FFCP PHASE1:Hg19::chr11:86383072..86383082,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10873 | |EntrezGene=10873 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6985 | |HGNC=6985 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-65bp_to_ENST00000530520_5end | |association_with_transcript=-65bp_to_ENST00000530520_5end | ||
|cluster_id=chr11:86383072..86383082,- | |||
|description=CAGE_peak_16_at_ME3_5end | |description=CAGE_peak_16_at_ME3_5end | ||
|id=chr11:86383072..86383082,- | |id=chr11:86383072..86383082,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002032;3.99e-50;1!CL:0002553;3.99e-50;1!CL:0000557;3.99e-50;1!CL:0000123;4.32e-26;2!CL:0000242;4.32e-26;2!CL:0000312;2.66e-11;5!CL:0000240;1.22e-09;6!CL:0000311;1.22e-09;6!CL:0000079;1.22e-09;6!CL:0000237;1.22e-09;6!CL:0000362;7.48e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002553,3.99e-50,1;CL:0000242,4.32e-26,2;CL:0000312,2.66e-11,5;CL:0000240,1.22e-09,6;CL:0000311,1.22e-09,6;CL:0000079,1.22e-09,6;CL:0000237,1.22e-09,6;CL:0000036,1.22e-09,6;CL:0000357,1.22e-09,6;CL:0000114,1.22e-09,6;CL:0000362,7.48e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0010122;7.14e-26;2!CL:0000357;1.22e-09;6!CL:0000114;1.22e-09;6 | |||
|ontology_enrichment_disease=DOID:305!8.79e-07!106 | |ontology_enrichment_disease=DOID:305!8.79e-07!106 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.06e-17!94;UBERON:0001016!1.06e-17!94;UBERON:0005743!5.01e-15!86;UBERON:0001017!6.83e-14!82;UBERON:0001049!2.82e-11!57;UBERON:0005068!2.82e-11!57;UBERON:0006241!2.82e-11!57;UBERON:0007135!2.82e-11!57;UBERON:0007023!3.95e-11!115;UBERON:0002616!1.15e-10!59;UBERON:0003075!6.64e-10!86;UBERON:0007284!6.64e-10!86;UBERON:0000119!7.72e-10!312;UBERON:0000955!9.29e-10!69;UBERON:0006238!9.29e-10!69;UBERON:0000483!1.24e-09!309;UBERON:0004121!2.34e-09!169;UBERON:0002346!4.06e-09!90;UBERON:0000924!7.05e-09!173;UBERON:0006601!7.05e-09!173;UBERON:0002780!1.82e-08!41;UBERON:0001890!1.82e-08!41;UBERON:0006240!1.82e-08!41;UBERON:0003080!3.66e-08!42;UBERON:0002020!3.95e-08!34;UBERON:0003528!3.95e-08!34;UBERON:0000369!9.28e-08!4;UBERON:0002435!9.28e-08!4;UBERON:0000204!9.28e-08!4;UBERON:0010082!9.28e-08!4;UBERON:0000025!1.97e-07!194;UBERON:0000481!2.07e-07!347;UBERON:0003056!2.23e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0001873;7.14e-26;2!UBERON:0005383;9.45e-18;3!UBERON:0005382;9.45e-18;3!UBERON:0000369;1.13e-13;4!UBERON:0002435;1.13e-13;4!UBERON:0000204;1.13e-13;4!UBERON:0009663;2.18e-08;7!UBERON:0002420;8.37e-07;9!UBERON:0000125;8.37e-07;9!UBERON:0007245;8.37e-07;9!UBERON:0002308;8.37e-07;9!UBERON:0010009;8.37e-07;9!UBERON:0010011;8.37e-07;9!UBERON:0000454;8.37e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001873,5.56e-26,2;UBERON:0010122,5.56e-26,2;UBERON:0005383,8.00e-18,3;UBERON:0005382,8.00e-18,3;UBERON:0000369,1.00e-13,4;UBERON:0002435,1.00e-13,4;UBERON:0000204,1.00e-13,4;UBERON:0010082,1.00e-13,4;UBERON:0009663,2.03e-08,7;UBERON:0002420,7.91e-07,9;UBERON:0000125,7.91e-07,9;UBERON:0007245,7.91e-07,9;UBERON:0002308,7.91e-07,9;UBERON:0010009,7.91e-07,9;UBERON:0010011,7.91e-07,9;UBERON:0000454,7.91e-07,9 | |||
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| ||
|short_description=p16@ME3 | |short_description=p16@ME3 | ||
}} | }} |
Latest revision as of 22:27, 24 September 2015
Short description: | p16@ME3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_ME3_5end |
Coexpression cluster: | NA |
Association with transcript: | -65bp_to_ENST00000530520_5end |
EntrezGene: | ME3 |
HGNC: | 6985 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 3.99e-50 | 1 |
Merkel cell | 4.32e-26 | 2 |
keratinocyte | 2.66e-11 | 5 |
stratified squamous epithelial cell | 1.22e-09 | 6 |
keratin accumulating cell | 1.22e-09 | 6 |
stratified epithelial cell | 1.22e-09 | 6 |
keratinizing barrier epithelial cell | 1.22e-09 | 6 |
epithelial fate stem cell | 1.22e-09 | 6 |
stratified epithelial stem cell | 1.22e-09 | 6 |
surface ectodermal cell | 1.22e-09 | 6 |
epidermal cell | 7.48e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
caudate nucleus | 5.56e-26 | 2 |
future caudate nucleus | 5.56e-26 | 2 |
caudate-putamen | 8.00e-18 | 3 |
dorsal striatum | 8.00e-18 | 3 |
corpus striatum | 1.00e-13 | 4 |
striatum | 1.00e-13 | 4 |
ventral part of telencephalon | 1.00e-13 | 4 |
future corpus striatum | 1.00e-13 | 4 |
telencephalic nucleus | 2.03e-08 | 7 |
basal ganglion | 7.91e-07 | 9 |
neural nucleus | 7.91e-07 | 9 |
nuclear complex of neuraxis | 7.91e-07 | 9 |
nucleus of brain | 7.91e-07 | 9 |
aggregate regional part of brain | 7.91e-07 | 9 |
collection of basal ganglia | 7.91e-07 | 9 |
cerebral subcortex | 7.91e-07 | 9 |