FFCP PHASE1:Hg19::chr12:53205714..53205729,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3851 | |EntrezGene=3851 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=6441 | |HGNC=6441 | ||
|TSSclassifier=strong | |||
|UniProt=P19013 | |UniProt=P19013 | ||
|association_with_transcript=-77bp_to_BC003630_5end | |association_with_transcript=-77bp_to_BC003630_5end | ||
|cluster_id=chr12:53205714..53205729,- | |||
|coexpression_cluster_id=C60 | |||
|description=CAGE_peak_3_at_KRT4_5end | |description=CAGE_peak_3_at_KRT4_5end | ||
|id=chr12:53205714..53205729,- | |id=chr12:53205714..53205729,- | ||
|ontology_enrichment_celltype=CL:0002202!7.42e-07!9;CL:0002632!7.42e-07!9 | |ontology_enrichment_celltype=CL:0002202!7.42e-07!9;CL:0002632!7.42e-07!9 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009143;2.42e-50;1!UBERON:0008814;7.14e-26;2!UBERON:0010056;7.14e-26;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0006562!1.15e-19!11;UBERON:0001723!7.26e-19!3;UBERON:0001033!7.26e-19!3;UBERON:0010056!7.26e-19!3;UBERON:0002372!7.13e-15!1;UBERON:0001961!7.13e-15!1;UBERON:0001744!7.13e-15!1;UBERON:0001735!7.13e-15!1;UBERON:0006834!1.84e-14!1;UBERON:0001042!1.00e-12!10;UBERON:0009145!1.00e-12!10;UBERON:0000078!3.23e-12!18;UBERON:0000166!1.65e-10!21;UBERON:0000072!3.76e-10!46;UBERON:0000002!1.21e-09!6;UBERON:0001560!1.21e-09!6;UBERON:0007196!4.07e-09!14;UBERON:0001558!4.07e-09!14;UBERON:0000065!9.12e-09!53;UBERON:0001004!1.56e-08!72;UBERON:0003126!1.85e-08!7;UBERON:0001005!1.85e-08!7;UBERON:0000341!3.56e-08!2;UBERON:0001041!5.82e-08!98;UBERON:0000165!6.18e-08!28;UBERON:0000930!6.18e-08!28;UBERON:0003127!7.52e-08!2;UBERON:0004921!2.49e-07!129;UBERON:0004185!2.49e-07!129;UBERON:0001557!5.99e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0002372;6.58e-50;1!UBERON:0001961;6.58e-50;1!UBERON:0001744;6.58e-50;1!UBERON:0001042;6.58e-50;1!UBERON:0001735;6.58e-50;1!UBERON:0000341;4.32e-26;2!UBERON:0006562;9.18e-26;2!UBERON:0001043;8.00e-18;3!UBERON:0001723;9.46e-18;3!UBERON:0001033;9.46e-18;3!UBERON:0000974;1.22e-09;6!UBERON:0000165;4.21e-08;28 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002372,6.58e-50,1;UBERON:0001961,6.58e-50,1;UBERON:0001744,6.58e-50,1;UBERON:0001735,6.58e-50,1;UBERON:0000341,4.32e-26,2;UBERON:0001042,1.04e-20,10;UBERON:0009145,1.04e-20,10;UBERON:0006562,6.17e-19,11;UBERON:0001043,8.00e-18,3;UBERON:0009143,8.00e-18,3;UBERON:0001723,9.46e-18,3;UBERON:0001033,9.46e-18,3;UBERON:0010056,9.46e-18,3;UBERON:0001557,1.91e-11,19;UBERON:0000166,4.96e-10,22;UBERON:0000153,4.50e-08,62;UBERON:0007811,4.50e-08,62;UBERON:0000165,7.40e-08,29;UBERON:0000930,7.40e-08,29;UBERON:0007023,8.86e-08,114 | |||
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|short_description=p3@KRT4 | |short_description=p3@KRT4 | ||
}} | }} |
Latest revision as of 00:51, 19 September 2015
Short description: | p3@KRT4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_KRT4_5end |
Coexpression cluster: | C60_esophagus_tonsil_throat_tongue_uterus_cervix_cervical |
Association with transcript: | -77bp_to_BC003630_5end |
EntrezGene: | KRT4 |
HGNC: | 6441 |
UniProt: | P19013 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
tonsil | 6.58e-50 | 1 |
mucosa-associated lymphoid tissue | 6.58e-50 | 1 |
lymphoid tissue | 6.58e-50 | 1 |
tonsillar ring | 6.58e-50 | 1 |
throat | 4.32e-26 | 2 |
chordate pharynx | 1.04e-20 | 10 |
pharyngeal region of foregut | 1.04e-20 | 10 |
pharynx | 6.17e-19 | 11 |
esophagus | 8.00e-18 | 3 |
esophageal region | 8.00e-18 | 3 |
tongue | 9.46e-18 | 3 |
gustatory system | 9.46e-18 | 3 |
future tongue | 9.46e-18 | 3 |
upper respiratory tract | 1.91e-11 | 19 |
oral opening | 4.96e-10 | 22 |
anterior region of body | 4.50e-08 | 62 |
craniocervical region | 4.50e-08 | 62 |
mouth | 7.40e-08 | 29 |
stomodeum | 7.40e-08 | 29 |
adult organism | 8.86e-08 | 114 |