FFCP PHASE1:Hg19::chr12:69004630..69004694,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5908 | |EntrezGene=5908 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9857 | |HGNC=9857 | ||
|TSSclassifier=strong | |||
|UniProt=P61224,F8WBC0,E7ESV4,B4DW74,F5H0S2,F5H500,F5H491,F5H6R7 | |UniProt=P61224,F8WBC0,E7ESV4,B4DW74,F5H0S2,F5H500,F5H491,F5H6R7 | ||
|association_with_transcript=0bp_to_ENST00000341355,ENST00000393436,ENST00000422358,ENST00000425247,ENST00000450214,ENST00000460800,ENST00000463493,ENST00000489473,ENST00000501412,ENST00000537460,ENST00000538283,ENST00000541167,ENST00000545270,uc001sub.2,uc001suc.2,uc010ste.1,uc010stf.1,uc010stg.1,uc010sth.1,uc010sti.1_5end | |association_with_transcript=0bp_to_ENST00000341355,ENST00000393436,ENST00000422358,ENST00000425247,ENST00000450214,ENST00000460800,ENST00000463493,ENST00000489473,ENST00000501412,ENST00000537460,ENST00000538283,ENST00000541167,ENST00000545270,uc001sub.2,uc001suc.2,uc010ste.1,uc010stf.1,uc010stg.1,uc010sth.1,uc010sti.1_5end | ||
|cluster_id=chr12:69004630..69004694,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_1_at_RAP1B_5end | |description=CAGE_peak_1_at_RAP1B_5end | ||
|id=chr12:69004630..69004694,+ | |id=chr12:69004630..69004694,+ | ||
|ontology_enrichment_celltype=CL:0000763!3.27e-34!112;CL:0000049!3.27e-34!112;CL:0000766!5.49e-31!76;CL:0000557!3.86e-29!71;CL:0000839!4.88e-28!70;CL:0002057!4.54e-27!42;CL:0002009!7.36e-27!65;CL:0000037!4.49e-26!172;CL:0000566!4.49e-26!172;CL:0002032!4.76e-26!165;CL:0000837!4.76e-26!165;CL:0002194!1.01e-25!63;CL:0000576!1.01e-25!63;CL:0000040!1.01e-25!63;CL:0000559!1.01e-25!63;CL:0000860!2.32e-23!45;CL:0000988!2.39e-23!182;CL:0000738!4.70e-23!140;CL:0002031!1.15e-19!124;CL:0000134!4.70e-18!358;CL:0000034!8.66e-18!444;CL:0002320!1.93e-17!365;CL:0000048!1.17e-16!430;CL:0002087!2.42e-16!119;CL:0000723!3.67e-16!436;CL:0000219!8.23e-16!390;CL:0000003!2.45e-09!722;CL:0000144!2.50e-08!625;CL:0002371!2.06e-07!591;CL:0000063!4.29e-07!578 | |ontology_enrichment_celltype=CL:0000763!3.27e-34!112;CL:0000049!3.27e-34!112;CL:0000766!5.49e-31!76;CL:0000557!3.86e-29!71;CL:0000839!4.88e-28!70;CL:0002057!4.54e-27!42;CL:0002009!7.36e-27!65;CL:0000037!4.49e-26!172;CL:0000566!4.49e-26!172;CL:0002032!4.76e-26!165;CL:0000837!4.76e-26!165;CL:0002194!1.01e-25!63;CL:0000576!1.01e-25!63;CL:0000040!1.01e-25!63;CL:0000559!1.01e-25!63;CL:0000860!2.32e-23!45;CL:0000988!2.39e-23!182;CL:0000738!4.70e-23!140;CL:0002031!1.15e-19!124;CL:0000134!4.70e-18!358;CL:0000034!8.66e-18!444;CL:0002320!1.93e-17!365;CL:0000048!1.17e-16!430;CL:0002087!2.42e-16!119;CL:0000723!3.67e-16!436;CL:0000219!8.23e-16!390;CL:0000003!2.45e-09!722;CL:0000144!2.50e-08!625;CL:0002371!2.06e-07!591;CL:0000063!4.29e-07!578 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.08e-20;33!CL:0002057;2.08e-20;33!CL:0000473;3.01e-19;39!CL:0000234;3.01e-19;39!CL:0000576;2.87e-16;48!CL:0000766;3.35e-15;69!CL:0000763;3.93e-10;100!CL:0000738;8.71e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,2.31e-36,108;CL:0000049,2.31e-36,108;CL:0000766,9.83e-34,72;CL:0000557,6.57e-32,67;CL:0000839,9.39e-31,66;CL:0002009,1.18e-29,61;CL:0000473,1.31e-29,48;CL:0000234,1.31e-29,48;CL:0002194,1.72e-28,59;CL:0000576,1.72e-28,59;CL:0000040,1.72e-28,59;CL:0000559,1.72e-28,59;CL:0002032,2.42e-27,161;CL:0000837,2.42e-27,161;CL:0000037,2.50e-27,168;CL:0000860,4.54e-27,42;CL:0002057,4.54e-27,42;CL:0000988,4.19e-25,177;CL:0000738,2.15e-24,136;CL:0002031,5.70e-21,120;CL:0000134,2.54e-19,354;CL:0000034,4.76e-19,441;CL:0002320,1.12e-18,361;CL:0000048,6.96e-18,427;CL:0002087,1.62e-17,115;CL:0000723,2.31e-17,433;CL:0000219,5.97e-17,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.12e-19;42!CL:0000049;1.18e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.21e-28!102;UBERON:0003061!3.21e-28!102;UBERON:0002193!5.67e-26!112;UBERON:0004765!2.57e-25!101;UBERON:0001434!2.57e-25!101;UBERON:0002371!3.60e-25!80;UBERON:0001474!1.03e-24!86;UBERON:0002384!2.06e-18!375;UBERON:0002204!2.42e-13!167;UBERON:0002405!2.80e-13!115 | |ontology_enrichment_uberon=UBERON:0002390!3.21e-28!102;UBERON:0003061!3.21e-28!102;UBERON:0002193!5.67e-26!112;UBERON:0004765!2.57e-25!101;UBERON:0001434!2.57e-25!101;UBERON:0002371!3.60e-25!80;UBERON:0001474!1.03e-24!86;UBERON:0002384!2.06e-18!375;UBERON:0002204!2.42e-13!167;UBERON:0002405!2.80e-13!115 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.20e-30,98;UBERON:0003061,3.20e-30,98;UBERON:0002193,1.03e-27,108;UBERON:0004765,1.06e-27,90;UBERON:0002371,2.12e-27,76;UBERON:0001434,4.71e-27,100;UBERON:0001474,8.72e-27,82;UBERON:0002405,1.73e-23,93;UBERON:0002384,1.13e-19,371;UBERON:0002204,2.58e-14,167 | |||
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|short_description=p1@RAP1B | |short_description=p1@RAP1B | ||
}} | }} |
Latest revision as of 03:28, 20 September 2015
Short description: | p1@RAP1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAP1B_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_ENST00000341355, ENST00000393436, ENST00000422358, ENST00000425247, ENST00000450214, ENST00000460800, ENST00000463493, ENST00000489473, ENST00000501412, ENST00000537460, ENST00000538283, ENST00000541167, ENST00000545270, uc001sub.2, uc001suc.2, uc010ste.1, uc010stf.1, uc010stg.1, uc010sth.1, uc010sti.1_5end |
EntrezGene: | RAP1B |
HGNC: | 9857 |
UniProt: | P61224F8WBC0E7ESV4B4DW74F5H0S2F5H500F5H491F5H6R7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 2.31e-36 | 108 |
common myeloid progenitor | 2.31e-36 | 108 |
myeloid leukocyte | 9.83e-34 | 72 |
granulocyte monocyte progenitor cell | 6.57e-32 | 67 |
myeloid lineage restricted progenitor cell | 9.39e-31 | 66 |
macrophage dendritic cell progenitor | 1.18e-29 | 61 |
defensive cell | 1.31e-29 | 48 |
phagocyte | 1.31e-29 | 48 |
monopoietic cell | 1.72e-28 | 59 |
monocyte | 1.72e-28 | 59 |
monoblast | 1.72e-28 | 59 |
promonocyte | 1.72e-28 | 59 |
hematopoietic oligopotent progenitor cell | 2.42e-27 | 161 |
hematopoietic multipotent progenitor cell | 2.42e-27 | 161 |
hematopoietic stem cell | 2.50e-27 | 168 |
classical monocyte | 4.54e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.54e-27 | 42 |
hematopoietic cell | 4.19e-25 | 177 |
leukocyte | 2.15e-24 | 136 |
hematopoietic lineage restricted progenitor cell | 5.70e-21 | 120 |
mesenchymal cell | 2.54e-19 | 354 |
stem cell | 4.76e-19 | 441 |
connective tissue cell | 1.12e-18 | 361 |
multi fate stem cell | 6.96e-18 | 427 |
nongranular leukocyte | 1.62e-17 | 115 |
somatic stem cell | 2.31e-17 | 433 |
motile cell | 5.97e-17 | 386 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.20e-30 | 98 |
blood island | 3.20e-30 | 98 |
hemolymphoid system | 1.03e-27 | 108 |
skeletal element | 1.06e-27 | 90 |
bone marrow | 2.12e-27 | 76 |
skeletal system | 4.71e-27 | 100 |
bone element | 8.72e-27 | 82 |
immune system | 1.73e-23 | 93 |
connective tissue | 1.13e-19 | 371 |
musculoskeletal system | 2.58e-14 | 167 |