FFCP PHASE1:Hg19::chr16:55689991..55690000,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6530 | |EntrezGene=6530 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11048 | |HGNC=11048 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-21bp_to_uc002eif.2,uc010ccd.2_5end | |association_with_transcript=-21bp_to_uc002eif.2,uc010ccd.2_5end | ||
|cluster_id=chr16:55689991..55690000,+ | |||
|coexpression_cluster_id=C3572 | |||
|description=CAGE_peak_6_at_SLC6A2_5end | |description=CAGE_peak_6_at_SLC6A2_5end | ||
|id=chr16:55689991..55690000,+ | |id=chr16:55689991..55690000,+ | ||
|ontology_enrichment_celltype=CL:0002541!2.40e-19!3;CL:0000244!2.60e-14!4;CL:0000731!2.60e-14!4 | |ontology_enrichment_celltype=CL:0002541!2.40e-19!3;CL:0000244!2.60e-14!4;CL:0000731!2.60e-14!4 | ||
|ontology_enrichment_celltype_v019=CL:0002541;1.52e-44;3!CL:0000349;2.39e-16;19!CL:0000244;1.44e-09;4!CL:0000731;1.44e-09;4!CL:0000333;5.35e-08;5!CL:0002537;6.55e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,2.38e-44,3;CL:0000349,2.80e-16,19;CL:0000244,1.22e-09,4;CL:0000731,1.22e-09,4;CL:0002537,7.01e-08,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050619!5.19e-07!1;DOID:1357!5.19e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:169;7.17e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:169,7.17e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0000476!2.40e-19!3;UBERON:0000920!2.40e-19!3;UBERON:0003124!1.90e-14!7;UBERON:0000365!1.50e-11!5;UBERON:0005631!5.99e-11!14;UBERON:0000158!5.99e-11!14;UBERON:0005910!1.05e-09!6;UBERON:0007029!1.97e-07!1;UBERON:0001736!2.23e-07!1;UBERON:0006298!2.23e-07!1;UBERON:0002171!3.02e-07!1;UBERON:0006518!3.02e-07!1;UBERON:0008949!3.02e-07!1;UBERON:0000101!3.02e-07!1;UBERON:0002167!3.02e-07!1;UBERON:0001764!5.19e-07!1;UBERON:0001825!5.19e-07!1;UBERON:0006834!6.20e-07!1;UBERON:0002372!7.40e-07!1;UBERON:0001961!7.40e-07!1;UBERON:0001744!7.40e-07!1;UBERON:0001735!7.40e-07!1;UBERON:0001043!7.87e-07!4;UBERON:0009143!7.87e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;1.52e-44;3!UBERON:0000920;1.52e-44;3!UBERON:0005631;3.07e-30;10!UBERON:0000158;3.07e-30;10!UBERON:0000478;4.11e-13;24!UBERON:0000013;5.35e-08;5!UBERON:0002410;5.35e-08;5!UBERON:0000365;6.55e-08;5!UBERON:0005910;8.48e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,2.38e-44,3;UBERON:0005631,8.88e-22,14;UBERON:0000158,8.88e-22,14;UBERON:0003124,1.04e-19,7;UBERON:0000478,4.65e-13,24;UBERON:0000013,5.35e-08,5;UBERON:0002410,5.35e-08,5;UBERON:0000365,5.73e-08,5;UBERON:0005910,7.58e-07,6 | |||
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|short_description=p6@SLC6A2 | |short_description=p6@SLC6A2 | ||
}} | }} |
Latest revision as of 00:34, 17 September 2015
Short description: | p6@SLC6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SLC6A2_5end |
Coexpression cluster: | C3572_neuroblastoma_placenta_chorionic_amniotic_epididymis_Urothelial_Placental |
Association with transcript: | -21bp_to_uc002eif.2, uc010ccd.2_5end |
EntrezGene: | SLC6A2 |
HGNC: | 11048 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 2.38e-44 | 3 |
extraembryonic cell | 2.80e-16 | 19 |
transitional epithelial cell | 1.22e-09 | 4 |
urothelial cell | 1.22e-09 | 4 |
amnion mesenchymal stem cell | 7.01e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 2.38e-44 | 3 |
extraembryonic membrane | 8.88e-22 | 14 |
membranous layer | 8.88e-22 | 14 |
chorion | 1.04e-19 | 7 |
extraembryonic structure | 4.65e-13 | 24 |
sympathetic nervous system | 5.35e-08 | 5 |
autonomic nervous system | 5.35e-08 | 5 |
urothelium | 5.73e-08 | 5 |
transitional epithelium | 7.58e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 7.17e-07 | 6 |