FFCP PHASE1:Hg19::chr13:51913997..51914020,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:51913997..51914020,+ | |||
|coexpression_cluster_id=C753 | |||
|description=CAGE_peak_at_chr13:51913997..51914020,+ | |description=CAGE_peak_at_chr13:51913997..51914020,+ | ||
|id=chr13:51913997..51914020,+ | |id=chr13:51913997..51914020,+ | ||
|ontology_enrichment_celltype=CL:0002586!8.37e-39!3;CL:0000149!2.06e-29!4;CL:0000147!3.72e-09!14 | |ontology_enrichment_celltype=CL:0002586!8.37e-39!3;CL:0000149!2.06e-29!4;CL:0000147!3.72e-09!14 | ||
|ontology_enrichment_celltype_v019=CL:0002586;2.39e-66;3!CL:0000149;3.10e-50;4!CL:0000147;1.43e-15;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,2.39e-66,3;CL:0000149,3.10e-50,4;CL:0000147,1.43e-15,14 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000966!2.30e-51!5;UBERON:0005388!2.30e-51!5;UBERON:0001802!2.30e-51!5;UBERON:0001781!8.37e-39!3;UBERON:0001782!8.37e-39!3;UBERON:0005424!8.37e-39!3;UBERON:0002146!2.37e-29!1;UBERON:0005623!2.37e-29!1;UBERON:0000019!3.62e-14!19;UBERON:0000047!3.62e-14!19;UBERON:0004088!3.62e-14!19;UBERON:0003072!3.62e-14!19;UBERON:0003071!3.62e-14!19;UBERON:0004128!3.62e-14!19;UBERON:0000970!1.69e-13!20;UBERON:0002104!6.85e-13!21;UBERON:0001456!6.85e-13!21;UBERON:0000020!7.80e-12!23;UBERON:0007625!2.18e-11!11;UBERON:0001032!2.27e-11!24;UBERON:0004456!2.27e-11!24;UBERON:0001896!7.42e-11!3;UBERON:0005290!7.42e-11!3;UBERON:0010096!7.42e-11!3;UBERON:0003978!9.90e-11!3;UBERON:0009751!9.90e-11!3;UBERON:0000946!9.90e-11!3;UBERON:0002523!9.90e-11!3;UBERON:0005983!9.90e-11!3;UBERON:0002165!9.90e-11!3;UBERON:0002062!9.90e-11!3;UBERON:0007280!9.90e-11!3;UBERON:0005085!1.57e-09!29;UBERON:0003075!1.75e-08!86;UBERON:0007284!1.75e-08!86;UBERON:0005743!2.13e-08!86;UBERON:0002346!4.02e-08!90;UBERON:0000073!1.22e-07!94;UBERON:0001016!1.22e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0001781;2.39e-66;3!UBERON:0001782;2.39e-66;3!UBERON:0000966;1.48e-40;5!UBERON:0005388;1.48e-40;5!UBERON:0001802;1.48e-40;5!UBERON:0007625;2.25e-19;11!UBERON:0000019;6.95e-12;19!UBERON:0000047;6.95e-12;19!UBERON:0004088;6.95e-12;19!UBERON:0010230;6.95e-12;19!UBERON:0000970;2.29e-11;20!UBERON:0002104;6.74e-11;21!UBERON:0001456;6.74e-11;21!UBERON:0000020;4.42e-10;23!UBERON:0001032;1.01e-09;24!UBERON:0004456;1.01e-09;24!UBERON:0010371;4.53e-08;31!UBERON:0000033;2.32e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,2.39e-66,3;UBERON:0005424,2.39e-66,3;UBERON:0001781,3.10e-50,4;UBERON:0000966,4.27e-34,6;UBERON:0005388,4.27e-34,6;UBERON:0001802,4.27e-34,6;UBERON:0007625,2.25e-19,11;UBERON:0000019,2.29e-11,20;UBERON:0000047,2.29e-11,20;UBERON:0010312,2.29e-11,20;UBERON:0004088,2.29e-11,20;UBERON:0010230,2.29e-11,20;UBERON:0003072,2.29e-11,20;UBERON:0004128,2.29e-11,20;UBERON:0003071,2.29e-11,20;UBERON:0000970,6.74e-11,21;UBERON:0002104,6.74e-11,21;UBERON:0001456,1.80e-10,22;UBERON:0000020,1.01e-09,24;UBERON:0001032,1.01e-09,24;UBERON:0004456,1.01e-09,24;UBERON:0005085,7.41e-08,31 | |||
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|short_description=p@chr13:51913997..51914020,+ | |short_description=p@chr13:51913997..51914020,+ | ||
}} | }} |
Latest revision as of 16:44, 24 July 2015
Short description: | p@chr13:51913997..51914020, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:51913997..51914020, + |
Coexpression cluster: | C753_Retinal_retina_eye_kidney_caudate_corpus_putamen |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 2.39e-66 | 3 |
visual pigment cell | 3.10e-50 | 4 |
pigment cell | 1.43e-15 | 14 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 2.39e-66 | 3 |
presumptive retinal pigmented epithelium | 2.39e-66 | 3 |
layer of retina | 3.10e-50 | 4 |
retina | 4.27e-34 | 6 |
photoreceptor array | 4.27e-34 | 6 |
posterior segment of eyeball | 4.27e-34 | 6 |
pigment epithelium of eye | 2.25e-19 | 11 |
camera-type eye | 2.29e-11 | 20 |
simple eye | 2.29e-11 | 20 |
immature eye | 2.29e-11 | 20 |
ocular region | 2.29e-11 | 20 |
eyeball of camera-type eye | 2.29e-11 | 20 |
optic cup | 2.29e-11 | 20 |
optic vesicle | 2.29e-11 | 20 |
eye primordium | 2.29e-11 | 20 |
eye | 6.74e-11 | 21 |
visual system | 6.74e-11 | 21 |
face | 1.80e-10 | 22 |
sense organ | 1.01e-09 | 24 |
sensory system | 1.01e-09 | 24 |
entire sense organ system | 1.01e-09 | 24 |
ectodermal placode | 7.41e-08 | 31 |