FFCP PHASE1:Hg19::chr12:119772810..119772834,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=160777 | |EntrezGene=160777 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28610 | |HGNC=28610 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000546345_5end | |association_with_transcript=0bp_to_ENST00000546345_5end | ||
|cluster_id=chr12:119772810..119772834,+ | |||
|coexpression_cluster_id=C365 | |||
|description=CAGE_peak_4_at_CCDC60_5end | |description=CAGE_peak_4_at_CCDC60_5end | ||
|id=chr12:119772810..119772834,+ | |id=chr12:119772810..119772834,+ | ||
|ontology_enrichment_celltype=CL:0002076!4.11e-10!43;CL:0000223!1.00e-09!59;CL:0002368!2.52e-08!13 | |ontology_enrichment_celltype=CL:0002076!4.11e-10!43;CL:0000223!1.00e-09!59;CL:0002368!2.52e-08!13 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009143;5.16e-21;1!UBERON:0004874;5.16e-21;1!UBERON:0009847;6.78e-08;3!UBERON:0003353;6.78e-08;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003101!1.73e-14!22;UBERON:0000079!1.73e-14!22;UBERON:0004119!5.34e-14!169;UBERON:0000925!5.34e-14!169;UBERON:0006595!5.34e-14!169;UBERON:0003135!1.34e-13!11;UBERON:0007023!6.73e-11!115;UBERON:0003127!9.63e-11!2;UBERON:0000341!3.20e-10!2;UBERON:0004921!5.12e-09!129;UBERON:0004185!5.12e-09!129;UBERON:0001007!1.33e-08!155;UBERON:0001555!1.33e-08!155;UBERON:0007026!1.33e-08!155;UBERON:0000473!1.61e-08!8;UBERON:0000464!3.05e-08!104;UBERON:0005156!3.70e-08!59;UBERON:0000990!3.70e-08!59;UBERON:0000065!4.73e-08!53;UBERON:0001004!1.06e-07!72;UBERON:0000466!3.96e-07!126;UBERON:0000161!5.47e-07!35;UBERON:0000077!5.84e-07!130;UBERON:0006947!7.17e-07!3;UBERON:0004054!7.17e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0003127;3.99e-41;2!UBERON:0006562;3.67e-40;2!UBERON:0002372;5.16e-21;1!UBERON:0000989;5.16e-21;1!UBERON:0008811;5.16e-21;1!UBERON:0001961;5.16e-21;1!UBERON:0001744;5.16e-21;1!UBERON:0001042;5.16e-21;1!UBERON:0001735;5.16e-21;1!UBERON:0003126;1.59e-12;7!UBERON:0001005;1.59e-12;7!UBERON:0000341;2.23e-11;2!UBERON:0001255;3.34e-11;2!UBERON:0001556;3.34e-11;2!UBERON:0001043;6.78e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003127,3.99e-41,2;UBERON:0000989,2.82e-21,1;UBERON:0008811,2.82e-21,1;UBERON:0006258,2.82e-21,1;UBERON:0005876,2.82e-21,1;UBERON:0004874,2.82e-21,1;UBERON:0002372,5.16e-21,1;UBERON:0001961,5.16e-21,1;UBERON:0001744,5.16e-21,1;UBERON:0001735,5.16e-21,1;UBERON:0003126,1.59e-12,7;UBERON:0001005,1.59e-12,7;UBERON:0000341,2.23e-11,2;UBERON:0001255,3.70e-11,2;UBERON:0001556,3.70e-11,2;UBERON:0007023,8.58e-11,114;UBERON:0006562,4.18e-08,11;UBERON:0001043,5.93e-08,3;UBERON:0009143,5.93e-08,3;UBERON:0004921,6.30e-08,118;UBERON:0003064,5.36e-07,28 | |||
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| ||
|short_description=p4@CCDC60 | |short_description=p4@CCDC60 | ||
}} | }} |
Latest revision as of 18:37, 16 September 2015
Short description: | p4@CCDC60 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CCDC60_5end |
Coexpression cluster: | C365_trachea_throat_aorta_lung_parotid_salivary_umbilical |
Association with transcript: | 0bp_to_ENST00000546345_5end |
EntrezGene: | CCDC60 |
HGNC: | 28610 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
open tracheal system trachea | 3.99e-41 | 2 |
penis | 2.82e-21 | 1 |
intromittent organ | 2.82e-21 | 1 |
lateral plate mesenchyme | 2.82e-21 | 1 |
undifferentiated genital tubercle | 2.82e-21 | 1 |
somatopleure | 2.82e-21 | 1 |
tonsil | 5.16e-21 | 1 |
mucosa-associated lymphoid tissue | 5.16e-21 | 1 |
lymphoid tissue | 5.16e-21 | 1 |
tonsillar ring | 5.16e-21 | 1 |
trachea | 1.59e-12 | 7 |
respiratory airway | 1.59e-12 | 7 |
throat | 2.23e-11 | 2 |
urinary bladder | 3.70e-11 | 2 |
lower urinary tract | 3.70e-11 | 2 |
adult organism | 8.58e-11 | 114 |
pharynx | 4.18e-08 | 11 |
esophagus | 5.93e-08 | 3 |
esophageal region | 5.93e-08 | 3 |
subdivision of digestive tract | 6.30e-08 | 118 |
intermediate mesoderm | 5.36e-07 | 28 |