-26!75;CL:0000548!2.59e-19!679;CL:0000004!2.59e-19!679;CL:0000255!2.59e-19!679;CL:0000220!4.12e-19!246;CL:0000012!1.27e-18!682;CL:0002321!1.72e-18!248;CL:0000680!1.01e-17!57;CL:0000056!1.01e-17!57;CL:0000355!1.01e-17!57;CL:0000187!3.96e-16!54;CL:0000183!1.19e-15!59;CL:0000144!1.29e-14!625;CL:0000393!1.77e-13!60;CL:0000211!1.77e-13!60;CL:0000192!2.04e-13!42;CL:0000514!2.04e-13!42;CL:0002371!9.98e-13!591;CL:0002620!6.05e-12!23;CL:0000359!2.96e-11!32;CL:0000003!2.29e-10!722;CL:0000213!2.96e-09!57;CL:0000215!2.96e-09!57;CL:0000076!8.68e-09!62;CL:0002334!7.43e-08!12;CL:0000077!7.54e-08!19 | ||
|ontology_enrichment_celltype_v019=CL:0002620;3.61e-14;23!CL:0000359;9.42e-13;32!CL:0000057;1.37e-12;73!CL:0000192;1.72e-09;43!CL:0002334;3.65e-09;12!CL:0000187;3.97e-09;55!CL:0000134;1.92e-08;55!CL:0000077;2.26e-08;19!CL:0002320;6.39e-08;188!CL:0000048;1.45e-07;58!CL:0000723;2.10e-07;61!CL:0000393;2.45e-07;61!CL:0000211;2.45e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.38e-30,76;CL:0000222,9.34e-27,121;CL:0000680,2.22e-18,58;CL:0000056,2.22e-18,58;CL:0000355,2.22e-18,58;CL:0000187,1.55e-16,55;CL:0002620,3.91e-14,23;CL:0000393,6.10e-14,61;CL:0000211,6.10e-14,61;CL:0000723,1.26e-13,433;CL:0000359,1.74e-13,32;CL:0000048,2.25e-13,427;CL:0002321,2.79e-13,250;CL:0000192,4.56e-13,43;CL:0000514,4.56e-13,43;CL:0000034,2.03e-12,441;CL:0002334,3.47e-09,12;CL:0000077,1.87e-08,19;CL:0000213,2.01e-08,58;CL:0000215,2.01e-08,58;CL:0000076,1.33e-07,63 | |||
|ontology_enrichment_development_v019=CL:0000514;1.72e-09;43!CL:0000355;2.31e-09;58 | |||
|ontology_enrichment_disease=DOID:2394!6.61e-09!14 | |ontology_enrichment_disease=DOID:2394!6.61e-09!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;1.12e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.06e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!4.13e-21!83;UBERON:0002329!4.13e-21!83;UBERON:0003077!4.13e-21!83;UBERON:0003059!4.13e-21!83;UBERON:0007282!4.13e-21!83;UBERON:0009618!4.13e-21!83;UBERON:0007285!4.13e-21!83;UBERON:0004290!1.16e-19!70;UBERON:0000486!1.23e-19!82;UBERON:0005256!1.15e-18!143;UBERON:0002100!1.28e-17!216;UBERON:0002049!1.38e-16!79;UBERON:0007798!1.38e-16!79;UBERON:0001134!3.61e-16!61;UBERON:0002036!3.61e-16!61;UBERON:0003082!3.61e-16!61;UBERON:0000490!1.02e-15!138;UBERON:0000055!1.47e-15!69;UBERON:0002385!2.15e-15!63;UBERON:0001015!2.15e-15!63;UBERON:0000383!2.15e-15!63;UBERON:0004872!2.74e-15!84;UBERON:0001981!6.98e-15!60;UBERON:0007500!6.98e-15!60;UBERON:0004537!6.98e-15!60;UBERON:0006965!6.98e-15!60;UBERON:0003914!2.37e-14!118;UBERON:0001637!5.74e-13!42;UBERON:0003509!5.74e-13!42;UBERON:0004572!5.74e-13!42;UBERON:0004535!4.31e-12!110;UBERON:0003104!1.01e-11!238;UBERON:0009142!1.01e-11!238;UBERON:0002097!1.02e-11!40;UBERON:0000475!1.37e-11!365;UBERON:0002199!1.82e-11!45;UBERON:0002416!1.82e-11!45;UBERON:0003102!3.95e-11!95;UBERON:0001009!4.98e-11!113;UBERON:0004573!8.53e-11!33;UBERON:0004571!8.53e-11!33;UBERON:0000119!1.10e-09!312;UBERON:0000483!4.43e-09!309;UBERON:0000947!1.25e-07!21;UBERON:0010191!1.25e-07!21;UBERON:0000926!5.51e-07!448;UBERON:0004120!5.51e-07!448;UBERON:0006603!5.51e-07!448;UBERON:0000467!8.04e-07!625 | |ontology_enrichment_uberon=UBERON:0000914!4.13e-21!83;UBERON:0002329!4.13e-21!83;UBERON:0003077!4.13e-21!83;UBERON:0003059!4.13e-21!83;UBERON:0007282!4.13e-21!83;UBERON:0009618!4.13e-21!83;UBERON:0007285!4.13e-21!83;UBERON:0004290!1.16e-19!70;UBERON:0000486!1.23e-19!82;UBERON:0005256!1.15e-18!143;UBERON:0002100!1.28e-17!216;UBERON:0002049!1.38e-16!79;UBERON:0007798!1.38e-16!79;UBERON:0001134!3.61e-16!61;UBERON:0002036!3.61e-16!61;UBERON:0003082!3.61e-16!61;UBERON:0000490!1.02e-15!138;UBERON:0000055!1.47e-15!69;UBERON:0002385!2.15e-15!63;UBERON:0001015!2.15e-15!63;UBERON:0000383!2.15e-15!63;UBERON:0004872!2.74e-15!84;UBERON:0001981!6.98e-15!60;UBERON:0007500!6.98e-15!60;UBERON:0004537!6.98e-15!60;UBERON:0006965!6.98e-15!60;UBERON:0003914!2.37e-14!118;UBERON:0001637!5.74e-13!42;UBERON:0003509!5.74e-13!42;UBERON:0004572!5.74e-13!42;UBERON:0004535!4.31e-12!110;UBERON:0003104!1.01e-11!238;UBERON:0009142!1.01e-11!238;UBERON:0002097!1.02e-11!40;UBERON:0000475!1.37e-11!365;UBERON:0002199!1.82e-11!45;UBERON:0002416!1.82e-11!45;UBERON:0003102!3.95e-11!95;UBERON:0001009!4.98e-11!113;UBERON:0004573!8.53e-11!33;UBERON:0004571!8.53e-11!33;UBERON:0000119!1.10e-09!312;UBERON:0000483!4.43e-09!309;UBERON:0000947!1.25e-07!21;UBERON:0010191!1.25e-07!21;UBERON:0000926!5.51e-07!448;UBERON:0004120!5.51e-07!448;UBERON:0006603!5.51e-07!448;UBERON:0000467!8.04e-07!625 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;6.23e-12;33!UBERON:0004571;6.23e-12;33!UBERON:0001637;4.44e-11;42!UBERON:0003509;4.44e-11;42!UBERON:0004572;4.44e-11;42!UBERON:0002097;1.67e-10;41!UBERON:0002199;3.03e-09;46!UBERON:0002416;3.03e-09;46!UBERON:0007500;3.58e-09;56!UBERON:0001981;3.58e-09;56!UBERON:0004537;3.58e-09;56!UBERON:0002385;3.96e-09;31!UBERON:0001015;3.96e-09;31!UBERON:0000383;3.96e-09;31!UBERON:0000947;1.44e-08;21!UBERON:0010191;1.44e-08;21!UBERON:0000055;3.46e-08;65!UBERON:0002384;4.68e-07;198!UBERON:0003102;8.96e-07;50 | |||
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| ||
|short_description=p2@NAV3 | |short_description=p2@NAV3 | ||
}} | }} |
Latest revision as of 22:37, 24 September 2015
Short description: | p2@NAV3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NAV3_5end |
Coexpression cluster: | C1687_liposarcoma_basal_Preadipocyte_Fibroblast_mesenchymal_Smooth_leiomyoma |
Association with transcript: | 0bp_to_ENST00000549369_5end |
EntrezGene: | NAV3 |
HGNC: | 15998 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.38e-30 | 76 |
mesodermal cell | 9.34e-27 | 121 |
muscle precursor cell | 2.22e-18 | 58 |
myoblast | 2.22e-18 | 58 |
multi-potent skeletal muscle stem cell | 2.22e-18 | 58 |
muscle cell | 1.55e-16 | 55 |
skin fibroblast | 3.91e-14 | 23 |
electrically responsive cell | 6.10e-14 | 61 |
electrically active cell | 6.10e-14 | 61 |
somatic stem cell | 1.26e-13 | 433 |
vascular associated smooth muscle cell | 1.74e-13 | 32 |
multi fate stem cell | 2.25e-13 | 427 |
embryonic cell | 2.79e-13 | 250 |
smooth muscle cell | 4.56e-13 | 43 |
smooth muscle myoblast | 4.56e-13 | 43 |
stem cell | 2.03e-12 | 441 |
preadipocyte | 3.47e-09 | 12 |
mesothelial cell | 1.87e-08 | 19 |
lining cell | 2.01e-08 | 58 |
barrier cell | 2.01e-08 | 58 |
squamous epithelial cell | 1.33e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.06e-10 | 14 |