FFCP PHASE1:Hg19::chr14:55590646..55590689,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3958 | |EntrezGene=3958 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6563 | |HGNC=6563 | ||
|TSSclassifier=strong | |||
|UniProt=G3V407 | |UniProt=G3V407 | ||
|association_with_transcript=-138bp_to_ENST00000553493_5end | |association_with_transcript=-138bp_to_ENST00000553493_5end | ||
|cluster_id=chr14:55590646..55590689,+ | |||
|coexpression_cluster_id=C54 | |||
|description=CAGE_peak_2_at_LGALS3_5end | |description=CAGE_peak_2_at_LGALS3_5end | ||
|id=chr14:55590646..55590689,+ | |id=chr14:55590646..55590689,+ | ||
|ontology_enrichment_celltype=CL:0002009!3.66e-46!65;CL:0002194!6.98e-45!63;CL:0000576!6.98e-45!63;CL:0000040!6.98e-45!63;CL:0000559!6.98e-45!63;CL:0000557!7.82e-44!71;CL:0000766!2.24e-42!76;CL:0000839!8.52e-42!70;CL:0002057!1.20e-29!42;CL:0000860!3.21e-27!45;CL:0000763!3.44e-27!112;CL:0000049!3.44e-27!112;CL:0000738!3.21e-22!140;CL:0002087!5.51e-22!119;CL:0002031!8.84e-21!124;CL:0000037!4.49e-16!172;CL:0000566!4.49e-16!172;CL:0002032!4.08e-15!165;CL:0000837!4.08e-15!165;CL:0000988!1.31e-14!182;CL:0002619!1.21e-08!3;CL:0000840!2.02e-08!5;CL:0001029!2.02e-08!5;CL:0000235!7.11e-07!10 | |ontology_enrichment_celltype=CL:0002009!3.66e-46!65;CL:0002194!6.98e-45!63;CL:0000576!6.98e-45!63;CL:0000040!6.98e-45!63;CL:0000559!6.98e-45!63;CL:0000557!7.82e-44!71;CL:0000766!2.24e-42!76;CL:0000839!8.52e-42!70;CL:0002057!1.20e-29!42;CL:0000860!3.21e-27!45;CL:0000763!3.44e-27!112;CL:0000049!3.44e-27!112;CL:0000738!3.21e-22!140;CL:0002087!5.51e-22!119;CL:0002031!8.84e-21!124;CL:0000037!4.49e-16!172;CL:0000566!4.49e-16!172;CL:0002032!4.08e-15!165;CL:0000837!4.08e-15!165;CL:0000988!1.31e-14!182;CL:0002619!1.21e-08!3;CL:0000840!2.02e-08!5;CL:0001029!2.02e-08!5;CL:0000235!7.11e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000840;1.81e-26;5!CL:0000990;9.59e-18;8!CL:0000235;7.22e-15;6!CL:0000451;1.46e-14;10!CL:0002577;1.65e-13;3!CL:0000349;3.58e-12;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000840,1.75e-26,5;CL:0001029,1.75e-26,5;CL:0000990,9.39e-18,8;CL:0000235,6.73e-15,6;CL:0000451,1.44e-14,10;CL:0002577,1.41e-13,3;CL:0000349,3.10e-12,19;CL:0002009,2.70e-11,61;CL:0000557,3.45e-10,67;CL:0002194,3.06e-09,59;CL:0000576,3.06e-09,59;CL:0000040,3.06e-09,59;CL:0000559,3.06e-09,59;CL:0000839,3.59e-08,66;CL:0000766,2.04e-07,72 | |||
|ontology_enrichment_development_v019=UBERON:0000358;6.76e-11;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!9.13e-38!80;UBERON:0001474!2.01e-34!86;UBERON:0002390!1.17e-32!102;UBERON:0003061!1.17e-32!102;UBERON:0002193!2.26e-30!112;UBERON:0004765!1.65e-29!101;UBERON:0001434!1.65e-29!101;UBERON:0002405!4.69e-26!115;UBERON:0003081!1.92e-20!216;UBERON:0002204!4.79e-16!167;UBERON:0005631!1.32e-14!14;UBERON:0000158!1.32e-14!14;UBERON:0003124!9.84e-10!7;UBERON:0000478!1.09e-09!24;UBERON:0000926!2.08e-09!448;UBERON:0004120!2.08e-09!448;UBERON:0006603!2.08e-09!448;UBERON:0000062!2.78e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;1.27e-13;24!UBERON:0002171;6.76e-11;1!UBERON:0006518;6.76e-11;1!UBERON:0008949;6.76e-11;1!UBERON:0000101;6.76e-11;1!UBERON:0002167;6.76e-11;1!UBERON:0001987;2.31e-10;4!UBERON:0005631;6.37e-09;10!UBERON:0000158;6.37e-09;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.25e-16,14;UBERON:0000158,1.25e-16,14;UBERON:0000478,1.13e-13,24;UBERON:0003124,1.26e-12,7;UBERON:0002171,6.14e-11,1;UBERON:0006518,6.14e-11,1;UBERON:0008949,6.14e-11,1;UBERON:0000101,6.14e-11,1;UBERON:0002167,6.14e-11,1;UBERON:0001987,2.05e-10,4;UBERON:0004340,2.05e-10,4;UBERON:0003081,2.21e-09,203;UBERON:0002371,7.48e-09,76;UBERON:0001474,4.02e-08,82;UBERON:0004765,2.68e-07,90;UBERON:0002405,5.02e-07,93 | |||
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| ||
|short_description=p2@LGALS3 | |short_description=p2@LGALS3 | ||
}} | }} |
Latest revision as of 15:51, 24 September 2015
Short description: | p2@LGALS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LGALS3_5end |
Coexpression cluster: | C54_Dendritic_Macrophage_Monocytederived_CD14_leiomyoma_adipose_immature |
Association with transcript: | -138bp_to_ENST00000553493_5end |
EntrezGene: | LGALS3 |
HGNC: | 6563 |
UniProt: | G3V407 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
immature conventional dendritic cell | 1.75e-26 | 5 |
common dendritic progenitor | 1.75e-26 | 5 |
conventional dendritic cell | 9.39e-18 | 8 |
macrophage | 6.73e-15 | 6 |
dendritic cell | 1.44e-14 | 10 |
placental epithelial cell | 1.41e-13 | 3 |
extraembryonic cell | 3.10e-12 | 19 |
macrophage dendritic cell progenitor | 2.70e-11 | 61 |
granulocyte monocyte progenitor cell | 3.45e-10 | 67 |
monopoietic cell | 3.06e-09 | 59 |
monocyte | 3.06e-09 | 59 |
monoblast | 3.06e-09 | 59 |
promonocyte | 3.06e-09 | 59 |
myeloid lineage restricted progenitor cell | 3.59e-08 | 66 |
myeloid leukocyte | 2.04e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.25e-16 | 14 |
membranous layer | 1.25e-16 | 14 |
extraembryonic structure | 1.13e-13 | 24 |
chorion | 1.26e-12 | 7 |
lower lobe of right lung | 6.14e-11 | 1 |
right lung lobe | 6.14e-11 | 1 |
lower lobe of lung | 6.14e-11 | 1 |
lobe of lung | 6.14e-11 | 1 |
right lung | 6.14e-11 | 1 |
placenta | 2.05e-10 | 4 |
allantois | 2.05e-10 | 4 |
lateral plate mesoderm | 2.21e-09 | 203 |
bone marrow | 7.48e-09 | 76 |
bone element | 4.02e-08 | 82 |
skeletal element | 2.68e-07 | 90 |
immune system | 5.02e-07 | 93 |