FFCP PHASE1:Hg19::chr15:56207566..56207594,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4734 | |EntrezGene=4734 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7727 | |HGNC=7727 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_AK307541_5end | |association_with_transcript=0bp_to_AK307541_5end | ||
|cluster_id=chr15:56207566..56207594,- | |||
|description=CAGE_peak_2_at_NEDD4_5end | |description=CAGE_peak_2_at_NEDD4_5end | ||
|id=chr15:56207566..56207594,- | |id=chr15:56207566..56207594,- | ||
|ontology_enrichment_celltype=CL:0000055!5.11e-46!180;CL:0000057!2.00e-25!75;CL:0000680!4.32e-19!57;CL:0000056!4.32e-19!57;CL:0000355!4.32e-19!57;CL:0000187!2.31e-17!54;CL:0000548!6.09e-17!679;CL:0000004!6.09e-17!679;CL:0000255!6.09e-17!679;CL:0000012!2.39e-16!682;CL:0000183!3.22e-15!59;CL:0000393!3.68e-14!60;CL:0000211!3.68e-14!60;CL:0000222!1.47e-13!119;CL:0000192!2.71e-12!42;CL:0000514!2.71e-12!42;CL:0000144!4.76e-12!625;CL:0000220!3.86e-11!246;CL:0002321!1.00e-10!248;CL:0002371!1.68e-10!591;CL:0000359!1.89e-10!32;CL:0002620!5.90e-10!23;CL:0000003!8.46e-10!722;CL:0000077!1.25e-08!19;CL:0002334!6.33e-07!12 | |ontology_enrichment_celltype=CL:0000055!5.11e-46!180;CL:0000057!2.00e-25!75;CL:0000680!4.32e-19!57;CL:0000056!4.32e-19!57;CL:0000355!4.32e-19!57;CL:0000187!2.31e-17!54;CL:0000548!6.09e-17!679;CL:0000004!6.09e-17!679;CL:0000255!6.09e-17!679;CL:0000012!2.39e-16!682;CL:0000183!3.22e-15!59;CL:0000393!3.68e-14!60;CL:0000211!3.68e-14!60;CL:0000222!1.47e-13!119;CL:0000192!2.71e-12!42;CL:0000514!2.71e-12!42;CL:0000144!4.76e-12!625;CL:0000220!3.86e-11!246;CL:0002321!1.00e-10!248;CL:0002371!1.68e-10!591;CL:0000359!1.89e-10!32;CL:0002620!5.90e-10!23;CL:0000003!8.46e-10!722;CL:0000077!1.25e-08!19;CL:0002334!6.33e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000057;1.26e-11;73!CL:0000359;1.65e-11;32!CL:0000187;9.71e-11;55!CL:0002620;9.87e-11;23!CL:0000077;2.59e-09;19!CL:0000192;2.98e-09;43!CL:0000393;7.66e-08;61!CL:0000211;7.66e-08;61!CL:0002334;9.36e-08;12!CL:0002320;6.81e-07;188!CL:0002539;9.84e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.47e-28,76;CL:0000680,3.92e-20,58;CL:0000056,3.92e-20,58;CL:0000355,3.92e-20,58;CL:0000187,3.49e-18,55;CL:0000393,1.04e-14,61;CL:0000211,1.04e-14,61;CL:0000222,1.33e-14,121;CL:0000192,1.86e-12,43;CL:0000514,1.86e-12,43;CL:0000359,5.63e-12,32;CL:0002620,1.10e-10,23;CL:0000048,3.33e-10,427;CL:0000723,4.98e-10,433;CL:0002321,5.35e-10,250;CL:0000077,2.62e-09,19;CL:0000034,5.09e-09,441;CL:0002334,8.87e-08,12;CL:0002539,9.97e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000355;2.93e-11;58!CL:0000514;2.98e-09;43 | |||
|ontology_enrichment_disease=DOID:2394!3.44e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.32e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.10e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!5.51e-27!83;UBERON:0002329!5.51e-27!83;UBERON:0003077!5.51e-27!83;UBERON:0003059!5.51e-27!83;UBERON:0007282!5.51e-27!83;UBERON:0009618!5.51e-27!83;UBERON:0007285!5.51e-27!83;UBERON:0000486!7.31e-23!82;UBERON:0004290!7.91e-23!70;UBERON:0001134!6.93e-20!61;UBERON:0002036!6.93e-20!61;UBERON:0003082!6.93e-20!61;UBERON:0002385!1.76e-18!63;UBERON:0001015!1.76e-18!63;UBERON:0000383!1.76e-18!63;UBERON:0005256!7.56e-17!143;UBERON:0002100!6.55e-14!216;UBERON:0000475!6.98e-14!365;UBERON:0003104!2.28e-11!238;UBERON:0009142!2.28e-11!238;UBERON:0000481!1.95e-10!347;UBERON:0003102!2.23e-10!95;UBERON:0000490!7.79e-10!138;UBERON:0002097!1.22e-07!40;UBERON:0002199!1.42e-07!45;UBERON:0002416!1.42e-07!45;UBERON:0004573!1.57e-07!33;UBERON:0004571!1.57e-07!33;UBERON:0001637!7.67e-07!42;UBERON:0003509!7.67e-07!42;UBERON:0004572!7.67e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.33e-13;31!UBERON:0001015;1.33e-13;31!UBERON:0000383;1.33e-13;31!UBERON:0001134;3.36e-09;16!UBERON:0002036;3.36e-09;16!UBERON:0002204;6.52e-08;70!UBERON:0004573;7.96e-08;33!UBERON:0004571;7.96e-08;33!UBERON:0002097;4.82e-07;41!UBERON:0004237;9.84e-07;10!UBERON:0004695;9.84e-07;10!UBERON:0002111;9.84e-07;10!UBERON:0004178;9.84e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,1.38e-24,71;UBERON:0003059,1.38e-24,71;UBERON:0007282,1.38e-24,71;UBERON:0004290,1.38e-24,71;UBERON:0009618,1.38e-24,71;UBERON:0007524,2.43e-24,73;UBERON:0003077,6.49e-24,72;UBERON:0007285,6.49e-24,72;UBERON:0000486,6.60e-24,83;UBERON:0001134,3.41e-21,62;UBERON:0002036,3.41e-21,62;UBERON:0003082,3.41e-21,62;UBERON:0007503,2.75e-20,78;UBERON:0002385,6.77e-20,64;UBERON:0001015,6.77e-20,64;UBERON:0000383,6.77e-20,64;UBERON:0005256,6.74e-14,122;UBERON:0000490,6.07e-13,148;UBERON:0003102,1.18e-11,99;UBERON:0003104,2.26e-11,160;UBERON:0009142,2.26e-11,160;UBERON:0002100,1.91e-10,199;UBERON:0002199,7.58e-09,46;UBERON:0002416,7.58e-09,46;UBERON:0002097,9.43e-09,41;UBERON:0004573,2.01e-08,33;UBERON:0004571,2.01e-08,33;UBERON:0001637,5.75e-08,42;UBERON:0003509,5.75e-08,42;UBERON:0004572,5.75e-08,42;UBERON:0004237,9.97e-07,10;UBERON:0004695,9.97e-07,10;UBERON:0002111,9.97e-07,10;UBERON:0004178,9.97e-07,10 | |||
|phase1_expression=23.2548325466312,13.274232481241,14.518303621885,6.00439790118782,3.5756887554183,5.23403114460221,0,1.26343974685366,0,0.491467873003018,0,0.218441372130172,1.05506791291381,2.72285976512103,2.31978163009541,10.0848771967766,4.21886169616784,10.9546513558106,9.27072317701963,0.246242116153576,0.204000691244253,0.313454721478088,1.43117993565528,2.18999080116615,1.38096903554283,0,0,0,0,0,0,2.75826367343678,1.50602959389125,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,11.4019146149618,2.81297636055767,1.0843174571537,1.00267582127178,0.724232594804119,0.795285947051099,0.486634870302636,0.189069634328136,0.221729397462564,0.43917392846563,0,0,0,0,0,0,0,0,0,0.198762407366705,1.72046919021225,0,0,0,0,0,1.29208379584664,2.49036383880697,1.00416183829401,0,0,0,1.47065232138347,0,0,0,0,0,0,0,0,0,0,11.9273268406876,5.44511200157693,8.20936921041957,2.29469296599051,3.19201543978521,2.80338800071154,1.06748995729705,3.45334567784024,8.71390899119346,7.81321898004191,6.21155231831143,6.05429710579726,16.70910180992,3.51482147750695,3.1216007683032,3.99330275081114,2.24173020827702,6.6937664226946,6.151171885989,7.16299114181467,8.37032102145062,4.79053837515895,4.23635702820638,4.75201142912821,0.741800787835671,2.73048408581408,2.87447256726495,8.58514181165738,5.63033339423839,26.0440268555132,14.0472838681868,7.66219489497549,3.00476117813194,10.776057400202,10.9427677770206,2.77624605464138,3.81477422087211,7.50227740211006,7.9350447513598,3.60696756063881,2.04728541964749,9.62025093775217,10.0360115316035,7.06814567883521,6.90374239817245,1.13152239773168,11.005297368015,7.15339897416246,4.0694542154517,3.47869535693934,5.18217629122586,16.0610573417842,0,0,0,0.10366105501537,0,0,1.56449532329816,3.21620469096443,2.76269842704961,15.7885095530873,3.60939740834793,5.08719240171329,2.69735504124963,4.09718750801919,7.05881425487321,5.88274499049497,2.60997681022206,4.71909578560575,4.12065076763227,2.69323009862473,0,1.40241773803446,0.4115740113314,1.47008711385542,0,0,0,0,0,3.08822058537346,2.85350742062426,0,0,1.574003567695,1.3032332212413,1.03993478527958,2.88662684050547,1.39116485970092,1.05667824812239,0.288732895522148,0,0,0,0,0,0,0,3.74935335947108,2.01578553838631,4.25325291727159,1.52249488594842,2.03443756959773,0.766765358330422,0,0,0,0,0,0.190493682876507,0,0,0,0,0,0,0.672786506072164,0.43596006883328,5.64704800821315,8.53193324001333,0,3.381211010224,0,0,1.28603687131071,0,0.532844358032199,16.2994912770288,10.3098105024374,3.29296134712308,9.44634934451832,12.4387182059891,12.6712299669349,16.5791657382772,18.3022026306062,13.7962727831239,0,0,0,13.4189919075286,1.14861935834114,9.98458335285029,31.1279809335295,3.49309748335652,50.4951916336505,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,1.8403723757871,1.00034104211935,3.52644530809656,5.19927153827018,19.4487597788906,17.0318608236649,13.3541213091693,6.01892199455438,9.09630016223939,2.0694614258501,20.5909935545985,5.16233671916769,5.12613325361689,0.195801157462741,0,0,0,0,0.909382714338778,3.32870879020994,0,11.164851351845,30.3854707110364,5.3325417942284,3.97231362692673,8.18731598506726,4.02134802859019,2.96836132889982,8.01890407773809,4.43904313282818,11.4978018419333,11.9428518712233,3.02146983995894,0,0.200506470303285,0,3.67406234126742,12.0180170884433,3.40923478894503,0.451199612907412,1.46329140498388,0,0,0,0,0.340187410553031,0,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0.650756789328606,0,2.1060976908219,2.88783249722058,1.14853107599234,0.650060246036521,24.1025894766239,4.44685304143761,4.62145851343933,3.07007349452259,11.3025989437315,15.7907759956362,5.075584286998,8.18175623194569,7.30062692303246,2.14870389969272,2.49847087574638,6.12541019974004,0.2023155617111,9.29691098594571,10.7036197922418,3.485186350803,5.23657086299351,3.72614221221915,5.21959795245044,6.30102344953328,1.00187420719394,4.46590043231601,7.2767267685307,9.53150969619124,0.767693373934002,1.28381696410176,2.22742273548156,2.35484592059769,8.09426059124916,3.84351841630477,4.59468369148177,4.24583211303964,1.58510321173008,2.52755073743389,1.95053495635836,12.4293879711955,1.05650146756755,0.136499911407986,3.39373036688911,0,1.10273068709225,2.65375590096488,4.82295973779139,1.15755106853338,3.27947376023316,1.82619339266434,3.40805847909725,2.53526042279017,5.0193973271418,2.84922218938051,1.07001315444375,0.709522128141196,1.47775344708365,0,1.51789269506286,1.74967360122491,11.5466535270614,2.68120910214315,1.08890984861323,0.0941438007767792,0.43050537267123,1.68471475667626,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0.121360521749513,0,0,0,0,0.307160702099232,0,0,21.4825800694208,0,0,0,0,0,32.1123663056766,0,11.1974251558251,1.3480252672099,0,0,0,0,60.01397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| 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| ||
|short_description=p2@NEDD4 | |short_description=p2@NEDD4 | ||
}} | }} |
Latest revision as of 04:53, 18 September 2015
Short description: | p2@NEDD4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NEDD4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_AK307541_5end |
EntrezGene: | NEDD4 |
HGNC: | 7727 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.47e-28 | 76 |
muscle precursor cell | 3.92e-20 | 58 |
myoblast | 3.92e-20 | 58 |
multi-potent skeletal muscle stem cell | 3.92e-20 | 58 |
muscle cell | 3.49e-18 | 55 |
electrically responsive cell | 1.04e-14 | 61 |
electrically active cell | 1.04e-14 | 61 |
mesodermal cell | 1.33e-14 | 121 |
smooth muscle cell | 1.86e-12 | 43 |
smooth muscle myoblast | 1.86e-12 | 43 |
vascular associated smooth muscle cell | 5.63e-12 | 32 |
skin fibroblast | 1.10e-10 | 23 |
multi fate stem cell | 3.33e-10 | 427 |
somatic stem cell | 4.98e-10 | 433 |
embryonic cell | 5.35e-10 | 250 |
mesothelial cell | 2.62e-09 | 19 |
stem cell | 5.09e-09 | 441 |
preadipocyte | 8.87e-08 | 12 |
aortic smooth muscle cell | 9.97e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
somite | 1.38e-24 | 71 |
presomitic mesoderm | 1.38e-24 | 71 |
presumptive segmental plate | 1.38e-24 | 71 |
dermomyotome | 1.38e-24 | 71 |
trunk paraxial mesoderm | 1.38e-24 | 71 |
dense mesenchyme tissue | 2.43e-24 | 73 |
paraxial mesoderm | 6.49e-24 | 72 |
presumptive paraxial mesoderm | 6.49e-24 | 72 |
multilaminar epithelium | 6.60e-24 | 83 |
skeletal muscle tissue | 3.41e-21 | 62 |
striated muscle tissue | 3.41e-21 | 62 |
myotome | 3.41e-21 | 62 |
epithelial vesicle | 2.75e-20 | 78 |
muscle tissue | 6.77e-20 | 64 |
musculature | 6.77e-20 | 64 |
musculature of body | 6.77e-20 | 64 |
trunk mesenchyme | 6.74e-14 | 122 |
unilaminar epithelium | 6.07e-13 | 148 |
surface structure | 1.18e-11 | 99 |
mesenchyme | 2.26e-11 | 160 |
entire embryonic mesenchyme | 2.26e-11 | 160 |
trunk | 1.91e-10 | 199 |
integument | 7.58e-09 | 46 |
integumental system | 7.58e-09 | 46 |
skin of body | 9.43e-09 | 41 |
systemic artery | 2.01e-08 | 33 |
systemic arterial system | 2.01e-08 | 33 |
artery | 5.75e-08 | 42 |
arterial blood vessel | 5.75e-08 | 42 |
arterial system | 5.75e-08 | 42 |
blood vessel smooth muscle | 9.97e-07 | 10 |
arterial system smooth muscle | 9.97e-07 | 10 |
artery smooth muscle tissue | 9.97e-07 | 10 |
aorta smooth muscle tissue | 9.97e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.10e-07 | 14 |