FFCP PHASE1:Mm9::chr7:109118310..109118354,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=101706 | |EntrezGene=101706 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1700 | |||
|TSSclassifier=NA | |||
|UniProt=E9Q7G0,E9Q7Z9,Q80Y35 | |UniProt=E9Q7G0,E9Q7Z9,Q80Y35 | ||
|association_with_transcript=-2bp_to_ENSMUST00000084852,ENSMUST00000170458,NM_133947,uc009iqb.1_5end | |association_with_transcript=-2bp_to_ENSMUST00000084852,ENSMUST00000170458,NM_133947,uc009iqb.1_5end | ||
|cluster_id=chr7:109118310..109118354,+ | |||
|description=CAGE_peak_3_at_Numa1_5end | |description=CAGE_peak_3_at_Numa1_5end | ||
|id=chr7:109118310..109118354,+ | |id=chr7:109118310..109118354,+ | ||
|ontology_enrichment_celltype=CL:0000540!8.54e-09!33;CL:0000047!8.54e-09!33;CL:0000031!8.54e-09!33;CL:0000404!8.54e-09!33;CL:0000393!4.69e-07!39;CL:0000211!4.69e-07!39 | |ontology_enrichment_celltype=CL:0000540!8.54e-09!33;CL:0000047!8.54e-09!33;CL:0000031!8.54e-09!33;CL:0000404!8.54e-09!33;CL:0000393!4.69e-07!39;CL:0000211!4.69e-07!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,6.27e-09,33;CL:0000047,6.27e-09,33;CL:0000031,6.27e-09,33;CL:0000404,6.27e-09,33;CL:0000393,4.08e-07,39;CL:0000211,4.08e-07,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!2.50e-11!333;UBERON:0004121!2.00e-09!102;UBERON:0000924!2.00e-09!102;UBERON:0006601!2.00e-09!102;UBERON:0000033!3.56e-09!63;UBERON:0002346!1.11e-08!71;UBERON:0003075!1.11e-08!71;UBERON:0007284!1.11e-08!71;UBERON:0000922!1.63e-08!328;UBERON:0003056!2.57e-08!49;UBERON:0001017!1.66e-07!73;UBERON:0005743!1.66e-07!73;UBERON:0000020!4.07e-07!12;UBERON:0001032!4.07e-07!12;UBERON:0004456!4.07e-07!12;UBERON:0000970!8.72e-07!9;UBERON:0000019!8.72e-07!9;UBERON:0000047!8.72e-07!9;UBERON:0004088!8.72e-07!9;UBERON:0002104!8.72e-07!9;UBERON:0001456!8.72e-07!9;UBERON:0003072!8.72e-07!9;UBERON:0003071!8.72e-07!9;UBERON:0004128!8.72e-07!9 | |ontology_enrichment_uberon=UBERON:0000468!2.50e-11!333;UBERON:0004121!2.00e-09!102;UBERON:0000924!2.00e-09!102;UBERON:0006601!2.00e-09!102;UBERON:0000033!3.56e-09!63;UBERON:0002346!1.11e-08!71;UBERON:0003075!1.11e-08!71;UBERON:0007284!1.11e-08!71;UBERON:0000922!1.63e-08!328;UBERON:0003056!2.57e-08!49;UBERON:0001017!1.66e-07!73;UBERON:0005743!1.66e-07!73;UBERON:0000020!4.07e-07!12;UBERON:0001032!4.07e-07!12;UBERON:0004456!4.07e-07!12;UBERON:0000970!8.72e-07!9;UBERON:0000019!8.72e-07!9;UBERON:0000047!8.72e-07!9;UBERON:0004088!8.72e-07!9;UBERON:0002104!8.72e-07!9;UBERON:0001456!8.72e-07!9;UBERON:0003072!8.72e-07!9;UBERON:0003071!8.72e-07!9;UBERON:0004128!8.72e-07!9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.10e-09,95;UBERON:0000924,1.10e-09,95;UBERON:0006601,1.10e-09,95;UBERON:0002346,2.94e-09,64;UBERON:0003075,2.94e-09,64;UBERON:0007284,2.94e-09,64;UBERON:0010314,3.63e-09,92;UBERON:0010371,4.47e-09,73;UBERON:0003056,4.35e-08,49;UBERON:0000922,6.25e-08,320;UBERON:0001017,2.96e-07,73;UBERON:0000033,3.07e-07,13;UBERON:0000020,3.21e-07,12;UBERON:0001032,3.21e-07,12;UBERON:0004456,3.21e-07,12;UBERON:0000970,6.97e-07,9;UBERON:0000019,6.97e-07,9;UBERON:0000047,6.97e-07,9;UBERON:0010312,6.97e-07,9;UBERON:0004088,6.97e-07,9;UBERON:0002104,6.97e-07,9;UBERON:0001456,6.97e-07,9;UBERON:0003072,6.97e-07,9;UBERON:0004128,6.97e-07,9;UBERON:0003071,6.97e-07,9 | |||
|phase1_expression=12.8119077683835,0.348975407639361,0.909998478779072,0.60492842261366,0.500895729946347,1.17515490338323,0.700837921786577,0,0.703943610758334,1.17032263160997,0.171217968225505,0.0797721589953364,0,0.174840804837995,0,0,0,0,0,0,2.38121212422995,0.297872853602656,0.261199789138935,0,0,0,0.86152399231815,0.430942465371778,0.760093677825496,0.252030129759931,0.221730510655305,0,0,0,0.577703239502549,0.332469290716985,0.816677425049476,0,0,0,0,0,0,2.51793635951155,3.24406179902447,1.46837401729345,3.9119567217402,1.74420125104357,3.73466510648602,4.27745777963423,3.07970127575798,1.43752564364972,0.167782606057736,0.725362142011344,0,3.60163210450326,3.15186783932632,0.515672092277442,22.2548106945558,21.6886301501533,31.0577387718028,0,0.889294796111139,0,0,0,0.299600110518405,0.768436610643109,15.7608210708886,21.4659441947388,18.2982716375702,3.42781181284564,1.98781686856452,17.2712026893085,21.6610764501214,33.0918763179608,3.30347642998166,3.06449611404451,3.07213066512487,21.8931237632122,15.4614117688072,18.2319679694866,2.23346399201105,2.8138130501584,3.36156145108982,4.71405736757868,5.97961059356232,10.8111678578674,0.530083353332288,0.302286240427142,5.50742528533188,3.44169550792555,0,0.539703191637817,1.94932925234301,2.68816132258401,1.40444420131752,1.36344258062446,0.779358013808606,1.06001872353102,8.02807492727079,3.84979432242953,12.7402619853323,7.11066703153331,0.865964164044856,0.760079596425296,1.01104889002957,1.02765491747154,0.776813650941515,2.67195850316685,5.89850111004862,2.74018930480927,3.22861696158482,1.80867168663147,4.23319345688537,1.75933227861546,1.23597483867187,3.7595832799177,1.76922110389975,6.63244084784378,2.20841518460394,1.93950101254089,0,11.1256702864388,12.5668024088073,0.766371165625774,0.479260498023681,0,0.635351135365324,6.14141621559773,3.66000482254901,4.90051973240171,2.08589184230732,1.53429274398198,4.77912502486988,4.70499662896497,9.67473956578005,2.23932547098167,2.27450482590307,11.5743020737561,27.7156543510559,20.4612872945791,25.2086981727489,19.4409215008072,38.2365125230463,44.327347218558,33.170410494144,10.0894314588216,28.8861110530009,32.1480336285293,28.5040821145597,13.8093311429372,13.9023624612799,8.70630416305416,5.55611768301447,5.9710280045548,0.702213187313235,0.257347907114715,0,6.00664740352955,7.97388603935727,4.68161359798639,6.15536312521547,5.50939848892731,4.47374627373397,5.11574678450897,3.21928081679543,5.3712057488898,4.93679549740441,4.59668899421467,4.13450928683864,2.33919979880532,2.85415149878366,3.22095405024892,4.20579897128254,11.4224119741006,0,0.793351699990633,13.2238715331845,7.89604684325491,7.21657783403723,4.84040459096022,2.89091456998331,2.66315876557583,1.42358718463353,2.63518327558417,5.02670417600539,4.17808591286417,4.28920991662064,0.898819408654221,1.72910439899755,0.597423819763102,7.39704813717019,6.28366819353509,2.25415471346161,3.66572390121566,2.90928730751439,4.41855665309007,3.60448261608267,1.03327103585722,2.35498091762062,1.35736880313981,0.889357881261447,0.83422552858047,1.17935397067922,0.674586337154561,0.405720242777006,0.964708639009667,1.2731292589071,0.287696137450811,1.45921704097532,0.823684239564244,7.18841032636773,2.97712758134803,4.05648975048929,2.02063102357689,1.25578189465339,1.4473305640901,2.77129785249907,7.57965647081939,12.0594082567099,9.33597971763535,6.33663670378956,6.03022526790537,4.04674189506223,5.26860849216057,11.5073655197519,13.5093460685753,11.0023790373666,4.58817281204066,6.04397436530635,3.90552458170081,0,0,1.47529281905711,2.48343071674259,4.97706828962155,3.39913891117389,4.42624352517024,5.04941854408746,7.2566890465739,5.0757036758563,10.5557464889071,7.16906393857656,7.5751549188014,9.05844898524264,9.31064613852257,8.47541987942804,14.6256477840214,5.14114106274891,5.10984306749767,5.87616492101942,8.95878276444668,5.27904393512113,2.65490276679926,4.37005145078967,4.53485335447127,1.88605079755898,3.54362271456927,2.45948118355142,2.06742634534577,5.45300594216258,2.13898427030833,2.52829406348653,2.10837217149998,1.03135543248187,7.14923172082955,19.0864759673189,11.5129228566652,8.57348140126369,12.5911565886014,10.167022603318,8.72109809191241,14.0053876592716,1.64270195644597,0.847328283455281,2.42581237860458,1.81374878235628,7.75029248140347,3.67908842061751,3.10368094408155,1.64140899745061,1.1659233465194,3.8939313422207,0,6.81076664278634,3.1483069652851,0.753473828018764,0.136694227721025,0.457556346413045,1.01987057996313,1.53946597556024,0.829199842826543,0.954670618015114,16.449471666219,8.94605655358134,7.12835249423888,6.06356058441959,5.8957892211468,5.25970950900801,6.28166263512553,1.30877970992015,1.94422459937689,6.21339313086926,0.56369293868419,9.8680920389026,4.96375471371293,9.13920585217024,6.19967152693109,7.26511339610346,9.97536528488909,7.03103678157331,5.34782656571125,2.41584120826006,2.01621004380506,0.632022241256357,3.44632865993279,2.46506297195585,1.55904987573354,1.43221356533985,0.198681354781265,0.961563596159751,0.443068581523732,0.706765149637033,0.457240839929999,0.403304740547362,0.292373642219257,0.192423683280659,0.350630706544707,4.0811469050738,0.443971906748129,0.179427713218951,0.335769232728157,5.79568782096571,1.50145980360946,4.57879060668163,1.92931541171159,1.00314420807073,0.564751842617067,0.920650473014354,3.43737308063638,0.515559547031063,1.37016503954128,0.755393897389701,3.37511250115903,1.80128481289688,1.81256963593682,3.10656187051092,23.4559405540239,33.5180893656866,18.4392294214465,13.6139761558245,11.319110781911,7.53758384645058,9.33436256766784,6.59312183164461,9.94849549734627,7.58091635291392,8.11133759648767,8.11093267960128,7.21039607518095,6.33849008808206,6.31790158511746,6.66811167796303,7.3007125345259,7.90927803901191,6.59337441285291,8.68473628792944,7.20025430009372,6.74408063405482,8.58370283810355,8.43009216467505,7.52875043322645,7.69992931814256,7.50004688778368,10.7858581689516,6.11118512306378,11.2228454331548,7.11810108745045,7.38783617816726,4.50154147486658,5.73266312388074,8.68079749415136,13.4897712086491,6.78401664491684,8.59484216193193,13.390183244819,8.38247392654159,4.17362104116759 | |phase1_expression=12.8119077683835,0.348975407639361,0.909998478779072,0.60492842261366,0.500895729946347,1.17515490338323,0.700837921786577,0,0.703943610758334,1.17032263160997,0.171217968225505,0.0797721589953364,0,0.174840804837995,0,0,0,0,0,0,2.38121212422995,0.297872853602656,0.261199789138935,0,0,0,0.86152399231815,0.430942465371778,0.760093677825496,0.252030129759931,0.221730510655305,0,0,0,0.577703239502549,0.332469290716985,0.816677425049476,0,0,0,0,0,0,2.51793635951155,3.24406179902447,1.46837401729345,3.9119567217402,1.74420125104357,3.73466510648602,4.27745777963423,3.07970127575798,1.43752564364972,0.167782606057736,0.725362142011344,0,3.60163210450326,3.15186783932632,0.515672092277442,22.2548106945558,21.6886301501533,31.0577387718028,0,0.889294796111139,0,0,0,0.299600110518405,0.768436610643109,15.7608210708886,21.4659441947388,18.2982716375702,3.42781181284564,1.98781686856452,17.2712026893085,21.6610764501214,33.0918763179608,3.30347642998166,3.06449611404451,3.07213066512487,21.8931237632122,15.4614117688072,18.2319679694866,2.23346399201105,2.8138130501584,3.36156145108982,4.71405736757868,5.97961059356232,10.8111678578674,0.530083353332288,0.302286240427142,5.50742528533188,3.44169550792555,0,0.539703191637817,1.94932925234301,2.68816132258401,1.40444420131752,1.36344258062446,0.779358013808606,1.06001872353102,8.02807492727079,3.84979432242953,12.7402619853323,7.11066703153331,0.865964164044856,0.760079596425296,1.01104889002957,1.02765491747154,0.776813650941515,2.67195850316685,5.89850111004862,2.74018930480927,3.22861696158482,1.80867168663147,4.23319345688537,1.75933227861546,1.23597483867187,3.7595832799177,1.76922110389975,6.63244084784378,2.20841518460394,1.93950101254089,0,11.1256702864388,12.5668024088073,0.766371165625774,0.479260498023681,0,0.635351135365324,6.14141621559773,3.66000482254901,4.90051973240171,2.08589184230732,1.53429274398198,4.77912502486988,4.70499662896497,9.67473956578005,2.23932547098167,2.27450482590307,11.5743020737561,27.7156543510559,20.4612872945791,25.2086981727489,19.4409215008072,38.2365125230463,44.327347218558,33.170410494144,10.0894314588216,28.8861110530009,32.1480336285293,28.5040821145597,13.8093311429372,13.9023624612799,8.70630416305416,5.55611768301447,5.9710280045548,0.702213187313235,0.257347907114715,0,6.00664740352955,7.97388603935727,4.68161359798639,6.15536312521547,5.50939848892731,4.47374627373397,5.11574678450897,3.21928081679543,5.3712057488898,4.93679549740441,4.59668899421467,4.13450928683864,2.33919979880532,2.85415149878366,3.22095405024892,4.20579897128254,11.4224119741006,0,0.793351699990633,13.2238715331845,7.89604684325491,7.21657783403723,4.84040459096022,2.89091456998331,2.66315876557583,1.42358718463353,2.63518327558417,5.02670417600539,4.17808591286417,4.28920991662064,0.898819408654221,1.72910439899755,0.597423819763102,7.39704813717019,6.28366819353509,2.25415471346161,3.66572390121566,2.90928730751439,4.41855665309007,3.60448261608267,1.03327103585722,2.35498091762062,1.35736880313981,0.889357881261447,0.83422552858047,1.17935397067922,0.674586337154561,0.405720242777006,0.964708639009667,1.2731292589071,0.287696137450811,1.45921704097532,0.823684239564244,7.18841032636773,2.97712758134803,4.05648975048929,2.02063102357689,1.25578189465339,1.4473305640901,2.77129785249907,7.57965647081939,12.0594082567099,9.33597971763535,6.33663670378956,6.03022526790537,4.04674189506223,5.26860849216057,11.5073655197519,13.5093460685753,11.0023790373666,4.58817281204066,6.04397436530635,3.90552458170081,0,0,1.47529281905711,2.48343071674259,4.97706828962155,3.39913891117389,4.42624352517024,5.04941854408746,7.2566890465739,5.0757036758563,10.5557464889071,7.16906393857656,7.5751549188014,9.05844898524264,9.31064613852257,8.47541987942804,14.6256477840214,5.14114106274891,5.10984306749767,5.87616492101942,8.95878276444668,5.27904393512113,2.65490276679926,4.37005145078967,4.53485335447127,1.88605079755898,3.54362271456927,2.45948118355142,2.06742634534577,5.45300594216258,2.13898427030833,2.52829406348653,2.10837217149998,1.03135543248187,7.14923172082955,19.0864759673189,11.5129228566652,8.57348140126369,12.5911565886014,10.167022603318,8.72109809191241,14.0053876592716,1.64270195644597,0.847328283455281,2.42581237860458,1.81374878235628,7.75029248140347,3.67908842061751,3.10368094408155,1.64140899745061,1.1659233465194,3.8939313422207,0,6.81076664278634,3.1483069652851,0.753473828018764,0.136694227721025,0.457556346413045,1.01987057996313,1.53946597556024,0.829199842826543,0.954670618015114,16.449471666219,8.94605655358134,7.12835249423888,6.06356058441959,5.8957892211468,5.25970950900801,6.28166263512553,1.30877970992015,1.94422459937689,6.21339313086926,0.56369293868419,9.8680920389026,4.96375471371293,9.13920585217024,6.19967152693109,7.26511339610346,9.97536528488909,7.03103678157331,5.34782656571125,2.41584120826006,2.01621004380506,0.632022241256357,3.44632865993279,2.46506297195585,1.55904987573354,1.43221356533985,0.198681354781265,0.961563596159751,0.443068581523732,0.706765149637033,0.457240839929999,0.403304740547362,0.292373642219257,0.192423683280659,0.350630706544707,4.0811469050738,0.443971906748129,0.179427713218951,0.335769232728157,5.79568782096571,1.50145980360946,4.57879060668163,1.92931541171159,1.00314420807073,0.564751842617067,0.920650473014354,3.43737308063638,0.515559547031063,1.37016503954128,0.755393897389701,3.37511250115903,1.80128481289688,1.81256963593682,3.10656187051092,23.4559405540239,33.5180893656866,18.4392294214465,13.6139761558245,11.319110781911,7.53758384645058,9.33436256766784,6.59312183164461,9.94849549734627,7.58091635291392,8.11133759648767,8.11093267960128,7.21039607518095,6.33849008808206,6.31790158511746,6.66811167796303,7.3007125345259,7.90927803901191,6.59337441285291,8.68473628792944,7.20025430009372,6.74408063405482,8.58370283810355,8.43009216467505,7.52875043322645,7.69992931814256,7.50004688778368,10.7858581689516,6.11118512306378,11.2228454331548,7.11810108745045,7.38783617816726,4.50154147486658,5.73266312388074,8.68079749415136,13.4897712086491,6.78401664491684,8.59484216193193,13.390183244819,8.38247392654159,4.17362104116759 | ||
|short_description=p3@Numa1 | |short_description=p3@Numa1 | ||
}} | }} |
Latest revision as of 15:43, 25 September 2015
Short description: | p3@Numa1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Numa1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1700 |
Association with transcript: | -2bp_to_ENSMUST00000084852, ENSMUST00000170458, NM_133947, uc009iqb.1_5end |
EntrezGene: | Numa1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 6.27e-09 | 33 |
neuronal stem cell | 6.27e-09 | 33 |
neuroblast | 6.27e-09 | 33 |
electrically signaling cell | 6.27e-09 | 33 |
electrically responsive cell | 4.08e-07 | 39 |
electrically active cell | 4.08e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.10e-09 | 95 |
ectoderm | 1.10e-09 | 95 |
presumptive ectoderm | 1.10e-09 | 95 |
neurectoderm | 2.94e-09 | 64 |
neural plate | 2.94e-09 | 64 |
presumptive neural plate | 2.94e-09 | 64 |
structure with developmental contribution from neural crest | 3.63e-09 | 92 |
ecto-epithelium | 4.47e-09 | 73 |
pre-chordal neural plate | 4.35e-08 | 49 |
embryo | 6.25e-08 | 320 |
central nervous system | 2.96e-07 | 73 |
head | 3.07e-07 | 13 |
sense organ | 3.21e-07 | 12 |
sensory system | 3.21e-07 | 12 |
entire sense organ system | 3.21e-07 | 12 |
eye | 6.97e-07 | 9 |
camera-type eye | 6.97e-07 | 9 |
simple eye | 6.97e-07 | 9 |
immature eye | 6.97e-07 | 9 |
ocular region | 6.97e-07 | 9 |
visual system | 6.97e-07 | 9 |
face | 6.97e-07 | 9 |
optic cup | 6.97e-07 | 9 |
optic vesicle | 6.97e-07 | 9 |
eye primordium | 6.97e-07 | 9 |