FFCP PHASE1:Hg19::chr15:67391010..67391046,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4088 | |EntrezGene=4088 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6769 | |HGNC=6769 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000560175_5end | |association_with_transcript=0bp_to_ENST00000560175_5end | ||
|cluster_id=chr15:67391010..67391046,+ | |||
|coexpression_cluster_id=C526 | |||
|description=CAGE_peak_13_at_SMAD3_5end | |description=CAGE_peak_13_at_SMAD3_5end | ||
|id=chr15:67391010..67391046,+ | |id=chr15:67391010..67391046,+ | ||
|ontology_enrichment_celltype=CL:0000791!1.24e-09!18;CL:0000789!1.24e-09!18;CL:0002420!1.24e-09!18;CL:0002419!1.24e-09!18;CL:0000790!1.24e-09!18;CL:0000084!1.29e-08!25;CL:0000827!1.29e-08!25;CL:0002320!1.77e-08!365;CL:0000625!8.74e-08!11;CL:0000134!7.61e-07!358 | |ontology_enrichment_celltype=CL:0000791!1.24e-09!18;CL:0000789!1.24e-09!18;CL:0002420!1.24e-09!18;CL:0002419!1.24e-09!18;CL:0000790!1.24e-09!18;CL:0000084!1.29e-08!25;CL:0000827!1.29e-08!25;CL:0002320!1.77e-08!365;CL:0000625!8.74e-08!11;CL:0000134!7.61e-07!358 | ||
|ontology_enrichment_celltype_v019=CL:0000791;5.07e-16;18!CL:0000789;5.07e-16;18!CL:0002419;5.07e-16;18!CL:0000625;1.91e-12;11!CL:0000084;2.17e-10;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.97e-16,18;CL:0000789,2.97e-16,18;CL:0002420,2.97e-16,18;CL:0002419,2.97e-16,18;CL:0000790,2.97e-16,18;CL:0000625,1.49e-12,11;CL:0000084,1.51e-10,25;CL:0000827,1.51e-10,25 | |||
|ontology_enrichment_development_v019=CL:0000790;5.07e-16;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;3.09e-07;5!DOID:450;3.09e-07;5!DOID:66;3.09e-07;5!DOID:423;3.09e-07;5!DOID:0080000;3.09e-07;5!DOID:11722;3.09e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,7.41e-07,5;DOID:450,7.41e-07,5;DOID:66,7.41e-07,5;DOID:423,7.41e-07,5;DOID:0080000,7.41e-07,5;DOID:11722,7.41e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0002384!5.47e-09!375;UBERON:0000020!1.16e-07!23;UBERON:0000970!1.21e-07!20;UBERON:0000019!1.69e-07!19;UBERON:0000047!1.69e-07!19;UBERON:0004088!1.69e-07!19;UBERON:0003072!1.69e-07!19;UBERON:0003071!1.69e-07!19;UBERON:0004128!1.69e-07!19;UBERON:0001032!5.02e-07!24;UBERON:0004456!5.02e-07!24;UBERON:0002104!6.00e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;9.80e-09;5!UBERON:0002216;9.80e-09;5!UBERON:0011134;9.80e-09;5!UBERON:0002209;9.80e-09;5!UBERON:0002213;9.80e-09;5!UBERON:0007844;9.80e-09;5!UBERON:0011138;9.80e-09;5!UBERON:0001130;9.80e-09;5!UBERON:0001066;9.80e-09;5!UBERON:0001468;9.80e-09;5!UBERON:0004765;1.24e-07;26 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,6.71e-09,5;UBERON:0002216,6.71e-09,5;UBERON:0011134,6.71e-09,5;UBERON:0002209,6.71e-09,5;UBERON:0002213,6.71e-09,5;UBERON:0005856,6.71e-09,5;UBERON:0005866,6.71e-09,5;UBERON:0005863,6.71e-09,5;UBERON:0007844,6.71e-09,5;UBERON:0011138,6.71e-09,5;UBERON:0001130,6.71e-09,5;UBERON:0001066,6.71e-09,5;UBERON:0001468,6.71e-09,5 | |||
|phase1_expression=0.181678379270557,0,0,0,0.446961094427288,0,0,0,0,0,1.39560233594486,0,0,2.22779435328084,2.98257638155124,0,0,0,0,2.33930010345897,2.24400760368678,2.82109249330279,0.286235987131057,0.958120975510189,0.125542639594803,0,0,0,0,1.15148819429164,0.309632246632152,0,0,0,0,0,2.05520307534393,0,1.20326668482085,1.08505435357926,0.223915474239924,0.32389366601898,0.257575567634187,0.726991193897824,1.51150377475524,0.970336244751265,0.697287110717054,0.822335776043652,0,0,0.512321413058201,0.236482229888585,0.344745680736619,0.645484683583826,0,0.752969358170419,0.545812300115692,0,0.306083892370903,0.641858054152187,0.639337125799041,0.659702600373432,1.19678194572979,0,0,0,0.622822248995575,0.251248665256743,1.0429658368404,0,0.605399502633369,0,0,0,1.06302149982522,0.419317291016752,0.112328631146495,0.300353785683013,0,0,0.59675003159727,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,3.96513985737078,2.80254281490768,0.790152254325231,2.16380747125216,1.17903228824749,1.64481199199607,0,0,0.473447805734733,0,1.33692548262208,0.294605907474837,0.221533894583621,0.270803863765016,0.512365278902701,0.130059347559878,0.328875809207352,0,0,0,0.535081656179426,2.09071047609954,2.71942422474159,1.91610246800961,3.09264700934367,5.56643322442906,1.27426165729639,3.90650072313851,4.75226022224187,1.50575119077773,3.07167866770604,1.24930726552346,1.65744076430812,0.821127996921047,1.41124720257313,2.40696176205157,1.15859523106239,0,0.670700859703636,0.767175371061182,1.80719576192283,0.50133791063589,0.579386075843295,0.795285947051099,0,1.32348744029695,0.886917589850256,0.790513071238134,0.0654895377488563,0.728590576585084,2.22470665670658,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.79703457356788,0,0.12663051166458,0,0,0,0.560677600142307,1.06748995729705,2.96001058100592,0.311211035399766,0.269421344139376,0,0.151357427644931,0,1.17160715916898,0,0,0.597794722207204,0.117434498643765,0.323745888736263,0.280901613404497,2.24569588380383,0.982674538494144,1.96318984233954,0,0.247266929278557,2.73048408581408,0.718618141816238,0.168336113954066,0.625592599359821,1.38532057742091,0,0,0.45071417671979,0.340296549480063,1.07633781413317,1.06778694409284,1.05965950579781,1.80054657650641,2.26715564324566,0.515281080091258,1.30281799432113,0.168776332241266,0.0974370051611986,0.504867548488229,0.552299391853796,1.13152239773168,0,0.403008392910561,0.169560592310488,0,0,0.286804595389004,0,0,0,0,0,0,0,0.643240938192885,1.38134921352481,5.10804720835177,5.77503585335668,0,0,0,0,0,0,0,0,0,0.738155454624648,1.40241773803446,0.8231480226628,0,0,0,0,0,0,2.57351715447788,0.329250856225877,0,0,0.0925884451585296,0.977424915930974,11.4392826380754,4.3299402607582,0.579652024875384,0.234817388471643,0,0,0,0,0,0,0,0,0,0.839910640994298,0,0,0,0,0,0.088048434013226,0.207328115540772,0.288239906833923,0.12624243342638,0,0.381988425558278,0,0,0,0,0,0.224262168690721,0,0.22001485746285,0,7.15312891703765,0,0,0,2.57207374262142,0,1.5985330740966,0.428933980974443,1.62786481617433,0,0,1.06617584622764,0,0.602878754119172,0,0.299918973546171,0,0,0,1.19812427745791,0,1.42636905040718,1.01346914667305,1.43833425785268,0.179060963239896,5.04383147970873,0.394061520403854,1.94064817373566,0.513372145118994,0,0,0,0,0,0,0,0.414415513436035,3.31267027641678,2.50085260529839,2.98391526069709,0,0,0,0,8.72743689210385,6.82222512167955,3.10419213877515,0,0.737476674166813,0.60818530127658,0.783204629850962,0.343143423810856,0.82707210449155,1.50999940573032,1.17400313583789,0,0,0,0,0,0.280660094433074,0.256278298511402,0,0,0,0.154209693802656,0.177561725313127,0.246381468041427,0.519254429183621,0.232420756919918,0,0,0,0.459257792658427,0.364182336013434,0.524497659837696,0.451199612907412,0.308061348417659,1.56869953835371,0,0.105551628892876,1.13733384070897,0,0.431831832204279,0,0.270946437543853,0.501689773854853,0,0,1.11937377361089,0.219259876645935,0.522870902049801,2.82095137628028,2.95213181129735,2.60302715731442,0,1.83138929636687,2.14524699793529,0,0,0,0,0,0.614014698904518,0.137836572484531,0.751941714077915,1.0151168573996,0.340906509664404,0,0,0,0,0,0,0,0,0,0,0.869932992075073,0,0,0,0.632758849437452,0.38126038784765,0.255897791311334,2.1396949401696,0,0,1.07923474549989,0.823611089208164,0.353437207037059,0.202182481573316,0,0,0,0,0,0.409499734223957,0.141405431953713,1.13008116620243,0,0,0,2.31510213706675,0.655894752046633,0.202910376962704,0.6196469961995,0,0.717056761020258,0.491245205065606,0,0.709522128141196,0.633322905892992,0.987884678879706,0.379473173765715,4.54915136318478,0,0,0,0,0,0,0.443430153536676,0,0,0,0.569647187174163,0.476463550915578,0.822724546172388,0,0,1.58625035258854,0,0,0,0,0,0.0711418433484141,0.318852545457645,0.399158742865633,0.957526850661834,12.4887413807091,0,0,1.36940807419915,0,0,0,0.1605880751037,0.201799707191048,0.425846237690326,0,0,0,0,0.781552381608161,0.835218521685727,1.23087398947712,0.270455678475983,0.33307196799782,4.22961015263549,0,1.02555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| ||
|short_description=p13@SMAD3 | |short_description=p13@SMAD3 | ||
}} | }} |
Latest revision as of 17:05, 18 September 2015
Short description: | p13@SMAD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_SMAD3_5end |
Coexpression cluster: | C526_meningioma_bile_cervical_fibrosarcoma_prostate_epidermoid_lung |
Association with transcript: | 0bp_to_ENST00000560175_5end |
EntrezGene: | SMAD3 |
HGNC: | 6769 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.97e-16 | 18 |
alpha-beta T cell | 2.97e-16 | 18 |
immature T cell | 2.97e-16 | 18 |
mature T cell | 2.97e-16 | 18 |
immature alpha-beta T cell | 2.97e-16 | 18 |
CD8-positive, alpha-beta T cell | 1.49e-12 | 11 |
T cell | 1.51e-10 | 25 |
pro-T cell | 1.51e-10 | 25 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 6.71e-09 | 5 |
symphysis | 6.71e-09 | 5 |
nonsynovial joint | 6.71e-09 | 5 |
fibrous joint | 6.71e-09 | 5 |
cartilaginous joint | 6.71e-09 | 5 |
developing mesenchymal condensation | 6.71e-09 | 5 |
pre-cartilage condensation | 6.71e-09 | 5 |
cartilaginous condensation | 6.71e-09 | 5 |
cartilage element | 6.71e-09 | 5 |
post-cranial axial skeletal system | 6.71e-09 | 5 |
vertebral column | 6.71e-09 | 5 |
intervertebral disk | 6.71e-09 | 5 |
intervertebral joint | 6.71e-09 | 5 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 7.41e-07 | 5 |
myotonic disease | 7.41e-07 | 5 |
muscle tissue disease | 7.41e-07 | 5 |
myopathy | 7.41e-07 | 5 |
muscular disease | 7.41e-07 | 5 |
myotonic dystrophy | 7.41e-07 | 5 |