FF:630-43F1: Difference between revisions

Latest revision as of 19:18, 4 June 2020

Name:	corpus striatum, neonate N00
Species:	Mouse (Mus musculus)
Library ID:	CNhs11226
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	corpus striatum
dev stage	0 day neonate
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005145

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11226		CAGE		DRX008946		DRR009820

Accession ID Mm9

Library id		BAM		CTSS
CNhs11226		DRZ001245		DRZ002628

Accession ID Mm10

Library id		BAM		CTSS
CNhs11226		DRZ012595		DRZ013978

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11226

0	0
1	0.452
10	0
100	0.329
1000	0
1001	-0.0668
1002	0.101
1003	0.0216
1004	0
1005	0
1006	0.459
1007	0.0964
1008	0
1009	-0.2
101	0.00721
1010	0
1011	0.559
1012	0.329
1013	-0.0225
1014	-0.0851
1015	0.338
1016	0.183
1017	0
1018	0
1019	0
102	0
1020	0
1021	0
1022	-0.103
1023	0
1024	-0.0882
1025	-0.0611
1026	0
1027	0.479
1028	0
1029	0.078
103	-0.0887
1030	0
1031	-0.481
1032	-0.112
1033	0
1034	0
1035	0
1036	-0.131
1037	0
1038	0.124
1039	-0.178
104	0
1040	-0.268
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11226

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	5.96898e-4
MA0003.1	MA0003.1	0.161
MA0004.1	MA0004.1	0.806
MA0006.1	MA0006.1	0.0842
MA0007.1	MA0007.1	0.251
MA0009.1	MA0009.1	0.905
MA0014.1	MA0014.1	0.458
MA0017.1	MA0017.1	3.71339e-6
MA0018.2	MA0018.2	0.00463
MA0019.1	MA0019.1	0.164
MA0024.1	MA0024.1	0.568
MA0025.1	MA0025.1	0.363
MA0027.1	MA0027.1	0.0939
MA0028.1	MA0028.1	0.656
MA0029.1	MA0029.1	0.565
MA0030.1	MA0030.1	0.196
MA0031.1	MA0031.1	0.0196
MA0035.2	MA0035.2	0.0327
MA0038.1	MA0038.1	0.0971
MA0039.2	MA0039.2	0.0254
MA0040.1	MA0040.1	0.157
MA0041.1	MA0041.1	0.86
MA0042.1	MA0042.1	0.612
MA0043.1	MA0043.1	0.0218
MA0046.1	MA0046.1	7.68877e-14
MA0047.2	MA0047.2	2.30883e-6
MA0048.1	MA0048.1	0.351
MA0050.1	MA0050.1	3.39151e-6
MA0051.1	MA0051.1	0.00202
MA0052.1	MA0052.1	0.0133
MA0055.1	MA0055.1	0.266
MA0057.1	MA0057.1	0.127
MA0058.1	MA0058.1	0.7
MA0059.1	MA0059.1	0.538
MA0060.1	MA0060.1	0.0133
MA0061.1	MA0061.1	0.0794
MA0062.2	MA0062.2	0.298
MA0065.2	MA0065.2	9.13215e-6
MA0066.1	MA0066.1	0.125
MA0067.1	MA0067.1	0.548
MA0068.1	MA0068.1	0.6
MA0069.1	MA0069.1	0.119
MA0070.1	MA0070.1	0.524
MA0071.1	MA0071.1	0.134
MA0072.1	MA0072.1	0.124
MA0073.1	MA0073.1	0.664
MA0074.1	MA0074.1	0.285
MA0076.1	MA0076.1	0.709
MA0077.1	MA0077.1	0.153
MA0078.1	MA0078.1	0.289
MA0079.2	MA0079.2	0.638
MA0080.2	MA0080.2	4.96795e-11
MA0081.1	MA0081.1	0.391
MA0083.1	MA0083.1	5.77967e-4
MA0084.1	MA0084.1	0.678
MA0087.1	MA0087.1	0.906
MA0088.1	MA0088.1	0.385
MA0090.1	MA0090.1	0.0187
MA0091.1	MA0091.1	0.248
MA0092.1	MA0092.1	0.199
MA0093.1	MA0093.1	0.824
MA0099.2	MA0099.2	4.35813e-5
MA0100.1	MA0100.1	0.996
MA0101.1	MA0101.1	0.094
MA0102.2	MA0102.2	0.677
MA0103.1	MA0103.1	0.129
MA0104.2	MA0104.2	0.498
MA0105.1	MA0105.1	0.0764
MA0106.1	MA0106.1	0.178
MA0107.1	MA0107.1	0.117
MA0108.2	MA0108.2	1.74017e-4
MA0111.1	MA0111.1	0.926
MA0112.2	MA0112.2	2.37158e-4
MA0113.1	MA0113.1	0.317
MA0114.1	MA0114.1	6.7228e-5
MA0115.1	MA0115.1	0.0013
MA0116.1	MA0116.1	0.0878
MA0117.1	MA0117.1	0.953
MA0119.1	MA0119.1	0.113
MA0122.1	MA0122.1	0.92
MA0124.1	MA0124.1	0.903
MA0125.1	MA0125.1	0.133
MA0131.1	MA0131.1	0.774
MA0135.1	MA0135.1	0.553
MA0136.1	MA0136.1	3.11382e-9
MA0137.2	MA0137.2	0.145
MA0138.2	MA0138.2	0.304
MA0139.1	MA0139.1	0.377
MA0140.1	MA0140.1	5.94122e-4
MA0141.1	MA0141.1	0.00174
MA0142.1	MA0142.1	0.039
MA0143.1	MA0143.1	0.112
MA0144.1	MA0144.1	0.0702
MA0145.1	MA0145.1	0.036
MA0146.1	MA0146.1	0.0409
MA0147.1	MA0147.1	0.609
MA0148.1	MA0148.1	2.55932e-6
MA0149.1	MA0149.1	0.056
MA0150.1	MA0150.1	0.0489
MA0152.1	MA0152.1	0.388
MA0153.1	MA0153.1	2.9665e-12
MA0154.1	MA0154.1	0.0258
MA0155.1	MA0155.1	0.556
MA0156.1	MA0156.1	3.23932e-5
MA0157.1	MA0157.1	0.00864
MA0159.1	MA0159.1	6.49223e-4
MA0160.1	MA0160.1	0.0132
MA0162.1	MA0162.1	0.2
MA0163.1	MA0163.1	0.00403
MA0164.1	MA0164.1	0.902
MA0258.1	MA0258.1	0.00881
MA0259.1	MA0259.1	0.406

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11226

Novel motif	Logo	P-value
1	1	0.181
10	10	0.149
100	100	0.733
101	101	0.941
102	102	0.941
103	103	0.128
104	104	0.972
105	105	0.167
106	106	0.00628
107	107	0.0338
108	108	0.826
109	109	0.00511
11	11	0.0764
110	110	0.0794
111	111	0.128
112	112	0.00433
113	113	0.774
114	114	0.231
115	115	0.723
116	116	0.383
117	117	0.0732
118	118	0.582
119	119	0.189
12	12	0.702
120	120	0.859
121	121	0.422
122	122	0.979
123	123	0.305
124	124	0.476
125	125	0.648
126	126	0.141
127	127	0.0865
128	128	0.015
129	129	0.0803
13	13	2.89775e-5
130	130	0.801
131	131	0.361
132	132	0.843
133	133	0.584
134	134	0.228
135	135	0.985
136	136	0.0622
137	137	0.548
138	138	0.913
139	139	0.21
14	14	0.606
140	140	0.224
141	141	0.174
142	142	0.206
143	143	0.528
144	144	0.846
145	145	0.0182
146	146	0.286
147	147	0.903
148	148	0.356
149	149	0.101
15	15	0.154
150	150	0.124
151	151	0.419
152	152	0.0465
153	153	0.803
154	154	0.994
155	155	0.421
156	156	0.0402
157	157	0.26
158	158	0.356
159	159	0.96
160	160	0.155
161	161	0.126
162	162	0.961
163	163	0.382
164	164	0.0803
165	165	0.00516
166	166	0.513
167	167	0.365
168	168	0.355
169	169	0.00566
17	17	0.0184
18	18	1
19	19	0.0339
2	2	0.616
20	20	0.559
21	21	0.412
22	22	0.0795
23	23	0.226
24	24	0.0247
25	25	0.681
26	26	3.97978e-5
27	27	0.699
28	28	0.559
29	29	0.112
3	3	0.11
30	30	0.733
31	31	0.727
32	32	0.342
33	33	0.279
34	34	0.541
35	35	0.675
36	36	0.584
37	37	0.0166
38	38	0.414
39	39	0.184
4	4	0.538
40	40	0.199
41	41	0.659
42	42	0.342
43	43	0.131
44	44	0.446
45	45	0.47
46	46	0.173
47	47	0.213
48	48	0.181
49	49	0.202
5	5	0.164
50	50	0.231
51	51	0.621
52	52	0.101
53	53	0.76
54	54	0.602
55	55	0.8
56	56	0.338
57	57	0.726
58	58	0.285
59	59	0.0364
6	6	0.851
60	60	0.0157
61	61	0.181
62	62	0.141
63	63	0.101
64	64	0.725
65	65	0.227
66	66	0.991
67	67	0.471
68	68	0.909
69	69	0.519
7	7	0.0358
70	70	0.0312
71	71	0.0165
72	72	0.359
73	73	0.0223
74	74	0.388
75	75	0.12
76	76	0.933
77	77	0.163
78	78	0.00897
79	79	0.746
8	8	0.149
80	80	0.975
81	81	0.517
82	82	0.0787
83	83	0.0172
84	84	0.776
85	85	0.0402
86	86	0.26
87	87	0.0493
88	88	0.257
89	89	0.391
9	9	0.364
90	90	0.341
91	91	0.114
92	92	0.239
93	93	0.0361
94	94	0.855
95	95	0.0615
96	96	0.336
97	97	0.998
98	98	0.612
99	99	0.15

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11226

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011392 mouse corpus striatum- neonate N00 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0000369 (corpus striatum)
0002435 (striatum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001893 (telencephalon)
0001890 (forebrain)
0010011 (collection of basal ganglia)
0000204 (ventral part of telencephalon)
0000454 (cerebral subcortex)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000304 (mouse neonate N0 sample)
0011392 (mouse corpus striatum- neonate N00 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0010082 (future corpus striatum)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005145
+|accession_numbers=CAGE;DRX008946;DRR009820;DRZ001245;DRZ002628;DRZ012595;DRZ013978
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0000369,UBERON:0002435,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001893,UBERON:0001890,UBERON:0010011,UBERON:0000204,UBERON:0000454
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.90!98.39!Pou3f3;;chr2:71384802..71384815,-!p1@Dlx2!1.88!90.60!Dlx2;;chrX:90531838..90531861,+!p1@Arx!1.86!88.08!Arx;;chr3:95032091..95032183,-!p1@Mllt11!1.75!447.58!Mllt11;;chr12:109242266..109242295,-!p1@Bcl11b!1.72!408.00!Bcl11b;;chr17:48015839..48015915,-!p3@Foxp4!1.72!60.57!Foxp4;;chr7:30088977..30089002,+!p2@Dpf1!1.70!67.35!Dpf1;;chr8:12395603..12395621,+!p1@Sox1!1.69!48.50!Sox1;;chr2:73109983..73109996,+!p1@Sp9!1.69!47.50!Sp9;;chr6:6832076..6832092,-!p1@Dlx5!1.68!55.04!Dlx5;;chr16:91270004..91270023,+!p1@Olig1!1.67!52.65!Olig1;;chr12:28027561..28027591,-!p1@Sox11!1.65!274.68!Sox11;;chr1:169528457..169528482,+!p3@Rxrg!1.65!43.73!Rxrg;;chr2:65683890..65683907,+!p1@Csrnp3!1.62!76.27!Csrnp3;;chr6:55631042..55631102,-!p1@Neurod6!1.62!40.71!Neurod6;;chr1:169528491..169528505,+!p4@Rxrg!1.60!38.95!Rxrg;;chr7:116154364..116154444,+!p1@Tub!1.57!60.44!Tub;;chr16:91225808..91225824,+!p1@Olig2!1.57!35.94!Olig2;;chrX:108009761..108009788,+!p1@Pou3f4!1.54!33.93!Pou3f4;;chr13:117099847..117099907,-!p1@Isl1!1.51!57.05!Isl1;;chr12:30213247..30213333,+!p1@Myt1l!1.51!31.66!Myt1l;;chr1:169528520..169528542,+!p2@Rxrg!1.51!31.04!Rxrg;;chr2:71367142..71367167,+!p2@Dlx1!1.51!31.04!Dlx1;;chr15:76352832..76352900,-!p1@Scrt1!1.50!30.41!Scrt1;;chr17:25707623..25707639,-!p1@Sox8!1.48!120.50!Sox8;;chr12:30220074..30220102,+!p3@Myt1l!1.48!29.03!Myt1l;;chr3:34548909..34548927,+!p1@Sox2!1.47!47.62!Sox2;;chr7:30092993..30093076,+!p1@Dpf1!1.44!45.11!Dpf1;;chr11:23978270..23978290,+!p9@Bcl11a!1.44!26.76!Bcl11a;;chr2:71367871..71367898,+!p1@Dlx1!1.44!26.26!Dlx1;;chr11:98190918..98190951,-!p1@Neurod2!1.43!26.01!Neurod2;;chr12:30219426..30219506,+!p2@Myt1l!1.42!25.51!Myt1l;;chr4:154335024..154335039,+!p1@Hes5!1.41!29.53!Hes5;;chr7:91558472..91558512,-!p2@Arnt2!1.38!32.54!Arnt2;;chr11:23978229..23978268,+!p8@Bcl11a!1.37!25.76!Bcl11a;;chr11:23978291..23978323,+!p7@Bcl11a!1.37!22.62!Bcl11a;;chr11:23980664..23980706,+!p2@Bcl11a!1.36!93.74!Bcl11a;;chr6:6831950..6831985,-!p2@Dlx5!1.36!24.00!Dlx5;;chr2:73110004..73110016,+!p2@Sp9!1.35!21.24!Sp9;;chr2:115891534..115891589,-!p1@Meis2!1.33!281.21!Meis2;;chr1:179374784..179374800,+!p2@Zfp238!1.33!23.62!Zfp238;;chr12:109241728..109241781,-!p2@Bcl11b!1.32!21.36!Bcl11b;;chr11:23977742..23977794,+!p6@Bcl11a!1.30!23.62!Bcl11a;;chr4:150482563..150482655,-!p2@Camta1!1.29!64.08!Camta1;;chr2:65768174..65768247,+!p2@Csrnp3!1.29!18.35!Csrnp3;;chr6:6831928..6831949,-!p3@Dlx5!1.27!17.72!Dlx5;;chr12:109241852..109241873,-!p4@Bcl11b!1.26!20.36!Bcl11b;;chr1:169528581..169528607,+!p7@Rxrg!1.26!17.34!Rxrg;;chr3:34548946..34548972,+!p2@Sox2!1.25!18.47!Sox2;;chr12:50483639..50483654,+!p1@Foxg1!1.24!16.21!Foxg1;;chr2:35959541..35959548,-!p2@Lhx6!1.23!16.08!Lhx6;;chr2:71366660..71366702,+!p3@Dlx1!1.23!15.96!Dlx1;;chr17:86020510..86020589,+!p3@Six3!1.23!15.96!Six3;;chr6:6812988..6813002,+!p3@Dlx6!1.23!15.83!Dlx6;;chr17:86020156..86020183,+!p1@Six3!1.22!15.58!Six3;;chr6:98978245..98978289,-!p1@Foxp1!1.20!217.51!Foxp1;;chr12:109242296..109242307,-!p3@Bcl11b!1.20!21.61!Bcl11b;;chr4:124334894..124334899,+!p1@Pou3f1!1.20!19.48!Pou3f1;;chr2:61642631..61642684,+!p1@Tbr1!1.20!14.95!Tbr1;;chr2:71384458..71384526,-!p2@Dlx2!1.20!14.83!Dlx2;;chr12:30220046..30220070,+!p6@Myt1l!1.20!14.70!Myt1l;;chr4:22415443..22415506,-!p1@Pou3f2!1.19!14.32!Pou3f2;;chr1:169528551..169528569,+!p8@Rxrg!1.18!14.07!Rxrg;;chr12:72149325..72149343,+!p2@Arid4a!1.17!19.23!Arid4a;;chr4:13670571..13670625,+!p1@Runx1t1!1.16!36.94!Runx1t1;;chr10:86956396..86956411,-!p1@Ascl1!1.16!20.73!Ascl1;;chr6:6812962..6812979,+!p1@Dlx6!1.16!13.32!Dlx6;;chr5:138199361..138199441,+!p2@Tsc22d4!1.15!24.63!Tsc22d4;;chr2:146047829..146047847,+!p1@Insm1!1.15!23.87!Insm1;;chr7:130644017..130644092,-!p1@Zkscan2!1.14!24.63!Zkscan2;;chr17:32525943..32525992,-!p4@Wiz!1.13!19.23!Wiz;;chr2:151907338..151907360,+!p2@Scrt2!1.13!12.44!Scrt2;;chr1:169528823..169528860,+!p5@Rxrg!1.13!12.44!Rxrg;;chr7:30089006..30089022,+!p3@Dpf1!1.13!12.44!Dpf1;;chr4:119960301..119960359,-!p1@Foxo6!1.11!38.20!Foxo6;;chr2:115890953..115890974,-!p6@Meis2!1.09!16.96!Meis2;;chr9:91260616..91260653,-!p2@Zic1!1.09!11.43!Zic1;;chr2:151907546..151907561,+!p1@Scrt2!1.09!11.18!Scrt2;;chr6:85463580..85463585,-!p1@Egr4!1.09!11.18!Egr4;;chr6:6813269..6813272,+!p2@Dlx6!1.09!11.18!Dlx6;;chr9:18278055..18278126,-!p1@Zfp558!1.08!31.41!Zfp558;;chr11:23978111..23978134,+!p3@Bcl11a!1.08!22.87!Bcl11a;;chr6:38204274..38204327,-!p3@D630045J12Rik!1.08!21.86!D630045J12Rik;;chr7:25292331..25292421,+!p1@Zfp428!1.07!77.03!Zfp428;;chr9:91260594..91260612,-!p1@Zic1!1.07!10.68!Zic1;;chr7:25292160..25292213,+!p3@Zfp428!1.06!26.39!Zfp428;;chr8:111227641..111227672,+!p@chr8:111227641..111227672,+!1.05!27.64!Zfhx3;;chr5:24104751..24104773,-!p5@Smarcd3!1.05!10.30!Smarcd3;;chr17:37139472..37139514,+!p1@Zfp57!1.04!67.48!Zfp57;;chr3:95032197..95032208,-!p3@Mllt11!1.04!12.44!Mllt11;;chr4:122673278..122673336,+!p1@Mycl1!1.03!31.29!Mycl1;;chr2:79296783..79296801,-!p1@Neurod1!1.03!9.68!Neurod1;;chr1:169528433..169528456,+!p10@Rxrg!1.02!9.55!Rxrg;;chr1:42752654..42752665,+!p@chr1:42752654..42752665,+!1.02!9.42!Pou3f3;;chr4:150503457..150503498,-!p3@Camta1!1.01!10.55!Camta1;;chr17:86020115..86020128,+!p2@Six3!1.01!9.30!Six3;;chr19:19185671..19185693,-!p1@Rorb!1.00!21.99!Rorb;;chr12:54349410..54349461,+!p1@Npas3!1.00!10.81!Npas3;;chr5:24104540..24104584,-!p7@Smarcd3!1.00!8.92!Smarcd3;;chr6:38204214..38204267,-!p4@D630045J12Rik!0.99!16.71!D630045J12Rik;;chrX:58146612..58146615,-!p1@Sox3!0.99!8.80!Sox3;;chr7:25372631..25372684,-!p1@Zfp575!0.98!26.64!Zfp575;;chr17:48015995..48016037,-!p12@Foxp4!0.96!8.17!Foxp4;;chr4:22415290..22415307,-!p2@Pou3f2!0.96!8.17!Pou3f2;;chrX:108009734..108009752,+!p2@Pou3f4!0.96!8.04!Pou3f4;;chr19:59533221..59533271,+!p1@Emx2!0.95!9.80!Emx2;;chr15:76352740..76352781,-!p5@Scrt1!0.95!7.92!Scrt1;;chr4:13670499..13670526,+!p2@Runx1t1!0.94!17.59!Runx1t1;;chr11:116196664..116196679,-!p1@Foxj1!0.94!12.06!Foxj1;;chr2:38206744..38206766,+!p1@Lhx2!0.94!9.42!Lhx2;;chr6:6831986..6832007,-!p4@Dlx5!0.94!7.66!Dlx5;;chr13:29045559..29045574,-!p1@Sox4!0.93!642.09!Sox4;;chr2:34227446..34227511,-!p1@Pbx3!0.93!17.84!Pbx3;;chr15:76353005..76353021,-!p2@Scrt1!0.93!7.54!Scrt1;;chr12:50483663..50483678,+!p3@Foxg1!0.92!7.29!Foxg1;;chr1:57028125..57028149,-!p2@Satb2!0.92!7.29!Satb2;;chr13:48356475..48356492,+!p1@Id4!0.91!162.72!Id4;;chr11:98602203..98602266,+!p4@Thra!0.91!11.43!Thra;;chr13:96094769..96094829,+!p4@Zbed3!0.91!10.43!Zbed3;;chr6:99471147..99471161,-!p9@Foxp1!0.90!9.55!Foxp1;;chr16:91270091..91270143,+!p2@Olig1!0.90!6.91!Olig1;;chr17:46520518..46520571,+!p2@Zfp318!0.89!15.46!Zfp318;;chr17:86020137..86020149,+!p5@Six3!0.88!6.66!Six3;;chr12:50485973..50486015,+!p2@Foxg1!0.88!6.66!Foxg1;;chr2:115890864..115890869,-!p14@Meis2!0.88!6.66!Meis2;;chr2:151907604..151907629,+!p4@Scrt2!0.88!6.66!Scrt2;;chr7:91558392..91558434,-!p1@Arnt2!0.87!18.47!Arnt2;;chr2:115890469..115890485,-!p7@Meis2!0.87!10.55!Meis2;;chr2:115891521..115891532,-!p8@Meis2!0.87!9.42!Meis2;;chr13:44936126..44936164,+!p6@Jarid2!0.87!7.54!Jarid2;;chr5:98609885..98609900,+!p1@Prdm8!0.87!6.41!Prdm8;;chr12:12948633..12948651,-!p1@Mycn!0.86!63.46!Mycn;;chr2:152223783..152223812,-!p4@Sox12!0.86!14.83!Sox12;;chr1:38684431..38684450,-!p3@Aff3!0.85!10.18!Aff3;;chr14:98568683..98568698,-!p6@Dach1!0.85!7.79!Dach1;;chr6:6813551..6813570,+!p5@Dlx6!0.85!6.16!Dlx6;;chr2:181501745..181501778,+!p1@Myt1!0.85!6.03!Myt1;;chr2:65768149..65768173,+!p4@Csrnp3!0.85!6.03!Csrnp3;;chr19:4989964..4989972,-!p1@Npas4!0.85!6.03!Npas4;;chr10:67375368..67375433,-!p1@Zfp365!0.84!10.93!Zfp365;;chr13:29045321..29045337,-!p2@Sox4!0.84!8.29!Sox4;;chr3:95032184..95032195,-!p4@Mllt11!0.84!7.54!Mllt11;;chr2:38206580..38206600,+!p2@Lhx2!0.84!7.41!Lhx2;;chr2:115874845..115874865,-!p20@Meis2!0.84!5.91!Meis2;;chr7:148008023..148008092,-!p1@Zfp941!0.83!14.70!Zfp941;;chr16:43503493..43503570,+!p9@Zbtb20!0.83!10.18!Zbtb20;;chr12:72149359..72149406,+!p4@Arid4a!0.83!7.66!Arid4a;;chr10:42303385..42303401,-!p1@Nr2e1!0.83!5.78!Nr2e1;;chr2:152223881..152223933,-!p3@Sox12!0.82!19.98!Sox12;;chr6:14851440..14851497,+!p2@Foxp2!0.82!14.45!Foxp2;;chr2:115891381..115891392,-!p5@Meis2!0.82!11.56!Meis2;;chr7:91558537..91558558,-!p4@Arnt2!0.82!6.91!Arnt2;;chr8:12395670..12395682,+!p3@Sox1!0.82!5.65!Sox1;;chr1:6720216..6720232,+!p1@St18!0.82!5.65!St18;;chr2:163028808..163028869,+!p1@Tox2!0.81!20.98!Tox2;;chr9:55785981..55786009,-!p2@Scaper!0.81!15.46!Scaper;;chr8:87297280..87297326,-!p2@Nfix!0.81!13.45!Nfix;;chr2:115891770..115891799,-!p25@Meis2!0.81!5.53!Meis2;;chr2:65683842..65683856,+!p3@Csrnp3!0.81!5.53!Csrnp3;;chr3:17954233..17954249,+!p1@Bhlhe22!0.81!5.40!Bhlhe22;;chr17:37139455..37139469,+!p3@Zfp57!0.80!8.67!Zfp57;;chr11:50641183..50641244,-!p1@Zfp354c!0.79!44.10!Zfp354c;;chr7:148513409..148513455,-!p2@Deaf1!0.79!25.88!Deaf1;;chr4:13670626..13670657,+!p5@Runx1t1!0.79!8.17!Runx1t1;;chr4:82145196..82145229,-!p7@Nfib!0.79!5.15!Nfib;;chr2:71384425..71384456,-!p4@Dlx2!0.79!5.15!Dlx2;;chr3:153991607..153991627,-!p2@Lhx8!0.79!5.15!Lhx8;;chr17:86020336..86020352,+!p8@Six3!0.79!5.15!Six3;;chr7:148513456..148513506,-!p1@Deaf1!0.78!86.32!Deaf1;;chr3:95032558..95032641,-!p2@Mllt11!0.78!30.53!Mllt11;;chrX:132420525..132420558,+!p3@Bhlhb9!0.78!22.99!Bhlhb9;;chr2:181501710..181501742,+!p2@Myt1!0.78!5.03!Myt1;;chr15:76352677..76352737,-!p3@Scrt1!0.78!5.03!Scrt1;;chr15:100430414..100430470,-!p1@Pou6f1!0.77!16.21!Pou6f1;;chr14:17407970..17408015,-!p2@Rarb!0.77!13.95!Rarb;;chr1:189821714..189821761,+!p1@Esrrg!0.77!9.68!Esrrg;;chr15:61818965..61819046,+!p3@Myc!0.77!9.05!Myc;;chr8:12395874..12395885,+!p2@Sox1!0.77!4.90!Sox1;;chr2:61642743..61642758,+!p2@Tbr1!0.77!4.90!Tbr1;;chr4:150482353..150482386,-!p6@Camta1!0.77!4.90!Camta1;;chr14:52935876..52935928,-!p1@Sall2!0.76!42.97!Sall2;;chr7:11080671..11080750,-!p1@Zik1!0.76!36.31!Zik1;;chr7:5003165..5003203,+!p2@Zfp580!0.76!28.65!Zfp580;;chr11:98603160..98603171,+!p3@Thra!0.76!24.13!Thra;;chr14:17407878..17407926,-!p1@Rarb!0.76!11.31!Rarb;;chrX:34442872..34442899,-!p1@Nkrf!0.76!6.41!Nkrf;;chr1:38684414..38684427,-!p7@Aff3!0.76!5.78!Aff3;;chr2:162769220..162769252,+!p1@L3mbtl1!0.76!4.77!L3mbtl1;;chr8:12395629..12395644,+!p6@Sox1!0.76!4.77!Sox1;;chr4:13678723..13678739,+!p10@Runx1t1!0.76!4.77!Runx1t1;;chr14:122874619..122874634,+!p1@Zic2!0.76!4.77!Zic2;;chr15:99532709..99532743,+!p1@Smarcd1!0.75!132.94!Smarcd1;;chr13:83663902..83663927,+!p1@Mef2c!0.75!124.65!Mef2c;;chr17:37140628..37140631,+!p2@Zfp57!0.75!9.80!Zfp57;;chr6:47780508..47780583,-!p1@Zfp786!0.75!9.17!Zfp786;;chr3:153993507..153993540,-!p1@Lhx8!0.75!4.65!Lhx8;;chr7:25292141..25292158,+!p2@Zfp428!0.74!17.21!Zfp428;;chr2:71366574..71366587,+!p8@Dlx1!0.74!4.52!Dlx1;;chr17:86012772..86012825,+!p4@Six3!0.74!4.52!Six3;;chr7:16760707..16760787,+!p1@LOC100046899,p1@Meis3!0.73!54.53!Meis3;;chr2:180377386..180377462,-!p1@Tcfl5!0.73!5.40!Tcfl5;;chr11:44431115..44431132,+!p9@Ebf1!0.73!4.40!Ebf1;;chr2:71368815..71368836,+!p4@Dlx1!0.73!4.40!Dlx1;;chr8:72356532..72356611,+!p1@Pbx4!0.72!19.23!Pbx4;;chr6:117813087..117813121,+!p1@Zfp239!0.72!17.72!Zfp239;;chr11:23977565..23977612,+!p5@Bcl11a!0.72!9.93!Bcl11a;;chr3:30993859..30993870,+!p5@Skil!0.72!6.53!Skil;;chr14:118636214..118636235,-!p1@Sox21!0.72!5.28!Sox21;;chr13:44936077..44936096,+!p9@Jarid2!0.72!4.27!Jarid2;;chr9:96632719..96632745,-!p7@Zbtb38!0.72!4.27!Zbtb38;;chr11:98603185..98603208,+!p1@Thra!0.71!285.24!Thra;;chr8:87297878..87297935,-!p3@Nfix!0.71!9.80!Nfix;;chr4:58956447..58956510,+!p1@Zkscan16!0.71!9.68!Zkscan16;;chr2:115891680..115891701,-!p12@Meis2!0.71!5.40!Meis2;;chr3:34549096..34549111,+!p3@Sox2!0.71!4.15!Sox2;;chr10:84218800..84218829,+!p2@Rfx4!0.71!4.15!Rfx4;;chr14:118636238..118636257,-!p2@Sox21!0.71!4.15!Sox21;;chr12:39510042..39510069,+!p8@Etv1!0.71!4.15!Etv1;;chr14:70477113..70477173,+!p1@Egr3!0.71!4.15!Egr3;;chrX:108009798..108009815,+!p3@Pou3f4!0.71!4.15!Pou3f4;;chr4:128483680..128483715,-!p3@Zfp362!0.70!16.34!Zfp362;;chr5:110539286..110539317,+!p2@Zfp605!0.70!10.55!Zfp605;;chr3:95032213..95032226,-!p6@Mllt11!0.70!4.90!Mllt11;;chr4:107353376..107353452,-!p3@Dmrtb1!0.70!4.02!Dmrtb1;;chr11:50729638..50729681,-!p1@Zfp2!0.69!22.99!Zfp2;;chr11:62545367..62545412,-!p1@Zfp287!0.69!17.72!Zfp287;;chr6:53018700..53018759,-!p2@Jazf1!0.69!15.83!Jazf1;;chrX:55283799..55283813,+!p1@Zic3!0.69!3.90!Zic3;;chr17:48015824..48015836,-!p11@Foxp4!0.69!3.90!Foxp4;;chr15:100325682..100325698,-!p1@Csrnp2!0.68!19.98!Csrnp2;;chr2:127347067..127347093,-!p1@Kcnip3!0.68!6.79!Kcnip3;;chr6:99471223..99471254,-!p7@Foxp1!0.68!6.16!Foxp1;;chr11:44431016..44431045,+!p5@Ebf1!0.68!5.65!Ebf1;;chr6:72850124..72850210,-!p7@Kcmf1!0.68!5.28!Kcmf1;;chr4:22415600..22415616,-!p3@Pou3f2!0.68!3.77!Pou3f2;;chr12:109241804..109241823,-!p5@Bcl11b!0.68!3.77!Bcl11b;;chr10:84218895..84218909,+!p1@Rfx4!0.68!3.77!Rfx4;;chr1:42752559..42752566,+!p@chr1:42752559..42752566,+!0.68!3.77!Pou3f3;;chr2:181501988..181502026,+!p3@Myt1!0.68!3.77!Myt1;;chr11:98603119..98603130,+!p2@Thra!0.67!35.56!Thra;;chr7:5003117..5003159,+!p1@Zfp580!0.67!32.17!Zfp580;;chr17:48061584..48061601,-!p2@Foxp4!0.67!27.02!Foxp4;;chr14:76814736..76814781,+!p4@Tsc22d1!0.67!24.25!Tsc22d1;;chr2:115891454..115891471,-!p3@Meis2!0.67!12.31!Meis2;;chr17:35031589..35031630,+!p2@Zbtb12!0.67!7.16!Zbtb12;;chr1:64167972..64168026,-!p1@Klf7!0.66!97.51!Klf7;;chr12:119539902..119539931,-!p2@Sp4!0.66!14.95!Sp4;;chr6:14851287..14851342,+!p1@Foxp2!0.66!13.32!Foxp2;;chr14:55711114..55711159,-!p2@Zfhx2!0.66!8.80!Zfhx2;;chr8:74405624..74405679,+!p3@Zfp709!0.66!6.79!Zfp709;;chr4:13670441..13670463,+!p8@Runx1t1!0.66!4.40!Runx1t1;;chr19:28085628..28085671,-!p1@Rfx3!0.65!27.77!Rfx3;;chr17:48061605..48061629,-!p6@Foxp4!0.65!16.34!Foxp4;;chr3:87945895..87945946,+!p2@Mef2d!0.65!12.44!Mef2d;;chrX:45947787..45947812,-!p3@Zfp280c!0.65!7.66!Zfp280c;;chr11:23978353..23978379,+!p10@Bcl11a!0.65!4.27!Bcl11a;;chr2:152223734..152223756,-!p6@Sox12!0.65!4.27!Sox12;;chr11:98190955..98190968,-!p2@Neurod2!0.65!3.52!Neurod2;;chr2:81893535..81893548,+!p1@Zfp804a!0.65!3.52!Zfp804a;;chr10:82226649..82226694,-!p2@Nfyb!0.64!24.63!Nfyb;;chr7:30568977..30569047,+!p1@Zfp30!0.64!21.99!Zfp30;;chr15:75447105..75447159,+!p1@Zfp41!0.64!15.58!Zfp41;;chr1:170361730..170361769,-!p7@Pbx1!0.64!8.54!Pbx1;;chr2:35960919..35960954,-!p1@Lhx6!0.64!6.91!Lhx6;;chr12:39510206..39510249,+!p3@Etv1!0.64!3.39!Etv1;;chr12:50484072..50484092,+!p4@Foxg1!0.64!3.39!Foxg1;;chr8:12395892..12395919,+!p4@Sox1!0.64!3.39!Sox1;;chr17:86020293..86020318,+!p7@Six3!0.64!3.39!Six3;;chr5:24032551..24032557,-!p@chr5:24032551..24032557,-!0.64!3.39!Gbx1;;chr2:71366595..71366604,+!p10@Dlx1!0.64!3.39!Dlx1;;chr8:108939219..108939296,+!p1@Zfp90!0.63!40.59!Zfp90;;chr2:25562263..25562314,+!p2@Bmyc!0.63!14.58!Bmyc;;chr11:23978078..23978096,+!p4@Bcl11a!0.63!11.43!Bcl11a;;chr17:46520492..46520515,+!p4@Zfp318!0.63!5.03!Zfp318;;chr2:152223762..152223777,-!p8@Sox12!0.63!3.77!Sox12;;chr2:77541432..77541474,-!p5@Zfp385b!0.63!3.27!Zfp385b;;chr12:39510090..39510114,+!p6@Etv1!0.63!3.27!Etv1;;chrX:34442842..34442866,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Foxp2!0.38!1.38!Foxp2;;chr6:98978428..98978450,-!p15@Foxp1!0.38!1.38!Foxp1;;chr2:163030164..163030178,+!p6@Tox2!0.38!1.38!Tox2;;chr2:105515586..105515606,+!p4@Pax6!0.38!1.38!Pax6;;chr14:98568502..98568516,-!p7@Dach1!0.38!1.38!Dach1;;chr12:12947199..12947213,-!p2@Mycn!0.38!1.38!Mycn;;chr14:13178147..13178185,-!p1@Fezf2!0.38!1.38!Fezf2;;chrX:55283827..55283838,+!p3@Zic3!0.38!1.38!Zic3;;chr2:71384193..71384205,-!p5@Dlx2!0.38!1.38!Dlx2;;chr12:109241791..109241802,-!p7@Bcl11b!0.38!1.38!Bcl11b;;chr9:118387300..118387317,+!p1@Eomes!0.38!1.38!Eomes;;chr2:164860270..164860320,-!p1@Ncoa5!0.37!41.59!Ncoa5;;chr11:44430812..44430838,+!p1@Ebf1!0.37!19.98!Ebf1;;chr8:109620410..109620462,-!p1@Terf2!0.37!19.85!Terf2;;chr6:47785649..47785724,+!p1@Zfp398!0.37!16.71!Zfp398;;chr13:67162067..67162114,-!p1@Zfp712!0.37!13.57!Zfp712;;chr19:5424822..5424845,-!p3@Drap1!0.37!7.79!Drap1;;chr6:118405493..118405536,-!p1@Zfp248!0.37!7.41!Zfp248;;chr11:50700965..50701027,-!p1@Zfp454!0.37!6.79!Zfp454;;chr3:5218629..5218684,+!p1@Zfhx4!0.37!6.16!Zfhx4;;chr4:87678709..87678726,-!p4@Mllt3!0.37!5.91!Mllt3;;chr7:50817629..50817652,+!p1@LOC100505180,p1@Zfp658!0.37!4.52!Zfp658;;chr3:8666997..8667012,-!p2@Hey1!0.37!4.15!Hey1;;chr13:78339476..78339515,-!p1@Nr2f1!0.37!2.51!Nr2f1;;chr17:32501360..32501371,-!p5@Wiz!0.37!2.39!Wiz;;chr7:91558631..91558652,-!p3@Arnt2!0.37!2.39!Arnt2;;chr13:83663546..83663560,+!p4@Mef2c!0.37!2.01!Mef2c;;chr2:152223852..152223872,-!p7@Sox12!0.37!2.01!Sox12;;chr6:14851344..14851364,+!p6@Foxp2!0.37!1.76!Foxp2;;chr10:127896295..127896304,+!p6@Smarcc2!0.37!1.76!Smarcc2;;chr13:78338288..78338309,-!p7@Nr2f1!0.37!1.63!Nr2f1;;chr15:101097270..101097290,+!p1@Nr4a1!0.36!20.98!Nr4a1;;chr5:31754831..31754876,+!p1@Zfp512!0.36!14.83!Zfp512;;chr8:125897750..125897758,+!p2@Tcf25!0.36!13.45!Tcf25;;chr2:119698241..119698291,+!p2@Mga!0.36!9.68!Mga;;chr8:112603610..112603656,+!p1@Zfp612!0.36!8.92!Zfp612;;chr4:133309531..133309581,-!p4@Arid1a!0.36!7.92!Arid1a;;chr11:106993487..106993515,-!p2@Bptf!0.36!5.65!Bptf;;chr7:30875490..30875555,-!p1@Zfp566,p1@Zfp82!0.36!5.28!Zfp566;;chr19:41557591..41557634,+!p3@Lcor!0.36!4.52!Lcor;;chr18:14130694..14130697,-!p2@Zfp521!0.36!4.15!Zfp521;;chr7:50817661..50817687,+!p2@LOC100505180,p2@Zfp658!0.36!3.90!Zfp658;;chr11:18918982..18918993,-!p5@Meis1!0.36!3.64!Meis1;;chr17:27693865..27693877,+!p8@Hmga1-rs1,p9@Hmga1!0.36!2.64!Hmga1;;chr9:20385789..20385803,+!p5@Zfp846!0.36!1.76!Zfp846;;chr13:29045274..29045293,-!p6@Sox4!0.36!1.76!Sox4;;chr11:44431191..44431205,+!p11@Ebf1!0.36!1.51!Ebf1;;chr10:75384307..75384370,-!p1@Smarcb1!0.35!156.57!Smarcb1;;chr7:134170081..134170122,-!p2@Maz!0.35!36.94!Maz;;chr17:33766023..33766059,+!p1@Zfp414!0.35!30.28!Zfp414;;chrX:35542957..35543003,+!p1@Zbtb33!0.35!20.23!Zbtb33;;chrX:103124643..103124660,-!p2@Atrx!0.35!13.07!Atrx;;chr1:162964925..162964963,-!p1@Zbtb37!0.35!12.57!Zbtb37;;chr2:128769721..128769770,-!p1@Zc3h8!0.35!7.29!Zc3h8;;chr7:87171233..87171255,+!p3@Zfp710!0.35!4.90!Zfp710;;chr18:36441119..36441158,+!p2@Pura!0.35!4.27!Pura;;chr4:48058047..48058062,+!p1@Nr4a3!0.35!2.39!Nr4a3;;chr11:11584970..11585030,+!p2@Ikzf1!0.35!2.14!Ikzf1;;chr11:18918406..18918431,-!p6@Meis1!0.35!2.01!Meis1;;chr4:154010228..154010244,-!p4@Prdm16!0.35!2.01!Prdm16;;chr1:64168030..64168037,-!p9@Klf7!0.35!1.88!Klf7;;chr3:95032515..95032553,-!p5@Mllt11!0.35!1.63!Mllt11;;chr2:71366714..71366725,+!p12@Dlx1!0.35!1.26!Dlx1;;chr2:71384541..71384555,-!p6@Dlx2!0.35!1.26!Dlx2;;chr3:17954392..17954407,+!p2@Bhlhe22!0.35!1.26!Bhlhe22;;chr4:107353480..107353492,-!p9@Dmrtb1!0.35!1.26!Dmrtb1;;chr2:115884524..115884535,-!p27@Meis2!0.35!1.26!Meis2;;chr19:55969887..55969904,+!p9@Tcf7l2!0.35!1.26!Tcf7l2;;chr5:24104452..24104472,-!p11@Smarcd3!0.35!1.26!Smarcd3;;chr6:14851377..14851396,+!p10@Foxp2!0.35!1.26!Foxp2;;chr6:144157991..144158007,-!p9@Sox5!0.35!1.26!Sox5;;chr15:76353029..76353038,-!p6@Scrt1!0.35!1.26!Scrt1;;chr13:78339241..78339273,-!p9@Nr2f1!0.35!1.26!Nr2f1;;chr12:120085700..120085711,+!p1@Sp8!0.35!1.26!Sp8;;chr13:29045308..29045318,-!p10@Sox4!0.35!1.26!Sox4;;chr13:95645580..95645598,+!p1@Otp!0.35!1.26!Otp;;chr12:57636178..57636194,-!p2@Nkx2-1!0.35!1.26!Nkx2-1;;chr12:28027256..28027282,-!p2@Sox11!0.35!1.26!Sox11;;chr11:44431053..44431060,+!p14@Ebf1!0.35!1.26!Ebf1;;chr17:57074836..57074927,-!p1@Mllt1!0.34!53.53!Mllt1;;chr8:13869673..13869740,+!p1@Zfp828!0.34!46.62!Zfp828;;chr10:76424613..76424689,-!p1@Pcbp3!0.34!42.09!Pcbp3;;chr2:84877369..84877459,+!p1@Ssrp1!0.34!41.21!Ssrp1;;chr14:99697871..99697934,+!p1@Klf5!0.34!39.20!Klf5;;chr7:13595144..13595205,-!p1@Zbtb45!0.34!38.20!Zbtb45;;chr7:48888915..48888973,+!p1@Zfp788!0.34!24.75!Zfp788;;chr1:33871252..33871313,-!p2@Zfp451!0.34!23.50!Zfp451;;chr12:39506873..39506913,+!p1@Etv1!0.34!19.98!Etv1;;chr4:142802594..142802631,-!p1@Prdm2!0.34!19.10!Prdm2;;chr4:118967125..118967143,-!p2@Ybx1!0.34!11.94!Ybx1;;chr16:55973950..55973977,+!p4@Rpl24,p4@Zbtb11!0.34!8.54!Zbtb11;;chr1:64167851..64167886,-!p3@Klf7!0.34!7.79!Klf7;;chr7:148513599..148513636,-!p3@Deaf1!0.34!7.16!Deaf1;;chr1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;chr11:59285934..59285962,-!p1@Zfp867!0.28!5.65!Zfp867;;chr15:103170533..103170556,-!p1@Zfp385a!0.28!5.65!Zfp385a;;chr4:149862477..149862553,+!p3@Rere!0.28!5.40!Rere;;chr14:65568469..65568511,-!p2@Hmbox1!0.28!4.90!Hmbox1;;chr14:52898807..52898863,+!p2@Tox4!0.28!4.27!Tox4;;chr2:166888481..166888548,-!p3@Znfx1!0.28!3.90!Znfx1;;chr8:111227493..111227517,+!p@chr8:111227493..111227517,+!0.28!2.26!Zfhx3;;chr7:134169648..134169657,-!p14@Maz!0.28!1.63!Maz;;chr18:69753168..69753186,+!p12@Tcf4!0.28!1.51!Tcf4;;chr4:129118044..129118067,-!p1@Zbtb8b!0.28!1.38!Zbtb8b;;chr1:140739014..140739032,-!p1@Lhx9!0.28!1.38!Lhx9;;chr2:168032563..168032642,-!p2@Adnp!0.27!100.15!Adnp;;chr17:13897509..13897607,+!p1@Mllt4!0.27!48.88!Mllt4;;chr9:20757282..20757325,-!p2@Dnmt1!0.27!39.08!Dnmt1;;chr19:47125313..47125405,-!p1@Pcgf6!0.27!36.19!Pcgf6;;chr2:17986272..17986332,+!p2@Mllt10!0.27!17.09!Mllt10;;chr5:146041333..146041379,+!p@chr5:146041333..146041379,+!0.27!12.44!Zfp498;;chr2:164860321..164860359,-!p2@Ncoa5!0.27!11.06!Ncoa5;;chr3:52072315..52072327,+!p2@Foxo1!0.27!9.80!Foxo1;;chr7:30644985..30645072,+!p1@Zfp420!0.27!9.17!Zfp420;;chr17:34784132..34784161,+!p1@Atf6b!0.27!8.92!Atf6b;;chr10:79017833..79017871,-!p1@Mier2!0.27!8.92!Mier2;;chr7:134170660..134170711,-!p6@Maz!0.27!8.80!Maz;;chr12:119539843..119539899,-!p1@Sp4!0.27!8.54!Sp4;;chr13:44826095..44826185,+!p4@Jarid2!0.27!7.79!Jarid2;;chr5:147760305..147760324,+!p2@Gtf3a!0.27!7.41!Gtf3a;;chr7:7124057..7124084,+!p1@Zfp418!0.27!5.15!Zfp418;;chr8:83262929..83262957,-!p1@Smarca5!0.27!3.90!Smarca5;;chr8:74405860..74405905,+!p2@Zfp709!0.27!3.02!Zfp709;;chr11:18918820..18918831,-!p4@Meis1!0.27!2.39!Meis1;;chr5:147760331..147760336,+!p5@Gtf3a!0.27!2.01!Gtf3a;;chr7:134376558..134376587,+!p2@Zfp553!0.27!2.01!Zfp553;;chr5:9161608..9161619,-!p3@Dmtf1!0.27!1.88!Dmtf1;;chr7:17199962..17199972,-!p7@Grlf1!0.27!1.76!Grlf1;;chr7:6315994..6316007,+!p2@Zfp78!0.27!1.38!Zfp78;;chr18:14131020..14131033,-!p4@Zfp521!0.27!1.38!Zfp521;;chrX:110411840..110411860,+!p1@Dach2!0.27!1.26!Dach2;;chr9:96631780..96631791,-!p13@Zbtb38!0.27!0.88!Zbtb38;;chr9:91263879..91263911,+!p1@Zic4!0.27!0.88!Zic4;;chr13:78338057..78338069,-!p11@Nr2f1!0.27!0.88!Nr2f1;;chr13:42147117..42147142,+!p3@Hivep1!0.27!0.88!Hivep1;;chr12:50483778..50483789,+!p6@Foxg1!0.27!0.88!Foxg1;;chr4:107353563..107353590,-!p6@Dmrtb1!0.27!0.88!Dmrtb1;;chr4:97248607..97248649,+!p15@Nfia!0.27!0.88!Nfia;;chr2:151907110..151907126,+!p6@Scrt2!0.27!0.88!Scrt2;;chr19:59533163..59533185,+!p3@Emx2!0.27!0.88!Emx2;;chr1:179372514..179372525,+!p7@Zfp238!0.27!0.88!Zfp238;;chr2:31495237..31495243,+!p1@Prdm12!0.27!0.88!Prdm12;;chr2:105515793..105515808,+!p3@Pax6!0.27!0.88!Pax6;;chr5:122500227..122500240,-!p6@Cux2!0.27!0.88!Cux2;;chr6:23198371..23198390,-!p1@Fezf1!0.27!0.88!Fezf1;;chr5:120881900..120881914,+!p1@Lhx5!0.27!0.88!Lhx5;;chr5:138199481..138199491,+!p16@Tsc22d4!0.27!0.88!Tsc22d4;;chr2:156022443..156022511,+!p1@Phf20!0.26!42.09!Phf20;;chr3:54611692..54611726,-!p1@Rfxap!0.26!37.82!Rfxap;;chr2:114027152..114027181,-!p1@Zfp770!0.26!28.15!Zfp770;;chr7:25862248..25862354,+!p1@Zfp574!0.26!26.14!Zfp574;;chr6:64992801..64992894,+!p2@Smarcad1!0.26!23.37!Smarcad1;;chr9:20385951..20386032,+!p1@Zfp846!0.26!12.69!Zfp846;;chr3:54611674..54611690,-!p2@Rfxap!0.26!11.43!Rfxap;;chr9:31088110..31088151,+!p1@Prdm10!0.26!10.81!Prdm10;;chr16:17233653..17233683,+!p1@Hic2!0.26!9.80!Hic2;;chr19:5610038..5610066,-!p1@Kat5!0.26!7.16!Kat5;;chr3:32409460..32409483,+!p2@Zfp639!0.26!7.04!Zfp639;;chr6:47827619..47827639,+!p2@Zfp282!0.26!6.28!Zfp282;;chr11:97524415..97524455,+!p2@Mllt6!0.26!5.65!Mllt6;;chr4:62626594..62626651,+!p1@Zfp618!0.26!5.53!Zfp618;;chr18:69753108..69753139,+!p8@Tcf4!0.26!2.51!Tcf4;;chr2:160698668..160698679,-!p4@Zhx3!0.26!2.26!Zhx3;;chr10:82226709..82226720,-!p6@Nfyb!0.26!1.88!Nfyb;;chr7:19895384..19895399,-!p2@Fosb!0.26!1.51!Fosb;;chrX:103070960..103070973,-!p7@Atrx!0.26!1.38!Atrx;;chr2:77654815..77654872,-!p2@Zfp385b!0.26!1.26!Zfp385b;;
+|ffid_belonging_in_development=UBERON:0010082,UBERON:0002532,UBERON:0006601,UBERON:0010316,FF:0000294
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 40: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011392
 |is_obsolete=
+|library_id=CNhs11226
+|library_id_phase_based=2:CNhs11226
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;630
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;630
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/corpus%2520striatum%252c%2520neonate%2520N00.CNhs11226.630-43F1.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/corpus%2520striatum%252c%2520neonate%2520N00.CNhs11226.630-43F1.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/corpus%2520striatum%252c%2520neonate%2520N00.CNhs11226.630-43F1.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/corpus%2520striatum%252c%2520neonate%2520N00.CNhs11226.630-43F1.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/corpus%2520striatum%252c%2520neonate%2520N00.CNhs11226.630-43F1.mm9.nobarcode.rdna.fa.gz
 |name=corpus striatum, neonate N00
 |namespace=FANTOM5
@@ Line 45: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11226,LSID748,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=0.232596887788275,0,0,0,0,0,0.0636063718942935,0,0,0,0,-0.0329341855959991,0,0,0,0,0,0,0.136667511062226,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.507017737523489,0,0,0,0,0.0506356853862185,-0.0150350720441394,0.24481949297076,-0.0789110065822121,0.615968351818638,1.20029976159204,0,0,0,0,0,0,0,0,0,0,0,0.0514050548005424,-0.0660055475634404,0,0,0,0,0.00855809971766765,0,0,0,0,0.00807770958687442,0.097077728472905,-0.0666393633677863,0.798167625837768,0.101582447474758,0,-0.000839395475789512,0.196358952336672,0.152352256509348,0,0,0.192805681080811,0.164143287698189,-0.218937048158139,-0.0788315948399074,0.0353360586970623,0,0,0,0,0,-0.116341075691942,-0.0773456264564083,-0.138237029387537,0,0,0.0514050548005424,0,0
 |rna_box=43
 |rna_catalog_number=
@@ Line 60: / Line 76: @@
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 80: / Line 97: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:630-43F1;search_select_hide=table117:630-43F1
 }}

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FF:630-43F1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:18, 4 June 2020

CNhs11226

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0