FFCP PHASE1:Mm9::chr3:54719907..54719943,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=329641 | |EntrezGene=329641 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=708 | |||
|TSSclassifier=NA | |||
|UniProt=Q8CD78 | |UniProt=Q8CD78 | ||
|association_with_transcript=-98bp_to_ENSMUST00000070342,NM_177854,uc008pfx.2_5end | |association_with_transcript=-98bp_to_ENSMUST00000070342,NM_177854,uc008pfx.2_5end | ||
|cluster_id=chr3:54719907..54719943,- | |||
|description=CAGE_peak_2_at_6030405A18Rik_5end | |description=CAGE_peak_2_at_6030405A18Rik_5end | ||
|id=chr3:54719907..54719943,- | |id=chr3:54719907..54719943,- | ||
|ontology_enrichment_celltype=CL:0000117!8.67e-17!23;CL:0000337!8.67e-17!23;CL:0000540!1.11e-09!33;CL:0000047!1.11e-09!33;CL:0000031!1.11e-09!33;CL:0000404!1.11e-09!33;CL:0000221!2.50e-07!44;CL:0000133!2.50e-07!44;CL:0002319!5.49e-07!43;CL:0000393!7.36e-07!39;CL:0000211!7.36e-07!39 | |ontology_enrichment_celltype=CL:0000117!8.67e-17!23;CL:0000337!8.67e-17!23;CL:0000540!1.11e-09!33;CL:0000047!1.11e-09!33;CL:0000031!1.11e-09!33;CL:0000404!1.11e-09!33;CL:0000221!2.50e-07!44;CL:0000133!2.50e-07!44;CL:0002319!5.49e-07!43;CL:0000393!7.36e-07!39;CL:0000211!7.36e-07!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.86e-26,23;CL:0000337,2.86e-26,23;CL:0000540,5.66e-17,33;CL:0000047,5.66e-17,33;CL:0000031,5.66e-17,33;CL:0000404,5.66e-17,33;CL:0000393,1.07e-13,39;CL:0000211,1.07e-13,39;CL:0002319,5.02e-12,43;CL:0000221,1.17e-11,44;CL:0000133,1.17e-11,44;CL:0002610,3.13e-08,3;CL:0002614,6.56e-08,3;CL:0000120,8.78e-07,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.99e-26!52;UBERON:0005068!2.99e-26!52;UBERON:0006241!2.99e-26!52;UBERON:0007135!2.99e-26!52;UBERON:0000955!9.91e-26!50;UBERON:0006238!9.91e-26!50;UBERON:0002616!6.08e-25!49;UBERON:0002020!2.97e-23!34;UBERON:0000073!3.57e-23!75;UBERON:0001016!3.57e-23!75;UBERON:0000033!8.29e-23!63;UBERON:0001017!8.81e-23!73;UBERON:0005743!8.81e-23!73;UBERON:0003080!6.23e-22!40;UBERON:0002780!4.56e-21!39;UBERON:0001890!4.56e-21!39;UBERON:0006240!4.56e-21!39;UBERON:0002791!1.29e-19!29;UBERON:0003528!1.29e-19!29;UBERON:0001893!1.29e-19!29;UBERON:0003056!1.99e-19!49;UBERON:0002346!2.59e-19!71;UBERON:0003075!2.59e-19!71;UBERON:0007284!2.59e-19!71;UBERON:0004121!1.07e-16!102;UBERON:0000924!1.07e-16!102;UBERON:0006601!1.07e-16!102;UBERON:0000956!1.29e-13!21;UBERON:0001869!1.29e-13!21;UBERON:0000203!1.29e-13!21;UBERON:0007811!5.53e-12!86;UBERON:0002619!6.87e-12!17;UBERON:0000153!3.87e-11!94;UBERON:0002021!1.40e-09!10;UBERON:0000411!1.40e-09!10;UBERON:0001950!1.40e-09!10;UBERON:0000025!5.96e-09!114;UBERON:0004111!3.89e-08!122;UBERON:0002420!3.16e-07!8;UBERON:0007245!3.16e-07!8;UBERON:0010009!3.16e-07!8;UBERON:0010011!3.16e-07!8;UBERON:0000454!3.16e-07!8 | |ontology_enrichment_uberon=UBERON:0001049!2.99e-26!52;UBERON:0005068!2.99e-26!52;UBERON:0006241!2.99e-26!52;UBERON:0007135!2.99e-26!52;UBERON:0000955!9.91e-26!50;UBERON:0006238!9.91e-26!50;UBERON:0002616!6.08e-25!49;UBERON:0002020!2.97e-23!34;UBERON:0000073!3.57e-23!75;UBERON:0001016!3.57e-23!75;UBERON:0000033!8.29e-23!63;UBERON:0001017!8.81e-23!73;UBERON:0005743!8.81e-23!73;UBERON:0003080!6.23e-22!40;UBERON:0002780!4.56e-21!39;UBERON:0001890!4.56e-21!39;UBERON:0006240!4.56e-21!39;UBERON:0002791!1.29e-19!29;UBERON:0003528!1.29e-19!29;UBERON:0001893!1.29e-19!29;UBERON:0003056!1.99e-19!49;UBERON:0002346!2.59e-19!71;UBERON:0003075!2.59e-19!71;UBERON:0007284!2.59e-19!71;UBERON:0004121!1.07e-16!102;UBERON:0000924!1.07e-16!102;UBERON:0006601!1.07e-16!102;UBERON:0000956!1.29e-13!21;UBERON:0001869!1.29e-13!21;UBERON:0000203!1.29e-13!21;UBERON:0007811!5.53e-12!86;UBERON:0002619!6.87e-12!17;UBERON:0000153!3.87e-11!94;UBERON:0002021!1.40e-09!10;UBERON:0000411!1.40e-09!10;UBERON:0001950!1.40e-09!10;UBERON:0000025!5.96e-09!114;UBERON:0004111!3.89e-08!122;UBERON:0002420!3.16e-07!8;UBERON:0007245!3.16e-07!8;UBERON:0010009!3.16e-07!8;UBERON:0010011!3.16e-07!8;UBERON:0000454!3.16e-07!8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.74e-44,54;UBERON:0001017,3.71e-39,73;UBERON:0002020,1.59e-38,34;UBERON:0001016,6.76e-38,75;UBERON:0001049,5.63e-37,52;UBERON:0005068,5.63e-37,52;UBERON:0006241,5.63e-37,52;UBERON:0007135,5.63e-37,52;UBERON:0000955,1.89e-31,47;UBERON:0006238,1.89e-31,47;UBERON:0003528,5.53e-30,29;UBERON:0002791,5.53e-30,29;UBERON:0001893,5.53e-30,29;UBERON:0003080,7.61e-30,40;UBERON:0002616,7.96e-30,46;UBERON:0002346,1.20e-28,64;UBERON:0003075,1.20e-28,64;UBERON:0007284,1.20e-28,64;UBERON:0004121,3.36e-28,95;UBERON:0000924,3.36e-28,95;UBERON:0006601,3.36e-28,95;UBERON:0002780,5.17e-28,39;UBERON:0001890,5.17e-28,39;UBERON:0006240,5.17e-28,39;UBERON:0010371,3.40e-24,73;UBERON:0003056,3.26e-23,49;UBERON:0002021,1.33e-21,10;UBERON:0000411,1.33e-21,10;UBERON:0001950,1.33e-21,10;UBERON:0000956,1.06e-18,21;UBERON:0001869,1.06e-18,21;UBERON:0000203,1.06e-18,21;UBERON:0002619,1.07e-17,17;UBERON:0010314,1.17e-17,92;UBERON:0000025,8.15e-13,114;UBERON:0002420,1.24e-12,8;UBERON:0007245,1.24e-12,8;UBERON:0010009,1.24e-12,8;UBERON:0010011,1.24e-12,8;UBERON:0000454,1.24e-12,8;UBERON:0004111,1.73e-11,122;UBERON:0002950,6.08e-10,4;UBERON:0001891,6.08e-10,4;UBERON:0009616,6.08e-10,4;UBERON:0010286,6.08e-10,4;UBERON:0001948,8.56e-10,5;UBERON:0002315,8.56e-10,5;UBERON:0011216,1.54e-09,194;UBERON:0004684,3.13e-08,3;UBERON:0002275,3.13e-08,3;UBERON:0002240,4.10e-08,6;UBERON:0005174,4.10e-08,6;UBERON:0001137,4.10e-08,6;UBERON:0002038,6.56e-08,3;UBERON:0009663,6.56e-08,3;UBERON:0009661,6.56e-08,3;UBERON:0000125,6.56e-08,3;UBERON:0002308,6.56e-08,3;UBERON:0003076,2.03e-07,12;UBERON:0003057,2.03e-07,12 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.765389611359628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194429899074283,0,0,0,0,0,0,0,0,1.82084814773638,2.64495489636016,1.90149421051854,0,0,0,0,0,0,0,0.311068836925433,1.08004750665353,0.210324961351382,1.42825492201902,1.54607978666129,0.979926393719632,0.766763768145891,0.919218786610021,11.0115880999389,5.36286819957788,7.98753972932466,1.18697658957174,1.9212405156506,2.6045668527838,7.81712397203867,3.93933827022176,6.57032465440283,1.47314292736834,1.56608848879013,2.23679334990361,0.075726193333184,0.226714680320357,0,0,0,0,0,0,0.140444420131752,0,0,0,0.422530259330042,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0,0.230615497256059,0,0,0,0,0,0,0.161766849947409,0,0,0,0.292780797011547,0.209446706813455,0,0,0,0,4.79330046095433,1.83000241127451,0.628271760564322,4.34560800480691,4.09144731728529,4.36354893575076,3.0825839982874,0.101839363850316,0,0,0,0.130120442962704,0.229902104433473,0,0,0.0680364991513279,0.2562274405697,0.281105173679186,0,0,0,0.351902248327898,0.219195732427575,0.278047249225598,0,0,0.398068533636986,0,0,0,0,0.234526059981096,0.180062061461015,0,0,0.154267112887378,0,0,0.116765342367169,0,0.164167464079095,0.162137619091711,0,0,0.134206418760372,13.4585567081041,9.8788427884113,0,0,0,0.464473343720877,0,0.403367049246685,0.22237804384487,0.380451252225118,0,0,0.251335208800269,0.397912944082302,0.779856348476481,0,0.432276099749388,0,0,0,0,0,0,0,0,0,0,0,0,0.500535317148282,0.393117990226406,0.449724224769707,0.608580364165509,0,0,0.287696137450811,0.486405680325106,0,0,0,0.312037673114561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.72936002979246,2.10981035865966,0,0,0,0,0,0,0,0,0,0,0,1.92792789853084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0.129358683782755,0,0.532020700926821,0.178368817602071,0.493647061806363,1.2178597964584,0,0,0,0,0,0.0603129249281559,0,0,0.582961673259701,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66183396182839,1.16670713006429,0.129159823477731,0.168956125490778,1.40828686374905,0.13020438484395,0.314578033277133,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.25900737046827,3.68260189205742,1.14579102687879,3.60891682921744,6.85082519770642,6.7985450765073,6.07520250208625,4.95353323546643,5.89085131679466,8.80192529978094,0.103787347584177,0,0.170733605754134,0.972426868273176,0.419226325255965,0.551530525350042,0.666740183404846,0.412070114477788,0,0.252697211763798,0,0.377252682772152,0.37456602987953,0.384150914429216,0.402048282689293,0.952587382566147,0.695305955669133,0.192909220463705,0,0.588795680537589,0.342869252385415,0.354951612318675,0.953744759789284,0.726732083161643,0.376437521661322,0.423073039458382,0.182927972872773,0.526139422875686,0.407412341537585,0,0.237270036248348,0.591026894253381,0,0.154936841185966,0.385813221962283,0.999242311751784,0.467863216890817,0.644613162144895,0,0,0.231867835620421 | |phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.765389611359628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194429899074283,0,0,0,0,0,0,0,0,1.82084814773638,2.64495489636016,1.90149421051854,0,0,0,0,0,0,0,0.311068836925433,1.08004750665353,0.210324961351382,1.42825492201902,1.54607978666129,0.979926393719632,0.766763768145891,0.919218786610021,11.0115880999389,5.36286819957788,7.98753972932466,1.18697658957174,1.9212405156506,2.6045668527838,7.81712397203867,3.93933827022176,6.57032465440283,1.47314292736834,1.56608848879013,2.23679334990361,0.075726193333184,0.226714680320357,0,0,0,0,0,0,0.140444420131752,0,0,0,0.422530259330042,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0,0.230615497256059,0,0,0,0,0,0,0.161766849947409,0,0,0,0.292780797011547,0.209446706813455,0,0,0,0,4.79330046095433,1.83000241127451,0.628271760564322,4.34560800480691,4.09144731728529,4.36354893575076,3.0825839982874,0.101839363850316,0,0,0,0.130120442962704,0.229902104433473,0,0,0.0680364991513279,0.2562274405697,0.281105173679186,0,0,0,0.351902248327898,0.219195732427575,0.278047249225598,0,0,0.398068533636986,0,0,0,0,0.234526059981096,0.180062061461015,0,0,0.154267112887378,0,0,0.116765342367169,0,0.164167464079095,0.162137619091711,0,0,0.134206418760372,13.4585567081041,9.8788427884113,0,0,0,0.464473343720877,0,0.403367049246685,0.22237804384487,0.380451252225118,0,0,0.251335208800269,0.397912944082302,0.779856348476481,0,0.432276099749388,0,0,0,0,0,0,0,0,0,0,0,0,0.500535317148282,0.393117990226406,0.449724224769707,0.608580364165509,0,0,0.287696137450811,0.486405680325106,0,0,0,0.312037673114561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.72936002979246,2.10981035865966,0,0,0,0,0,0,0,0,0,0,0,1.92792789853084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0.129358683782755,0,0.532020700926821,0.178368817602071,0.493647061806363,1.2178597964584,0,0,0,0,0,0.0603129249281559,0,0,0.582961673259701,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66183396182839,1.16670713006429,0.129159823477731,0.168956125490778,1.40828686374905,0.13020438484395,0.314578033277133,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.25900737046827,3.68260189205742,1.14579102687879,3.60891682921744,6.85082519770642,6.7985450765073,6.07520250208625,4.95353323546643,5.89085131679466,8.80192529978094,0.103787347584177,0,0.170733605754134,0.972426868273176,0.419226325255965,0.551530525350042,0.666740183404846,0.412070114477788,0,0.252697211763798,0,0.377252682772152,0.37456602987953,0.384150914429216,0.402048282689293,0.952587382566147,0.695305955669133,0.192909220463705,0,0.588795680537589,0.342869252385415,0.354951612318675,0.953744759789284,0.726732083161643,0.376437521661322,0.423073039458382,0.182927972872773,0.526139422875686,0.407412341537585,0,0.237270036248348,0.591026894253381,0,0.154936841185966,0.385813221962283,0.999242311751784,0.467863216890817,0.644613162144895,0,0,0.231867835620421 | ||
|short_description=p2@6030405A18Rik | |short_description=p2@6030405A18Rik | ||
}} | }} |
Latest revision as of 14:29, 25 September 2015
Short description: | p2@6030405A18Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_6030405A18Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:708 |
Association with transcript: | -98bp_to_ENSMUST00000070342, NM_177854, uc008pfx.2_5end |
EntrezGene: | 6030405A18Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.86e-26 | 23 |
neuroblast (sensu Vertebrata) | 2.86e-26 | 23 |
neuron | 5.66e-17 | 33 |
neuronal stem cell | 5.66e-17 | 33 |
neuroblast | 5.66e-17 | 33 |
electrically signaling cell | 5.66e-17 | 33 |
electrically responsive cell | 1.07e-13 | 39 |
electrically active cell | 1.07e-13 | 39 |
neural cell | 5.02e-12 | 43 |
ectodermal cell | 1.17e-11 | 44 |
neurectodermal cell | 1.17e-11 | 44 |
raphe nuclei neuron | 3.13e-08 | 3 |
neuron of the substantia nigra | 6.56e-08 | 3 |
granule cell | 8.78e-07 | 3 |