FFCP PHASE1:Hg19::chr10:54214938..54214951,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=80bp_to_ENST00000435813,uc001jjs.2_5end | |association_with_transcript=80bp_to_ENST00000435813,uc001jjs.2_5end | ||
|cluster_id=chr10:54214938..54214951,- | |||
|coexpression_cluster_id=C1315 | |||
|description=CAGE_peak_4_at_ENST00000435813_5end,CAGE_peak_4_at_uc001jjs.2_5end | |description=CAGE_peak_4_at_ENST00000435813_5end,CAGE_peak_4_at_uc001jjs.2_5end | ||
|id=chr10:54214938..54214951,- | |id=chr10:54214938..54214951,- | ||
|ontology_enrichment_celltype=CL:0002076!3.10e-16!43;CL:0002251!1.34e-14!21;CL:0000223!3.44e-14!59;CL:0000066!8.56e-12!254;CL:0000076!2.00e-10!62;CL:0002231!2.36e-10!3;CL:0000243!1.15e-09!15;CL:0000125!1.15e-09!15;CL:0000030!1.15e-09!15;CL:0000339!1.15e-09!15;CL:0000095!1.57e-08!17;CL:0000123!1.57e-08!17 | |ontology_enrichment_celltype=CL:0002076!3.10e-16!43;CL:0002251!1.34e-14!21;CL:0000223!3.44e-14!59;CL:0000066!8.56e-12!254;CL:0000076!2.00e-10!62;CL:0002231!2.36e-10!3;CL:0000243!1.15e-09!15;CL:0000125!1.15e-09!15;CL:0000030!1.15e-09!15;CL:0000339!1.15e-09!15;CL:0000095!1.57e-08!17;CL:0000123!1.57e-08!17 | ||
|ontology_enrichment_celltype_v019=CL:0000243;3.92e-21;15!CL:0000125;3.92e-21;15!CL:0000095;7.14e-19;17!CL:0002573;1.73e-14;2!CL:0002319;3.61e-13;25!CL:0002563;7.53e-11;4!CL:0002251;4.34e-08;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000243,3.53e-21,15;CL:0000125,3.53e-21,15;CL:0000030,3.53e-21,15;CL:0000339,3.53e-21,15;CL:0000095,6.51e-19,17;CL:0000123,6.51e-19,17;CL:0002573,1.62e-14,2;CL:0002319,3.39e-13,25;CL:0002563,8.96e-11,4;CL:0000333,4.00e-08,41;CL:0002251,4.06e-08,20;CL:0000076,5.48e-07,63 | |||
|ontology_enrichment_development_v019=CL:0000339;3.92e-21;15!UBERON:0006238;4.33e-15;10 | |||
|ontology_enrichment_disease=DOID:1749!1.35e-33!14;DOID:305!1.04e-12!106;DOID:14566!1.27e-12!239;DOID:162!3.68e-11!235;DOID:0050687!9.61e-10!143;DOID:4074!3.37e-08!2;DOID:4905!3.37e-08!2;DOID:3498!3.37e-08!2 | |ontology_enrichment_disease=DOID:1749!1.35e-33!14;DOID:305!1.04e-12!106;DOID:14566!1.27e-12!239;DOID:162!3.68e-11!235;DOID:0050687!9.61e-10!143;DOID:4074!3.37e-08!2;DOID:4905!3.37e-08!2;DOID:3498!3.37e-08!2 | ||
|ontology_enrichment_disease_v019=DOID:1749;8.53e-25;14!DOID:3093;7.49e-14;11!DOID:3111;1.52e-11;1!DOID:3603;1.52e-11;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,7.36e-25,14;DOID:3093,7.01e-14,11;DOID:3111,1.60e-11,1;DOID:3603,1.60e-11,1;DOID:14566,7.57e-11,239;DOID:162,2.22e-08,235;DOID:305,6.95e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0000344!2.72e-22!12;UBERON:0003729!1.95e-17!5;UBERON:0003343!8.48e-15!4;UBERON:0004785!8.48e-15!4;UBERON:0000161!1.85e-09!35;UBERON:0003102!4.19e-09!95;UBERON:0001046!1.14e-07!19;UBERON:0003350!7.27e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000344;2.78e-12;20!UBERON:0001242;7.53e-11;4!UBERON:0001262;7.53e-11;4!UBERON:0004786;7.53e-11;4!UBERON:0004808;7.53e-11;4!UBERON:0001277;7.53e-11;4!UBERON:0003343;9.89e-11;4!UBERON:0004785;9.89e-11;4!UBERON:0000974;1.92e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,2.59e-12,20;UBERON:0003343,6.99e-11,4;UBERON:0004785,6.99e-11,4;UBERON:0001242,8.96e-11,4;UBERON:0001262,8.96e-11,4;UBERON:0004786,8.96e-11,4;UBERON:0004808,8.96e-11,4;UBERON:0001277,8.96e-11,4 | |||
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| ||
|short_description=p4@ENST00000435813,p4@uc001jjs.2 | |short_description=p4@ENST00000435813,p4@uc001jjs.2 | ||
}} | }} |
Latest revision as of 14:10, 23 July 2015
Short description: | p4@ENST00000435813, p4@uc001jjs.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ENST00000435813_5end, CAGE_peak_4_at_uc001jjs.2_5end |
Coexpression cluster: | C1315_mucinous_astrocytoma_malignant_glioblastoma_oral_gastric_medulloblastoma |
Association with transcript: | 80bp_to_ENST00000435813, uc001jjs.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 3.53e-21 | 15 |
glial cell | 3.53e-21 | 15 |
glioblast | 3.53e-21 | 15 |
glioblast (sensu Vertebrata) | 3.53e-21 | 15 |
neuron associated cell | 6.51e-19 | 17 |
neuron associated cell (sensu Vertebrata) | 6.51e-19 | 17 |
Schwann cell | 1.62e-14 | 2 |
neural cell | 3.39e-13 | 25 |
intestinal epithelial cell | 8.96e-11 | 4 |
migratory neural crest cell | 4.00e-08 | 41 |
epithelial cell of alimentary canal | 4.06e-08 | 20 |
squamous epithelial cell | 5.48e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
mucosa | 2.59e-12 | 20 |
mucosa of oral region | 6.99e-11 | 4 |
respiratory system mucosa | 6.99e-11 | 4 |
intestinal mucosa | 8.96e-11 | 4 |
wall of intestine | 8.96e-11 | 4 |
gastrointestinal system mucosa | 8.96e-11 | 4 |
gastrointestinal system epithelium | 8.96e-11 | 4 |
intestinal epithelium | 8.96e-11 | 4 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 7.36e-25 | 14 |
nervous system cancer | 7.01e-14 | 11 |
cystadenocarcinoma | 1.60e-11 | 1 |
mucinous cystadenocarcinoma | 1.60e-11 | 1 |
disease of cellular proliferation | 7.57e-11 | 239 |
cancer | 2.22e-08 | 235 |
carcinoma | 6.95e-08 | 106 |