FFCP PHASE1:Hg19::chr10:72201429..72201443,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr10:72201429..72201443,-
|short_description=p1@NODAL
|description=CAGE_peak_1_at_NODAL_5end
|association_with_transcript=-6bp_to_ENST00000287139_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4838 | |EntrezGene=4838 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7865 | |HGNC=7865 | ||
|TSSclassifier=strong | |||
|UniProt=Q96S42 | |UniProt=Q96S42 | ||
|association_with_transcript=-6bp_to_ENST00000287139_5end | |||
|cluster_id=chr10:72201429..72201443,- | |||
|coexpression_cluster_id=C3040 | |||
|description=CAGE_peak_1_at_NODAL_5end | |||
|id=chr10:72201429..72201443,- | |||
|ontology_enrichment_celltype=CL:0002322!3.41e-22!5;CL:0000047!2.31e-13!8;CL:0000540!5.42e-12!6;CL:0000031!5.42e-12!6;CL:0000404!5.42e-12!6;CL:0000039!1.29e-10!7;CL:0000586!1.29e-10!7 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.03e-47;5!CL:0000540;1.36e-25;6!CL:0000404;1.36e-25;6!CL:0000039;1.01e-22;7!CL:0000586;1.01e-22;7!CL:0002321;6.57e-16;15!CL:0000148;3.13e-09;10!CL:0000147;9.98e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.14e-47,5;CL:0000540,1.45e-25,6;CL:0000031,1.45e-25,6;CL:0000404,1.45e-25,6;CL:0000039,1.01e-22,7;CL:0000586,1.01e-22,7;CL:0000047,2.97e-19,8;CL:0000148,3.22e-09,10;CL:0000541,3.22e-09,10;CL:0000133,5.93e-07,59 | |||
|ontology_enrichment_development_v019=CL:0000031;1.36e-25;6!UBERON:0009117;5.49e-16;10!UBERON:0005564;5.49e-16;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;5.79e-11;22!DOID:2994;5.79e-11;22!DOID:0050619;9.05e-11;1!DOID:1357;9.05e-11;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,5.85e-11,22;DOID:2994,5.85e-11,22;DOID:0050619,9.05e-11,1;DOID:1357,9.05e-11,1 | |||
|ontology_enrichment_uberon=UBERON:0001017!7.43e-27!82;UBERON:0005743!2.39e-25!86;UBERON:0000073!2.06e-22!94;UBERON:0001016!2.06e-22!94;UBERON:0001950!3.02e-21!20;UBERON:0001893!1.21e-19!34;UBERON:0002619!3.34e-19!22;UBERON:0001049!2.12e-18!57;UBERON:0005068!2.12e-18!57;UBERON:0006241!2.12e-18!57;UBERON:0007135!2.12e-18!57;UBERON:0000955!4.34e-18!69;UBERON:0006238!4.34e-18!69;UBERON:0001869!5.69e-18!32;UBERON:0002791!2.20e-17!33;UBERON:0000956!9.96e-17!25;UBERON:0000203!9.96e-17!25;UBERON:0002780!7.58e-16!41;UBERON:0001890!7.58e-16!41;UBERON:0006240!7.58e-16!41;UBERON:0002616!1.60e-15!59;UBERON:0003080!2.09e-15!42;UBERON:0002020!3.46e-14!34;UBERON:0003528!3.46e-14!34;UBERON:0000153!2.95e-13!129;UBERON:0007811!2.95e-13!129;UBERON:0004121!4.13e-13!169;UBERON:0000924!1.16e-12!173;UBERON:0006601!1.16e-12!173;UBERON:0003075!2.79e-12!86;UBERON:0007284!2.79e-12!86;UBERON:0000033!1.20e-11!123;UBERON:0002346!1.50e-11!90;UBERON:0003056!2.72e-11!61;UBERON:0000473!2.74e-09!8;UBERON:0002021!4.72e-08!5;UBERON:0001872!6.32e-08!5;UBERON:0007023!3.88e-07!115;UBERON:0003135!9.57e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;1.17e-20;49!UBERON:0000473;6.43e-20;8!UBERON:0003135;1.49e-14;11!UBERON:0001764;9.05e-11;1!UBERON:0001825;9.05e-11;1!UBERON:0000991;1.06e-07;21!UBERON:0003101;2.35e-07;22!UBERON:0000079;2.35e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,6.43e-20,8;UBERON:0003135,1.49e-14,11;UBERON:0001764,9.05e-11,1;UBERON:0001825,9.05e-11,1;UBERON:0000991,1.06e-07,21;UBERON:0009196,1.06e-07,21;UBERON:0009117,1.06e-07,21;UBERON:0005564,1.06e-07,21;UBERON:0004176,2.35e-07,22;UBERON:0003101,2.35e-07,22;UBERON:0000079,2.35e-07,22 | |||
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| ||
|short_description=p1@NODAL | |||
}} | }} |
Latest revision as of 02:04, 19 September 2015
Short description: | p1@NODAL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NODAL_5end |
Coexpression cluster: | C3040_testicular_iPS_HES3GFP_H9_maxillary_temporal_teratocarcinoma |
Association with transcript: | -6bp_to_ENST00000287139_5end |
EntrezGene: | NODAL |
HGNC: | 7865 |
UniProt: | Q96S42 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.14e-47 | 5 |
neuron | 1.45e-25 | 6 |
neuroblast | 1.45e-25 | 6 |
electrically signaling cell | 1.45e-25 | 6 |
germ line cell | 1.01e-22 | 7 |
germ cell | 1.01e-22 | 7 |
neuronal stem cell | 2.97e-19 | 8 |
melanocyte | 3.22e-09 | 10 |
melanoblast | 3.22e-09 | 10 |
neurectodermal cell | 5.93e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
testis | 6.43e-20 | 8 |
male reproductive organ | 1.49e-14 | 11 |
maxillary sinus | 9.05e-11 | 1 |
paranasal sinus | 9.05e-11 | 1 |
gonad | 1.06e-07 | 21 |
indifferent external genitalia | 1.06e-07 | 21 |
indifferent gonad | 1.06e-07 | 21 |
gonad primordium | 1.06e-07 | 21 |
external genitalia | 2.35e-07 | 22 |
male organism | 2.35e-07 | 22 |
male reproductive system | 2.35e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 5.85e-11 | 22 |
germ cell cancer | 5.85e-11 | 22 |
paranasal sinus cancer | 9.05e-11 | 1 |
maxillary sinus cancer | 9.05e-11 | 1 |