FFCP PHASE1:Hg19::chr12:52628993..52629014,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:52628993..52629014,+ | |||
|coexpression_cluster_id=C689 | |||
|description=CAGE_peak_at_chr12:52628993..52629014,+ | |description=CAGE_peak_at_chr12:52628993..52629014,+ | ||
|id=chr12:52628993..52629014,+ | |id=chr12:52628993..52629014,+ | ||
|ontology_enrichment_celltype=CL:0000066!8.41e-48!254;CL:0000076!6.19e-14!62;CL:0000077!6.51e-13!19;CL:0000063!3.45e-12!578;CL:0000213!6.74e-12!57;CL:0000215!6.74e-12!57;CL:0002076!6.15e-11!43;CL:0002368!1.36e-10!13;CL:1000413!1.63e-07!9;CL:0002202!1.90e-07!9;CL:0002632!1.90e-07!9;CL:1000449!9.01e-07!16;CL:0000223!9.02e-07!59 | |ontology_enrichment_celltype=CL:0000066!8.41e-48!254;CL:0000076!6.19e-14!62;CL:0000077!6.51e-13!19;CL:0000063!3.45e-12!578;CL:0000213!6.74e-12!57;CL:0000215!6.74e-12!57;CL:0002076!6.15e-11!43;CL:0002368!1.36e-10!13;CL:1000413!1.63e-07!9;CL:0002202!1.90e-07!9;CL:0002632!1.90e-07!9;CL:1000449!9.01e-07!16;CL:0000223!9.02e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000077;1.16e-15;19!CL:0002368;6.00e-13;13!CL:0002202;5.44e-10;9!CL:0002632;5.44e-10;9!CL:1000413;2.79e-08;9!CL:0002076;2.51e-07;42!CL:0000076;2.67e-07;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.34e-43,253;CL:0000077,8.33e-16,19;CL:0000076,1.42e-13,63;CL:0002368,5.74e-13,13;CL:0000213,1.05e-11,58;CL:0000215,1.05e-11,58;CL:0002076,6.43e-11,42;CL:0002202,5.66e-10,9;CL:0002632,5.66e-10,9;CL:1000413,4.88e-08,9;CL:0000223,2.85e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.95e-11;29 | |||
|ontology_enrichment_disease=DOID:305!1.50e-11!106;DOID:0050687!7.56e-07!143 | |ontology_enrichment_disease=DOID:305!1.50e-11!106;DOID:0050687!7.56e-07!143 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.87e-11,106;DOID:0050687,1.42e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!9.49e-15!169;UBERON:0000925!9.49e-15!169;UBERON:0006595!9.49e-15!169;UBERON:0008947!3.27e-14!38;UBERON:0003258!3.27e-14!38;UBERON:0000065!4.65e-14!53;UBERON:0000464!7.30e-14!104;UBERON:0000077!4.22e-13!130;UBERON:0001004!2.32e-12!72;UBERON:0000466!1.77e-11!126;UBERON:0000072!3.65e-11!46;UBERON:0001048!5.31e-11!168;UBERON:0001041!2.50e-10!98;UBERON:0001737!5.44e-10!9;UBERON:0001007!9.50e-10!155;UBERON:0001555!9.50e-10!155;UBERON:0007026!9.50e-10!155;UBERON:0003064!2.09e-09!37;UBERON:0000058!6.01e-09!26;UBERON:0004921!8.62e-09!129;UBERON:0004185!8.62e-09!129;UBERON:0005631!9.46e-09!14;UBERON:0000158!9.46e-09!14;UBERON:0002553!1.55e-08!70;UBERON:0005153!1.67e-08!37;UBERON:0006554!2.09e-08!44;UBERON:0001008!4.83e-08!45;UBERON:0005911!8.97e-08!82;UBERON:0000080!9.91e-08!18;UBERON:0002120!9.91e-08!18;UBERON:0004875!9.91e-08!18;UBERON:0005721!9.91e-08!18;UBERON:0005754!9.91e-08!18;UBERON:0007297!9.91e-08!18;UBERON:0000063!1.40e-07!97;UBERON:0004876!1.58e-07!20;UBERON:0003915!1.63e-07!9;UBERON:0004700!1.63e-07!9;UBERON:0001917!1.63e-07!9;UBERON:0003124!2.33e-07!7;UBERON:0009569!2.79e-07!113;UBERON:0003886!3.15e-07!63;UBERON:0006555!4.56e-07!17;UBERON:0005103!4.56e-07!17;UBERON:0000083!4.56e-07!17;UBERON:0009201!4.56e-07!17;UBERON:0004819!4.56e-07!17;UBERON:0006553!4.56e-07!17;UBERON:0003074!4.56e-07!17;UBERON:0003060!4.56e-07!17;UBERON:0000064!7.91e-07!219;UBERON:0004211!9.01e-07!16;UBERON:0001285!9.01e-07!16;UBERON:0007684!9.01e-07!16;UBERON:0003220!9.01e-07!16;UBERON:0004208!9.01e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.16e-15;9!UBERON:0001557;1.16e-15;9!UBERON:0000065;2.64e-14;44!UBERON:0000072;1.50e-13;37!UBERON:0003915;2.79e-08;9!UBERON:0004700;2.79e-08;9!UBERON:0001917;2.79e-08;9!UBERON:0000490;6.14e-08;33!UBERON:0001004;1.29e-07;65!UBERON:0007196;8.18e-07;15!UBERON:0001558;8.18e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0008947,2.68e-17,38;UBERON:0003258,2.68e-17,38;UBERON:0001737,8.51e-16,9;UBERON:0000065,1.42e-15,54;UBERON:0000072,4.75e-13,47;UBERON:0001004,3.18e-12,74;UBERON:0001048,1.01e-11,160;UBERON:0003124,2.32e-11,7;UBERON:0004119,6.10e-11,160;UBERON:0000925,6.10e-11,160;UBERON:0006595,6.10e-11,160;UBERON:0001041,7.31e-11,87;UBERON:0005631,1.68e-10,14;UBERON:0000158,1.68e-10,14;UBERON:0005153,3.65e-08,37;UBERON:0001557,4.81e-08,19;UBERON:0003915,4.88e-08,9;UBERON:0004700,4.88e-08,9;UBERON:0001917,4.88e-08,9;UBERON:0004921,8.74e-08,118;UBERON:0001007,1.33e-07,145;UBERON:0001555,1.33e-07,145;UBERON:0007026,1.33e-07,145;UBERON:0007196,7.17e-07,15;UBERON:0001558,7.17e-07,15;UBERON:0005178,7.80e-07,34;UBERON:0002224,7.80e-07,34 | |||
|phase1_expression=0.181678379270557,0,0,0,0.446961094427288,1.74467704820074,0,0,0,8.10921990454979,83.0383389887189,5.02415155899396,6.59417445571134,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0.376627918784408,0,0,0,0,0,0,10.1136334692682,6.024118375565,5.54631015250181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75208386025565,0,0,0.0945348171640679,3.99112915432615,2.28370442802128,0.0654895377488563,0,0.741568885568859,0,0,0,0,0,0,0.198762407366705,2.58070378531837,1.04142150482278,1.13061588384802,2.51699661725944,6.87795104850169,1.04497483268405,0.258416759169329,0,0,0.402829317109147,0.760272105718513,0,0.367663080345869,12.9622711661082,0,0.22452937262617,0,0,0,1.28241220751285,0,0,1.74437620857014,0,0.12663051166458,0,0,0.354668382198357,3.92474320099615,1.06748995729705,2.96001058100592,0,0.134710672069688,0.326923806226917,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0,0.340296549480063,0.358779271377724,0,0,0,0,0.772921620136887,0.18611685633159,0.675105328965065,0.876933046450788,0.757301322732344,0,0.161646056818812,0,0,0.169560592310488,3.28543450377605,0,0.573609190778008,0,0,0.116193942869518,0,0,0,0,1.28648187638577,0,0,0,5.44211280183282,7.41772636343647,5.06123162755312,7.72057809126758,5.22910665821775,3.79632990577755,3.50561401216427,2.94332197688019,4.23221872641029,0,0,0.8231480226628,0,0,0,0,0,0,0.686271241194102,1.53650399572076,0,0,0.185176890317059,0,0,7.21656710126366,0,0.352226082707465,0,0.462985512576611,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,1.25381931783988,2.90633938513962,6.9008882249738,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532844358032199,0,0,0,0,0,0,1.80863626235752,0.871533458600294,12.296677915393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.32753378449291,1.78428988797162,0.946214490203608,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,2.42502057157008,1.66435439510497,3.62868351995616,0.248107807818777,0,2.24528075546459,0.256278298511402,0.511707249066704,0.321707842287215,1.48418066444991,0,0.177561725313127,0,0,0,0,14.8374788024431,2.85451065701279,0.114814448164607,0.182091168006717,0,0.902399225814824,1.15523005656622,0,1.46139224653261,0.422206515571503,1.13733384070897,0.340187410553031,0.215915916102139,1.54227252690289,0,0.501689773854853,1.27438136522519,4.98645605357235,0.671624264166535,0,0,0,9.84043937099117,4.22991913063594,0.721287081534056,0,0,0,5.85054221432869,0,0,0,0,0,0,0,0,0,2.64455864577565,9.60950336825531,0.893288987462089,2.73126008309985,0,0,0,0,0.532306030317022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0.551365343546124,0,0,0,0,0,0.92947049429925,0,0,0,0,0,0,0,0,0,0.288666338176536,7.37332503089366,17.4225575778116,0.470719003883896,0.86101074534246,10.1082885400575,0.443430153536676,0.689170200620878,0,0,0,0,0,0,0,0,0,0,2.45040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,1.43246690842614,0.593929361665277,0.921482106297696,0,0,0,0,0.844501632511974,0.19924798825107,0,0,0,0,0,4.673154259661,2.68531762013414,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,2.54253650292766,2.12748913591143,0,0,0,0,0,0,0,0,0,0.653630781113941,0,0.0769502585037971,0.113942055847001,0,0.448788222048861,0.108647371922008,7.65602783356607,2.1983422416447,19.1892519366708,0,0,0,0,0,0,0,0,0,0.979396848954886,0,0,0,0,0,0,0,0,0,0,0,0,1.17398771359254,0,0,0,0,0,0,0,2.65861549082874,2.31694369112849,0.627865836814451,0,0.853828638089378,0,3.47119476670262,0,1.39294730528644,0.17472666824203,0,3.28971526382889,1.5348756588099,1.56019368401098,0,0,0.451961481561065,0,0,0,3.32437350649165,0.480952921509202,0.640358984218058,9.99048047910651,0.288180834308212,0,0,0.720273989940749,0,6.59943296927027,0,0,0,0,0,0,0,1.71906176567983,0,0,0,0,1.59743200399193,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236417121897595,0,0.211200673038813,0,1.34340638123612,0,0,0,0,0,0,2.39460383124975,0,0,0,0,0,0,0,1.71086837884329,0,1.17466153824464,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0.155262956876259,0,0,0.521745061811734,0,0.761610424337591,2.44122439922797,0,0.859284456339908,0,0,0,0.343395705182793,0,0,0.192619830407303,1.28664954824955,2.87093721161733,32.1922414227427,5.78806185809585,6.60789102167462,11.1035081470522,3.70561736593167,7.01708958651863,1.23682402162117,17.9410055591951,4.39250345697989,0,0.345430341731199,2.73473960559644,0,0,0,0,0,4.17813944881323,2.11312123358627,0,0,0,0,0,0.699397538597222,1.86623178009892,0,0,0,0,0,0,0,0,0.954013051960256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.2457206119359,0,0,0,0,0,0,0,7.69728012297455,2.21784129325568,0,0,0,0,0,3.28954660114309,0.496211178389294,0,0,0,0,0,0,1.1531308121143,0,0,0,0,3.07303986298317,0.667388411352415,0.078493092850514,0,0,0,0,0,0,0,0,0,0,1.03608082081518,0.17071847709395,0,0.430227358820278,0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| ||
|short_description=p@chr12:52628993..52629014,+ | |short_description=p@chr12:52628993..52629014,+ | ||
}} | }} |
Latest revision as of 09:30, 24 July 2015
Short description: | p@chr12:52628993..52629014, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52628993..52629014, + |
Coexpression cluster: | C689_Alveolar_mesothelioma_Retinal_Mesothelial_Prostate_bile_Tracheal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.34e-43 | 253 |
mesothelial cell | 8.33e-16 | 19 |
squamous epithelial cell | 1.42e-13 | 63 |
respiratory epithelial cell | 5.74e-13 | 13 |
lining cell | 1.05e-11 | 58 |
barrier cell | 1.05e-11 | 58 |
endo-epithelial cell | 6.43e-11 | 42 |
epithelial cell of tracheobronchial tree | 5.66e-10 | 9 |
epithelial cell of lower respiratory tract | 5.66e-10 | 9 |
endothelial cell of artery | 4.88e-08 | 9 |
endodermal cell | 2.85e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
respiratory primordium | 2.68e-17 | 38 |
endoderm of foregut | 2.68e-17 | 38 |
larynx | 8.51e-16 | 9 |
respiratory tract | 1.42e-15 | 54 |
segment of respiratory tract | 4.75e-13 | 47 |
respiratory system | 3.18e-12 | 74 |
primordium | 1.01e-11 | 160 |
chorion | 2.32e-11 | 7 |
endoderm-derived structure | 6.10e-11 | 160 |
endoderm | 6.10e-11 | 160 |
presumptive endoderm | 6.10e-11 | 160 |
foregut | 7.31e-11 | 87 |
extraembryonic membrane | 1.68e-10 | 14 |
membranous layer | 1.68e-10 | 14 |
epithelial bud | 3.65e-08 | 37 |
upper respiratory tract | 4.81e-08 | 19 |
endothelial tube | 4.88e-08 | 9 |
arterial system endothelium | 4.88e-08 | 9 |
endothelium of artery | 4.88e-08 | 9 |
subdivision of digestive tract | 8.74e-08 | 118 |
digestive system | 1.33e-07 | 145 |
digestive tract | 1.33e-07 | 145 |
primitive gut | 1.33e-07 | 145 |
tracheobronchial tree | 7.17e-07 | 15 |
lower respiratory tract | 7.17e-07 | 15 |
thoracic cavity element | 7.80e-07 | 34 |
thoracic cavity | 7.80e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.87e-11 | 106 |
cell type cancer | 1.42e-07 | 143 |