FFCP PHASE1:Hg19::chr12:57351289..57351300,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8608 | |EntrezGene=8608 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=29674 | |HGNC=29674 | ||
|TSSclassifier=strong | |||
|UniProt=O75452 | |UniProt=O75452 | ||
|association_with_transcript=117bp_to_NM_003708,uc001smi.3,uc009zpa.2_5end | |association_with_transcript=117bp_to_NM_003708,uc001smi.3,uc009zpa.2_5end | ||
|cluster_id=chr12:57351289..57351300,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_2_at_RDH16_5end | |description=CAGE_peak_2_at_RDH16_5end | ||
|id=chr12:57351289..57351300,- | |id=chr12:57351289..57351300,- | ||
|ontology_enrichment_celltype=CL:0000223!6.05e-11!59;CL:0002076!3.98e-08!43;CL:0002251!3.23e-07!21;CL:0002563!4.76e-07!4 | |ontology_enrichment_celltype=CL:0000223!6.05e-11!59;CL:0002076!3.98e-08!43;CL:0002251!3.23e-07!21;CL:0002563!4.76e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000182;2.01e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.97e-08,12 | |||
|ontology_enrichment_development_v019=UBERON:0005754;5.13e-23;1!UBERON:0007297;3.24e-12;2 | |||
|ontology_enrichment_disease=DOID:1749!7.80e-11!14;DOID:3151!5.96e-08!1;DOID:3149!5.96e-08!1;DOID:5093!2.63e-07!4;DOID:1612!2.63e-07!4 | |ontology_enrichment_disease=DOID:1749!7.80e-11!14;DOID:3151!5.96e-08!1;DOID:3149!5.96e-08!1;DOID:5093!2.63e-07!4;DOID:1612!2.63e-07!4 | ||
|ontology_enrichment_disease_v019=DOID:3151;3.28e-23;1!DOID:3149;3.28e-23;1!DOID:3451;2.59e-12;2!DOID:4159;2.59e-12;2!DOID:0060122;2.59e-12;2!DOID:5093;9.63e-07;4!DOID:1612;9.63e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,3.28e-23,1;DOID:3149,3.28e-23,1;DOID:3451,2.59e-12,2;DOID:4159,2.59e-12,2;DOID:0060122,2.59e-12,2;DOID:5093,9.11e-07,4;DOID:1612,9.11e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0000344!1.32e-12!12;UBERON:0006947!2.53e-09!3;UBERON:0004054!2.53e-09!3;UBERON:0004119!2.98e-08!169;UBERON:0000925!2.98e-08!169;UBERON:0006595!2.98e-08!169;UBERON:0000998!6.80e-08!1;UBERON:0006868!6.80e-08!1;UBERON:0002372!2.17e-07!1;UBERON:0001961!2.17e-07!1;UBERON:0001744!2.17e-07!1;UBERON:0001735!2.17e-07!1;UBERON:0001301!2.47e-07!1;UBERON:0000997!3.17e-07!1;UBERON:0005056!3.17e-07!1;UBERON:0005904!3.38e-07!4;UBERON:0003343!4.47e-07!4;UBERON:0004785!4.47e-07!4;UBERON:0001242!4.76e-07!4;UBERON:0001262!4.76e-07!4;UBERON:0004786!4.76e-07!4;UBERON:0004808!4.76e-07!4;UBERON:0001277!4.76e-07!4;UBERON:0000485!9.08e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0000998;5.13e-23;1!UBERON:0006868;5.13e-23;1!UBERON:0006562;3.24e-12;2!UBERON:0002107;2.98e-11;19!UBERON:0006925;2.98e-11;19!UBERON:0002423;1.06e-08;25!UBERON:0006947;1.40e-08;3!UBERON:0004054;1.40e-08;3!UBERON:0002365;2.39e-07;31!UBERON:0002330;2.39e-07;31!UBERON:0000014;8.61e-07;4!UBERON:0005904;9.63e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000998,5.13e-23,1;UBERON:0006868,5.13e-23,1;UBERON:0002107,2.98e-11,19;UBERON:0006925,2.98e-11,19;UBERON:0008836,2.98e-11,19;UBERON:0008835,8.34e-10,22;UBERON:0003894,8.34e-10,22;UBERON:0009854,2.09e-09,23;UBERON:0007499,1.06e-08,25;UBERON:0009497,1.06e-08,25;UBERON:0000015,1.06e-08,25;UBERON:0002423,1.06e-08,25;UBERON:0006235,1.06e-08,25;UBERON:0004161,1.06e-08,25;UBERON:0006947,1.40e-08,3;UBERON:0004054,1.40e-08,3;UBERON:0009856,2.17e-08,26;UBERON:0002365,3.95e-07,31;UBERON:0002330,3.95e-07,31;UBERON:0005172,5.92e-07,54;UBERON:0005173,5.92e-07,54;UBERON:0000014,8.61e-07,4;UBERON:0005904,9.63e-07,4 | |||
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|short_description=p2@RDH16 | |short_description=p2@RDH16 | ||
}} | }} |
Latest revision as of 12:30, 19 September 2015
Short description: | p2@RDH16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RDH16_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 117bp_to_NM_003708, uc001smi.3, uc009zpa.2_5end |
EntrezGene: | RDH16 |
HGNC: | 29674 |
UniProt: | O75452 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.97e-08 | 12 |
Ontology term | p-value | n |
---|---|---|
seminal vesicle | 5.13e-23 | 1 |
seminal fluid secreting gland | 5.13e-23 | 1 |
liver | 2.98e-11 | 19 |
digestive gland | 2.98e-11 | 19 |
liver bud | 2.98e-11 | 19 |
hepatic diverticulum | 8.34e-10 | 22 |
liver primordium | 8.34e-10 | 22 |
digestive tract diverticulum | 2.09e-09 | 23 |
epithelial sac | 1.06e-08 | 25 |
epithelium of foregut-midgut junction | 1.06e-08 | 25 |
anatomical boundary | 1.06e-08 | 25 |
hepatobiliary system | 1.06e-08 | 25 |
foregut-midgut junction | 1.06e-08 | 25 |
septum transversum | 1.06e-08 | 25 |
male genital duct | 1.40e-08 | 3 |
internal male genitalia | 1.40e-08 | 3 |
sac | 2.17e-08 | 26 |
exocrine gland | 3.95e-07 | 31 |
exocrine system | 3.95e-07 | 31 |
abdomen element | 5.92e-07 | 54 |
abdominal segment element | 5.92e-07 | 54 |
zone of skin | 8.61e-07 | 4 |
duct of male reproductive system | 9.63e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 3.28e-23 | 1 |
keratoacanthoma | 3.28e-23 | 1 |
skin carcinoma | 2.59e-12 | 2 |
skin cancer | 2.59e-12 | 2 |
integumentary system cancer | 2.59e-12 | 2 |
thoracic cancer | 9.11e-07 | 4 |
breast cancer | 9.11e-07 | 4 |