FFCP PHASE1:Mm9::chr2:22477939..22477950,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=14417 | |EntrezGene=14417 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=745 | |||
|TSSclassifier=NA | |||
|UniProt=P48320,Q548L4,Q3URJ3 | |UniProt=P48320,Q548L4,Q3URJ3 | ||
|association_with_transcript=92bp_to_NM_008078,uc008ini.1,uc008inj.1,uc008ink.1_5end | |association_with_transcript=92bp_to_NM_008078,uc008ini.1,uc008inj.1,uc008ink.1_5end | ||
|cluster_id=chr2:22477939..22477950,+ | |||
|description=CAGE_peak_13_at_Gad2_5end | |description=CAGE_peak_13_at_Gad2_5end | ||
|id=chr2:22477939..22477950,+ | |id=chr2:22477939..22477950,+ | ||
|ontology_enrichment_celltype=CL:0000117!1.44e-22!23;CL:0000337!1.44e-22!23;CL:0000540!2.83e-13!33;CL:0000047!2.83e-13!33;CL:0000031!2.83e-13!33;CL:0000404!2.83e-13!33;CL:0000393!4.47e-10!39;CL:0000211!4.47e-10!39;CL:0002319!2.87e-09!43;CL:0000221!6.85e-09!44;CL:0000133!6.85e-09!44;CL:0000055!5.58e-07!50;CL:0002609!9.79e-07!6 | |ontology_enrichment_celltype=CL:0000117!1.44e-22!23;CL:0000337!1.44e-22!23;CL:0000540!2.83e-13!33;CL:0000047!2.83e-13!33;CL:0000031!2.83e-13!33;CL:0000404!2.83e-13!33;CL:0000393!4.47e-10!39;CL:0000211!4.47e-10!39;CL:0002319!2.87e-09!43;CL:0000221!6.85e-09!44;CL:0000133!6.85e-09!44;CL:0000055!5.58e-07!50;CL:0002609!9.79e-07!6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.04e-23,23;CL:0000337,1.04e-23,23;CL:0000540,3.10e-15,33;CL:0000047,3.10e-15,33;CL:0000031,3.10e-15,33;CL:0000404,3.10e-15,33;CL:0000393,2.99e-12,39;CL:0000211,2.99e-12,39;CL:0002319,9.90e-11,43;CL:0000221,2.15e-10,44;CL:0000133,2.15e-10,44;CL:0002608,2.15e-08,3;CL:0002610,1.79e-07,3;CL:0000120,8.08e-07,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.10e-30!52;UBERON:0005068!2.10e-30!52;UBERON:0006241!2.10e-30!52;UBERON:0007135!2.10e-30!52;UBERON:0000955!3.98e-29!50;UBERON:0006238!3.98e-29!50;UBERON:0002020!5.22e-29!34;UBERON:0000033!1.71e-28!63;UBERON:0002616!6.42e-28!49;UBERON:0001017!1.12e-27!73;UBERON:0005743!1.12e-27!73;UBERON:0002346!4.02e-27!71;UBERON:0003075!4.02e-27!71;UBERON:0007284!4.02e-27!71;UBERON:0000073!1.74e-26!75;UBERON:0001016!1.74e-26!75;UBERON:0002791!2.75e-24!29;UBERON:0003528!2.75e-24!29;UBERON:0001893!2.75e-24!29;UBERON:0003056!1.25e-23!49;UBERON:0004121!4.82e-22!102;UBERON:0000924!4.82e-22!102;UBERON:0006601!4.82e-22!102;UBERON:0003080!2.20e-21!40;UBERON:0002780!2.81e-20!39;UBERON:0001890!2.81e-20!39;UBERON:0006240!2.81e-20!39;UBERON:0007811!1.01e-16!86;UBERON:0000956!1.96e-16!21;UBERON:0001869!1.96e-16!21;UBERON:0000203!1.96e-16!21;UBERON:0000153!4.84e-14!94;UBERON:0002619!1.31e-13!17;UBERON:0002021!7.48e-11!10;UBERON:0000411!7.48e-11!10;UBERON:0001950!7.48e-11!10;UBERON:0003076!2.02e-09!12;UBERON:0003057!2.02e-09!12;UBERON:0002420!5.07e-09!8;UBERON:0007245!5.07e-09!8;UBERON:0010009!5.07e-09!8;UBERON:0010011!5.07e-09!8;UBERON:0000454!5.07e-09!8;UBERON:0002298!2.37e-07!6;UBERON:0000025!4.61e-07!114;UBERON:0002240!8.46e-07!6;UBERON:0005174!8.46e-07!6;UBERON:0001137!8.46e-07!6 | |ontology_enrichment_uberon=UBERON:0001049!2.10e-30!52;UBERON:0005068!2.10e-30!52;UBERON:0006241!2.10e-30!52;UBERON:0007135!2.10e-30!52;UBERON:0000955!3.98e-29!50;UBERON:0006238!3.98e-29!50;UBERON:0002020!5.22e-29!34;UBERON:0000033!1.71e-28!63;UBERON:0002616!6.42e-28!49;UBERON:0001017!1.12e-27!73;UBERON:0005743!1.12e-27!73;UBERON:0002346!4.02e-27!71;UBERON:0003075!4.02e-27!71;UBERON:0007284!4.02e-27!71;UBERON:0000073!1.74e-26!75;UBERON:0001016!1.74e-26!75;UBERON:0002791!2.75e-24!29;UBERON:0003528!2.75e-24!29;UBERON:0001893!2.75e-24!29;UBERON:0003056!1.25e-23!49;UBERON:0004121!4.82e-22!102;UBERON:0000924!4.82e-22!102;UBERON:0006601!4.82e-22!102;UBERON:0003080!2.20e-21!40;UBERON:0002780!2.81e-20!39;UBERON:0001890!2.81e-20!39;UBERON:0006240!2.81e-20!39;UBERON:0007811!1.01e-16!86;UBERON:0000956!1.96e-16!21;UBERON:0001869!1.96e-16!21;UBERON:0000203!1.96e-16!21;UBERON:0000153!4.84e-14!94;UBERON:0002619!1.31e-13!17;UBERON:0002021!7.48e-11!10;UBERON:0000411!7.48e-11!10;UBERON:0001950!7.48e-11!10;UBERON:0003076!2.02e-09!12;UBERON:0003057!2.02e-09!12;UBERON:0002420!5.07e-09!8;UBERON:0007245!5.07e-09!8;UBERON:0010009!5.07e-09!8;UBERON:0010011!5.07e-09!8;UBERON:0000454!5.07e-09!8;UBERON:0002298!2.37e-07!6;UBERON:0000025!4.61e-07!114;UBERON:0002240!8.46e-07!6;UBERON:0005174!8.46e-07!6;UBERON:0001137!8.46e-07!6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.24e-35,54;UBERON:0001017,2.88e-34,73;UBERON:0001016,3.91e-33,75;UBERON:0001049,9.77e-32,52;UBERON:0005068,9.77e-32,52;UBERON:0006241,9.77e-32,52;UBERON:0007135,9.77e-32,52;UBERON:0002020,1.25e-31,34;UBERON:0002346,5.08e-28,64;UBERON:0003075,5.08e-28,64;UBERON:0007284,5.08e-28,64;UBERON:0004121,1.64e-27,95;UBERON:0000924,1.64e-27,95;UBERON:0006601,1.64e-27,95;UBERON:0000955,1.28e-26,47;UBERON:0006238,1.28e-26,47;UBERON:0003528,3.57e-26,29;UBERON:0002791,3.57e-26,29;UBERON:0001893,3.57e-26,29;UBERON:0002616,7.81e-25,46;UBERON:0003080,1.46e-24,40;UBERON:0010371,1.25e-23,73;UBERON:0002780,8.50e-23,39;UBERON:0001890,8.50e-23,39;UBERON:0006240,8.50e-23,39;UBERON:0003056,1.62e-22,49;UBERON:0002619,2.49e-19,17;UBERON:0000956,1.14e-17,21;UBERON:0001869,1.14e-17,21;UBERON:0000203,1.14e-17,21;UBERON:0010314,3.51e-17,92;UBERON:0002021,1.24e-15,10;UBERON:0000411,1.24e-15,10;UBERON:0001950,1.24e-15,10;UBERON:0000025,1.54e-10,114;UBERON:0002420,1.24e-09,8;UBERON:0007245,1.24e-09,8;UBERON:0010009,1.24e-09,8;UBERON:0010011,1.24e-09,8;UBERON:0000454,1.24e-09,8;UBERON:0004111,2.21e-09,122;UBERON:0002240,3.01e-08,6;UBERON:0005174,3.01e-08,6;UBERON:0001137,3.01e-08,6;UBERON:0011216,1.12e-07,194;UBERON:0003076,1.68e-07,12;UBERON:0003057,1.68e-07,12;UBERON:0004684,1.79e-07,3;UBERON:0002275,1.79e-07,3;UBERON:0000369,1.94e-07,5;UBERON:0002435,1.94e-07,5;UBERON:0000204,1.94e-07,5;UBERON:0010082,1.94e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,1.61853168687678,3.1739458756322,1.26766280701236,0,0,0,0,0,0,0,0.414758449233911,0.675029691658453,0.210324961351382,1.42825492201902,1.32521124570968,5.75706756310284,6.51749202924007,10.1114066527102,3.30347642998166,2.17068474744819,2.76491759861238,1.84640802822271,1.55528994124096,0.52091337055676,3.07101298901519,0.56276261003168,1.98637722109853,1.47314292736834,0.996601765593721,1.67759501242771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0.304465478312141,0,0,0,0,0,0,0,0,0,0,0,0.878342391034642,0.628340120440365,0,0,0,0,4.04434726393021,5.03250663100489,3.64397621127307,2.43354048269187,1.27857728665165,4.36354893575076,3.56930778749067,0,0,0,0,0,0,0.720248519221397,0.90422890701429,1.08858398642125,1.15302348256365,0.562210347358373,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0,2.10289948564127,0.514523061896422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9266070798535,2.22702204525186,0,0,0,0,0,0,0,0,0,0,0,5.46246237917072,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177340233642274,0,0,0,0,0,0,0,0,0,0,0,0,2.03967832211561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501572104035363,2.25900737046827,2.30162618253588,2.86447756719698,1.3748254587495,3.42541259885321,0.755393897389701,1.35004500046361,1.35096360967266,2.71885445390523,1.03552062350364,0,1.19707462020309,1.36586884603307,0.486213434136588,0.419226325255965,0.367687016900028,0.222246727801615,0,0.320919209591815,0.252697211763798,0.25347929989024,0.188626341386076,0.37456602987953,0.128050304809739,0.17230640686684,0,0.231768651889711,0.192909220463705,0.412085900803307,0.294397840268795,0.342869252385415,0.177475806159338,0.476872379894642,0.145346416632329,0.188218760830661,0.507687647350059,0.365855945745545,0.526139422875686,0.135804113845862,0.561142271657738,0.237270036248348,0.0985044823755635,1.22769312950907,0.309873682371932,0.192906610981141,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,1.61853168687678,3.1739458756322,1.26766280701236,0,0,0,0,0,0,0,0.414758449233911,0.675029691658453,0.210324961351382,1.42825492201902,1.32521124570968,5.75706756310284,6.51749202924007,10.1114066527102,3.30347642998166,2.17068474744819,2.76491759861238,1.84640802822271,1.55528994124096,0.52091337055676,3.07101298901519,0.56276261003168,1.98637722109853,1.47314292736834,0.996601765593721,1.67759501242771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0.304465478312141,0,0,0,0,0,0,0,0,0,0,0,0.878342391034642,0.628340120440365,0,0,0,0,4.04434726393021,5.03250663100489,3.64397621127307,2.43354048269187,1.27857728665165,4.36354893575076,3.56930778749067,0,0,0,0,0,0,0.720248519221397,0.90422890701429,1.08858398642125,1.15302348256365,0.562210347358373,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0,2.10289948564127,0.514523061896422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9266070798535,2.22702204525186,0,0,0,0,0,0,0,0,0,0,0,5.46246237917072,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177340233642274,0,0,0,0,0,0,0,0,0,0,0,0,2.03967832211561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501572104035363,2.25900737046827,2.30162618253588,2.86447756719698,1.3748254587495,3.42541259885321,0.755393897389701,1.35004500046361,1.35096360967266,2.71885445390523,1.03552062350364,0,1.19707462020309,1.36586884603307,0.486213434136588,0.419226325255965,0.367687016900028,0.222246727801615,0,0.320919209591815,0.252697211763798,0.25347929989024,0.188626341386076,0.37456602987953,0.128050304809739,0.17230640686684,0,0.231768651889711,0.192909220463705,0.412085900803307,0.294397840268795,0.342869252385415,0.177475806159338,0.476872379894642,0.145346416632329,0.188218760830661,0.507687647350059,0.365855945745545,0.526139422875686,0.135804113845862,0.561142271657738,0.237270036248348,0.0985044823755635,1.22769312950907,0.309873682371932,0.192906610981141,0,0,0,0,0,0 | ||
|short_description=p13@Gad2 | |short_description=p13@Gad2 | ||
}} | }} |
Latest revision as of 09:05, 26 September 2015
Short description: | p13@Gad2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_13_at_Gad2_5end |
Coexpression cluster: | MCL_coexpression_mm9:745 |
Association with transcript: | 92bp_to_NM_008078, uc008ini.1, uc008inj.1, uc008ink.1_5end |
EntrezGene: | Gad2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.04e-23 | 23 |
neuroblast (sensu Vertebrata) | 1.04e-23 | 23 |
neuron | 3.10e-15 | 33 |
neuronal stem cell | 3.10e-15 | 33 |
neuroblast | 3.10e-15 | 33 |
electrically signaling cell | 3.10e-15 | 33 |
electrically responsive cell | 2.99e-12 | 39 |
electrically active cell | 2.99e-12 | 39 |
neural cell | 9.90e-11 | 43 |
ectodermal cell | 2.15e-10 | 44 |
neurectodermal cell | 2.15e-10 | 44 |
hippocampal neuron | 2.15e-08 | 3 |
raphe nuclei neuron | 1.79e-07 | 3 |
granule cell | 8.08e-07 | 3 |