FFCP PHASE1:Hg19::chr12:133040010..133040030,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:133040010..133040030,+ | |||
|coexpression_cluster_id=C53 | |||
|description=CAGE_peak_at_chr12:133040010..133040030,+ | |description=CAGE_peak_at_chr12:133040010..133040030,+ | ||
|id=chr12:133040010..133040030,+ | |id=chr12:133040010..133040030,+ | ||
|ontology_enrichment_celltype=CL:0000342!2.07e-07!1;CL:0002565!2.07e-07!1 | |ontology_enrichment_celltype=CL:0000342!2.07e-07!1;CL:0002565!2.07e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0002319;5.66e-09;25!CL:0000243;8.34e-07;15!CL:0000125;8.34e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,5.74e-09,25;CL:0000243,8.59e-07,15;CL:0000125,8.59e-07,15;CL:0000030,8.59e-07,15;CL:0000339,8.59e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0006238;5.06e-10;10!UBERON:0003056;1.67e-09;3!CL:0000339;8.34e-07;15 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3093;2.89e-09;11!DOID:5409;1.40e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,3.01e-09,11;DOID:5409,1.40e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0001905!6.67e-14!2;UBERON:0002757!6.67e-14!2;UBERON:0010134!6.67e-14!2;UBERON:0002784!6.67e-14!2;UBERON:0005408!6.67e-14!2;UBERON:0001899!6.67e-14!2;UBERON:0000970!1.46e-07!20;UBERON:0002506!2.07e-07!1;UBERON:0001769!2.07e-07!1;UBERON:0003296!2.28e-07!4;UBERON:0010133!2.28e-07!4;UBERON:0003112!2.50e-07!1;UBERON:0000032!2.50e-07!1;UBERON:0005253!2.50e-07!1;UBERON:0003128!2.50e-07!1;UBERON:0002241!2.50e-07!1;UBERON:0001703!2.50e-07!1;UBERON:0004761!2.50e-07!1;UBERON:0009617!2.50e-07!1;UBERON:0002104!3.45e-07!21 | |ontology_enrichment_uberon=UBERON:0001905!6.67e-14!2;UBERON:0002757!6.67e-14!2;UBERON:0010134!6.67e-14!2;UBERON:0002784!6.67e-14!2;UBERON:0005408!6.67e-14!2;UBERON:0001899!6.67e-14!2;UBERON:0000970!1.46e-07!20;UBERON:0002506!2.07e-07!1;UBERON:0001769!2.07e-07!1;UBERON:0003296!2.28e-07!4;UBERON:0010133!2.28e-07!4;UBERON:0003112!2.50e-07!1;UBERON:0000032!2.50e-07!1;UBERON:0005253!2.50e-07!1;UBERON:0003128!2.50e-07!1;UBERON:0002241!2.50e-07!1;UBERON:0001703!2.50e-07!1;UBERON:0004761!2.50e-07!1;UBERON:0009617!2.50e-07!1;UBERON:0002104!3.45e-07!21 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;5.83e-50;2!UBERON:0002757;5.83e-50;2!UBERON:0010134;5.83e-50;2!UBERON:0005408;5.83e-50;2!UBERON:0001899;5.83e-50;2!UBERON:0003296;1.34e-25;4!UBERON:0010133;1.34e-25;4!UBERON:0002784;1.34e-25;4!UBERON:0001894;4.22e-15;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,5.15e-50,2;UBERON:0002757,5.15e-50,2;UBERON:0010134,5.15e-50,2;UBERON:0005408,5.15e-50,2;UBERON:0001899,5.15e-50,2;UBERON:0003296,1.26e-25,4;UBERON:0010133,1.26e-25,4;UBERON:0002784,1.26e-25,4;UBERON:0001894,4.07e-15,7;UBERON:0006222,4.07e-15,7;UBERON:0001017,1.06e-07,81;UBERON:0002368,4.98e-07,35;UBERON:0001016,5.81e-07,89 | |||
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|short_description=p@chr12:133040010..133040030,+ | |short_description=p@chr12:133040010..133040030,+ | ||
}} | }} |
Latest revision as of 06:52, 24 July 2015
Short description: | p@chr12:133040010..133040030, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:133040010..133040030, + |
Coexpression cluster: | C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 5.74e-09 | 25 |
glial cell (sensu Vertebrata) | 8.59e-07 | 15 |
glial cell | 8.59e-07 | 15 |
glioblast | 8.59e-07 | 15 |
glioblast (sensu Vertebrata) | 8.59e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
pineal body | 5.15e-50 | 2 |
regional part of epithalamus | 5.15e-50 | 2 |
secretory circumventricular organ | 5.15e-50 | 2 |
circumventricular organ | 5.15e-50 | 2 |
epithalamus | 5.15e-50 | 2 |
gland of diencephalon | 1.26e-25 | 4 |
neuroendocrine gland | 1.26e-25 | 4 |
regional part of diencephalon | 1.26e-25 | 4 |
diencephalon | 4.07e-15 | 7 |
future diencephalon | 4.07e-15 | 7 |
central nervous system | 1.06e-07 | 81 |
endocrine gland | 4.98e-07 | 35 |
nervous system | 5.81e-07 | 89 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 3.01e-09 | 11 |
lung small cell carcinoma | 1.40e-07 | 4 |