FFCP PHASE1:Hg19::chr10:64028400..64028433,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:64028400..64028433,-
|short_description=p1@RTKN2
|description=CAGE_peak_1_at_RTKN2_5end
|association_with_transcript=32bp_to_ENST00000373789,ENST000003952...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=219790 | |EntrezGene=219790 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19364 | |HGNC=19364 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IZC4 | |UniProt=Q8IZC4 | ||
|association_with_transcript=32bp_to_ENST00000373789,ENST00000395260,ENST00000395265,NM_145307,uc001jlw.2,uc001jlx.2_5end | |||
|cluster_id=chr10:64028400..64028433,- | |||
|coexpression_cluster_id=C3033 | |||
|description=CAGE_peak_1_at_RTKN2_5end | |||
|id=chr10:64028400..64028433,- | |||
|ontology_enrichment_celltype=CL:0000133!4.12e-11!59;CL:0002319!8.64e-10!25;CL:0000066!1.83e-09!254;CL:0000333!1.74e-07!41 | |||
|ontology_enrichment_celltype_v019=CL:0002319;1.04e-10;25!CL:0002321;5.13e-08;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000133,9.21e-13,59;CL:0002319,8.32e-11,25;CL:0000066,3.53e-10,253;CL:0000333,3.81e-08,41;CL:0000221,4.83e-08,72;CL:0000047,4.28e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000133;6.24e-07;59 | |||
|ontology_enrichment_disease=DOID:162!5.56e-39!235;DOID:14566!1.50e-37!239;DOID:0050687!3.27e-26!143;DOID:305!7.57e-23!106;DOID:0050686!2.56e-17!137;DOID:3095!1.70e-08!22;DOID:2994!1.70e-08!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.04e-09;22!DOID:2994;2.04e-09;22!DOID:305;6.84e-08;106!DOID:3119;2.66e-07;14!DOID:0050687;3.82e-07;143 | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.10e-38,235;DOID:14566,3.63e-36,239;DOID:0050687,1.04e-26,143;DOID:305,1.17e-21,106;DOID:0050686,7.78e-16,137;DOID:3095,1.38e-09,22;DOID:2994,1.38e-09,22;DOID:3119,3.43e-07,14 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0.491467873003018,0,0.436882744260345,0.263766978228454,0.866364470720326,0,0,0,0,0.487932798790507,1.96993692922861,1.42800483870977,0.313454721478088,11.4494394852423,13.4136936571427,11.8010081219115,0,0,0,0,0,0.309632246632152,0,0.30120591877825,0,3.95082722959538,1.27952309238679,5.87200878669694,0,0.200544447470142,0.434021741431704,0,0,0,0,0,0,0,0.822335776043652,0,0,0,0.236482229888585,1.03423704220986,0,0,0.188242339542605,0.272906150057846,0.224723484445085,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,2.63384084775077,0.196709770113833,0,0,1.00311897234407,0.32592226663359,0,0,1.00269411196656,0,0.221533894583621,0,1.0247305578054,0,1.64437904603676,1.65810010671509,1.15921234294021,0,0,0,1.58633079776593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,1.80719576192283,0.50133791063589,0.434539556882471,0.795285947051099,0,5.38848457835187,3.99112915432615,3.86473057049755,0.589405839739707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0.35576626268671,0,0,0,0,0,0,1.96459402224975,3.59246996201872,2.0270066486998,0,0.949265659568129,0.366403487860815,0,0,0.436094052142534,0,2.02608818663328,0.529636723252875,1.72101972449288,2.83734705758686,0,0,0,0,0.404132016209064,0.326923806226917,0.302714855289863,0,0,0,0.570471821544449,0,1.40921398372518,0.323745888736263,0.421352420106746,0,2.7023549808589,0.103325781175765,0,0.494533858557114,0,0,2.18836948140286,2.62748891731125,0.554128230968366,0.438977620880838,1.22595118319608,0.300476117813194,0.453728732640084,0.179389635688862,0,0,0.300091096084402,0.309157587715317,0.515281080091258,0,0.843881661206331,0.0974370051611986,0,0.184099797284599,0,0.710019185033229,0.906768884048762,1.86516651541536,0.386521706326594,0,0,8.66013313520127,9.14455401418248,8.59835177234436,7.77457912615278,7.56962552626885,14.5990943630332,0,0.643240938192885,0,0,0,2.60274960087657,2.36018566109342,2.16909926895134,2.86764329104224,1.96091499683166,1.89816495288877,1.07865046528132,1.76599318612811,0.769494313892781,0.738155454624648,0,0,0,0,0,0,4.41463099414651,8.85516757510418,0.343135620597051,0.109750285408626,0,0.201057944823262,0.0925884451585296,0.977424915930974,0,0,2.78232971940184,0.117408694235822,0.144366447761074,0,0.190254152234598,0.790204397959275,1.71697232418975,0.246217006087397,0.702012795417713,1.0404181360211,0,0,0,1.79117045405697,1.45316969256981,2.68367875415648,2.46331618947972,1.76096868026452,0,0.288239906833923,0,4.63534628332834,0,0,3.4214489204541,2.87916979569306,3.30377363628309,1.42913216315289,1.45770409648969,0.43596006883328,2.3468251462704,0.646358578788889,0,0,2.6593811658487,2.08014873822732,0.257207374262142,0,0.532844358032199,0,0,0,0,0,0,0,1.74306691720059,0.199945982364114,0,0.502257091432126,0,0.718874566474748,1.14861935834114,5.70547620162874,0.723906533337896,1.2328579353023,1.61154866915906,1.45710687191585,0.197030760201927,0,0,7.36874410245144,2.60279707715243,3.86644406388848,5.02548796003046,8.93114252314428,0,0,0,0.613457458595699,0.500170521059677,0.542530047399471,0.415941723061614,1.60586089917446,1.10391690523754,2.57711112983969,0,0,0,1.99267679560631,2.21243002250044,1.21637060255316,0,0,0.206768026122887,0,0,0,0,0.30239029332968,0.744323423456331,0.306923946576125,0,0.128139149255701,0.511707249066704,0,0,1.3878872442239,2.30830242907065,2.87445046048332,3.63478100428535,1.62694529843943,8.21844257223031,0,0.460404944679482,2.29628896329214,3.27764102412091,1.04899531967539,0.902399225814824,2.69553679865452,3.13739907670742,1.46139224653261,3.27210049567915,0,0.510281115829547,1.29549549661284,0,0.812839312631559,1.00337954770971,1.52925763827023,2.49322802678617,1.34324852833307,0,0,2.56450125116389,1.31205858279882,1.62689197332152,0.618246069886334,8.42439076328759,8.99353549134409,0,0,1.6068392984416,0.290012154876366,0.308097234229289,0.460511024178389,1.37836572484531,1.07420244868274,1.16013355131383,0.93749290157711,0.534192213880424,0,0.192190067365106,0,0.10115778085555,0,0.31481234683064,0,0.308033580176089,0,0,0,0.858749320451947,0.372158369359667,2.84741482246853,0.190630193923825,0.255897791311334,0,0,0,1.07923474549989,0.823611089208164,0.471249609382746,0,0,0.421258456238981,0,0.974853958525138,0,4.36799716505554,0.282810863907425,0,0,0,0,0,0,0.608731130888112,0.6196469961995,1.12678241012897,1.29070216983646,0,0,3.54761064070598,0.211107635297664,0.987884678879706,0.75894634753143,0.349934720244983,0.0962221127255121,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,4.80708320073629,2.88743956579008,11.7619303670895,9.66176510653737,5.04942245417557,18.9237303306782,12.1163967273905,0.997896857164083,0,4.44514523720154,5.19395104439289,3.65036331547496,0,0,5.01268954180134,0,0.321176150207399,0.80719882876419,0.851692475380653,7.55711758462682,4.91585222893533,3.35514161838624,6.67396566847634,0,0.835218521685727,2.461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| ||
|short_description=p1@RTKN2 | |||
}} | }} |
Latest revision as of 18:59, 18 September 2015
Short description: | p1@RTKN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RTKN2_5end |
Coexpression cluster: | C3033_non_colon_hepatoblastoma_astrocytoma_prostate_rhabdomyosarcoma_acute |
Association with transcript: | 32bp_to_ENST00000373789, ENST00000395260, ENST00000395265, NM_145307, uc001jlw.2, uc001jlx.2_5end |
EntrezGene: | RTKN2 |
HGNC: | 19364 |
UniProt: | Q8IZC4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectodermal cell | 9.21e-13 | 59 |
neural cell | 8.32e-11 | 25 |
epithelial cell | 3.53e-10 | 253 |
migratory neural crest cell | 3.81e-08 | 41 |
ectodermal cell | 4.83e-08 | 72 |
neuronal stem cell | 4.28e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.10e-38 | 235 |
disease of cellular proliferation | 3.63e-36 | 239 |
cell type cancer | 1.04e-26 | 143 |
carcinoma | 1.17e-21 | 106 |
organ system cancer | 7.78e-16 | 137 |
germ cell and embryonal cancer | 1.38e-09 | 22 |
germ cell cancer | 1.38e-09 | 22 |
gastrointestinal system cancer | 3.43e-07 | 14 |