FFCP PHASE1:Mm9::chr3:34549096..34549111,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20674 | |EntrezGene=20674 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1685 | |MCL_coexpression_id=1685 | ||
|TSSclassifier=NA | |||
|UniProt=Q60I23 | |UniProt=Q60I23 | ||
|association_with_transcript=38bp_to_ENSMUST00000171472_5end | |association_with_transcript=38bp_to_ENSMUST00000171472_5end | ||
|cluster_id=chr3:34549096..34549111,+ | |||
|description=CAGE_peak_3_at_Sox2_5end | |description=CAGE_peak_3_at_Sox2_5end | ||
|id=chr3:34549096..34549111,+ | |id=chr3:34549096..34549111,+ | ||
|ontology_enrichment_celltype=CL:0000221!4.26e-26!44;CL:0000133!4.26e-26!44;CL:0002319!2.36e-25!43;CL:0000055!4.31e-19!50;CL:0000540!1.80e-17!33;CL:0000047!1.80e-17!33;CL:0000031!1.80e-17!33;CL:0000404!1.80e-17!33;CL:0000117!2.66e-16!23;CL:0000337!2.66e-16!23;CL:0000393!1.11e-12!39;CL:0000211!1.11e-12!39;CL:0002321!1.69e-11!70;CL:0000220!1.69e-11!70;CL:0000333!8.11e-09!10;CL:0000095!8.11e-09!10;CL:0000243!8.11e-09!10;CL:0000123!8.11e-09!10;CL:0000125!8.11e-09!10;CL:0000030!8.11e-09!10;CL:0000339!8.11e-09!10;CL:0002453!1.39e-07!8 | |ontology_enrichment_celltype=CL:0000221!4.26e-26!44;CL:0000133!4.26e-26!44;CL:0002319!2.36e-25!43;CL:0000055!4.31e-19!50;CL:0000540!1.80e-17!33;CL:0000047!1.80e-17!33;CL:0000031!1.80e-17!33;CL:0000404!1.80e-17!33;CL:0000117!2.66e-16!23;CL:0000337!2.66e-16!23;CL:0000393!1.11e-12!39;CL:0000211!1.11e-12!39;CL:0002321!1.69e-11!70;CL:0000220!1.69e-11!70;CL:0000333!8.11e-09!10;CL:0000095!8.11e-09!10;CL:0000243!8.11e-09!10;CL:0000123!8.11e-09!10;CL:0000125!8.11e-09!10;CL:0000030!8.11e-09!10;CL:0000339!8.11e-09!10;CL:0002453!1.39e-07!8 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.36e-26,44;CL:0000133,1.36e-26,44;CL:0002319,1.66e-25,43;CL:0000117,9.79e-24,23;CL:0000337,9.79e-24,23;CL:0000540,1.22e-15,33;CL:0000047,1.22e-15,33;CL:0000031,1.22e-15,33;CL:0000404,1.22e-15,33;CL:0002321,1.12e-13,70;CL:0000393,3.79e-12,39;CL:0000211,3.79e-12,39;CL:0000333,1.92e-11,10;CL:0000095,1.92e-11,10;CL:0000243,1.92e-11,10;CL:0000123,1.92e-11,10;CL:0000125,1.92e-11,10;CL:0000030,1.92e-11,10;CL:0000339,1.92e-11,10;CL:0002453,1.92e-09,8;CL:0002609,8.73e-09,6;CL:0000128,9.69e-07,6;CL:0000126,9.69e-07,6;CL:0000127,9.69e-07,6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.86e-47!75;UBERON:0001016!1.86e-47!75;UBERON:0001017!9.17e-46!73;UBERON:0005743!9.17e-46!73;UBERON:0004121!1.43e-37!102;UBERON:0000924!1.43e-37!102;UBERON:0006601!1.43e-37!102;UBERON:0001049!3.72e-34!52;UBERON:0005068!3.72e-34!52;UBERON:0006241!3.72e-34!52;UBERON:0007135!3.72e-34!52;UBERON:0000955!4.95e-33!50;UBERON:0006238!4.95e-33!50;UBERON:0000033!1.14e-32!63;UBERON:0002616!2.45e-32!49;UBERON:0002346!1.01e-28!71;UBERON:0003075!1.01e-28!71;UBERON:0007284!1.01e-28!71;UBERON:0003080!1.66e-26!40;UBERON:0002780!8.84e-26!39;UBERON:0001890!8.84e-26!39;UBERON:0006240!8.84e-26!39;UBERON:0003056!2.28e-25!49;UBERON:0002020!3.10e-23!34;UBERON:0002791!4.32e-20!29;UBERON:0003528!4.32e-20!29;UBERON:0001893!4.32e-20!29;UBERON:0007811!1.25e-17!86;UBERON:0000956!3.40e-15!21;UBERON:0001869!3.40e-15!21;UBERON:0000203!3.40e-15!21;UBERON:0000153!4.21e-14!94;UBERON:0002619!2.65e-12!17;UBERON:0004111!2.37e-08!122;UBERON:0000025!3.14e-08!114;UBERON:0003076!6.95e-08!12;UBERON:0003057!6.95e-08!12;UBERON:0002021!1.83e-07!10;UBERON:0000411!1.83e-07!10;UBERON:0001950!1.83e-07!10 | |ontology_enrichment_uberon=UBERON:0000073!1.86e-47!75;UBERON:0001016!1.86e-47!75;UBERON:0001017!9.17e-46!73;UBERON:0005743!9.17e-46!73;UBERON:0004121!1.43e-37!102;UBERON:0000924!1.43e-37!102;UBERON:0006601!1.43e-37!102;UBERON:0001049!3.72e-34!52;UBERON:0005068!3.72e-34!52;UBERON:0006241!3.72e-34!52;UBERON:0007135!3.72e-34!52;UBERON:0000955!4.95e-33!50;UBERON:0006238!4.95e-33!50;UBERON:0000033!1.14e-32!63;UBERON:0002616!2.45e-32!49;UBERON:0002346!1.01e-28!71;UBERON:0003075!1.01e-28!71;UBERON:0007284!1.01e-28!71;UBERON:0003080!1.66e-26!40;UBERON:0002780!8.84e-26!39;UBERON:0001890!8.84e-26!39;UBERON:0006240!8.84e-26!39;UBERON:0003056!2.28e-25!49;UBERON:0002020!3.10e-23!34;UBERON:0002791!4.32e-20!29;UBERON:0003528!4.32e-20!29;UBERON:0001893!4.32e-20!29;UBERON:0007811!1.25e-17!86;UBERON:0000956!3.40e-15!21;UBERON:0001869!3.40e-15!21;UBERON:0000203!3.40e-15!21;UBERON:0000153!4.21e-14!94;UBERON:0002619!2.65e-12!17;UBERON:0004111!2.37e-08!122;UBERON:0000025!3.14e-08!114;UBERON:0003076!6.95e-08!12;UBERON:0003057!6.95e-08!12;UBERON:0002021!1.83e-07!10;UBERON:0000411!1.83e-07!10;UBERON:0001950!1.83e-07!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.71e-59,75;UBERON:0001017,1.77e-56,73;UBERON:0000073,1.68e-53,54;UBERON:0001049,8.48e-51,52;UBERON:0005068,8.48e-51,52;UBERON:0006241,8.48e-51,52;UBERON:0007135,8.48e-51,52;UBERON:0000955,7.96e-47,47;UBERON:0006238,7.96e-47,47;UBERON:0004121,3.08e-46,95;UBERON:0000924,3.08e-46,95;UBERON:0006601,3.08e-46,95;UBERON:0002616,1.01e-45,46;UBERON:0003080,6.75e-42,40;UBERON:0002780,1.02e-40,39;UBERON:0001890,1.02e-40,39;UBERON:0006240,1.02e-40,39;UBERON:0002346,1.99e-38,64;UBERON:0003075,1.99e-38,64;UBERON:0007284,1.99e-38,64;UBERON:0002020,6.14e-35,34;UBERON:0010371,1.35e-33,73;UBERON:0003056,7.11e-32,49;UBERON:0003528,1.71e-31,29;UBERON:0002791,1.71e-31,29;UBERON:0001893,1.71e-31,29;UBERON:0010314,1.29e-24,92;UBERON:0000956,1.45e-23,21;UBERON:0001869,1.45e-23,21;UBERON:0000203,1.45e-23,21;UBERON:0002619,6.87e-19,17;UBERON:0011216,3.51e-17,194;UBERON:0000025,3.80e-15,114;UBERON:0004111,6.55e-15,122;UBERON:0002021,4.32e-11,10;UBERON:0000411,4.32e-11,10;UBERON:0001950,4.32e-11,10;UBERON:0001894,1.13e-09,10;UBERON:0006222,1.13e-09,10;UBERON:0001954,3.23e-09,7;UBERON:0003022,3.23e-09,7;UBERON:0002421,3.23e-09,7;UBERON:0000349,3.23e-09,7;UBERON:0002600,3.23e-09,7;UBERON:0003076,6.85e-09,12;UBERON:0003057,6.85e-09,12;UBERON:0002420,6.97e-09,8;UBERON:0007245,6.97e-09,8;UBERON:0010009,6.97e-09,8;UBERON:0010011,6.97e-09,8;UBERON:0000454,6.97e-09,8;UBERON:0000007,8.21e-08,8;UBERON:0003296,8.21e-08,8;UBERON:0010133,8.21e-08,8 | |||
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| ||
|short_description=p3@Sox2 | |short_description=p3@Sox2 | ||
}} | }} |
Latest revision as of 23:14, 1 October 2015
Short description: | p3@Sox2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Sox2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1685 |
Association with transcript: | 38bp_to_ENSMUST00000171472_5end |
EntrezGene: | Sox2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.36e-26 | 44 |
neurectodermal cell | 1.36e-26 | 44 |
neural cell | 1.66e-25 | 43 |
CNS neuron (sensu Vertebrata) | 9.79e-24 | 23 |
neuroblast (sensu Vertebrata) | 9.79e-24 | 23 |
neuron | 1.22e-15 | 33 |
neuronal stem cell | 1.22e-15 | 33 |
neuroblast | 1.22e-15 | 33 |
electrically signaling cell | 1.22e-15 | 33 |
embryonic cell | 1.12e-13 | 70 |
electrically responsive cell | 3.79e-12 | 39 |
electrically active cell | 3.79e-12 | 39 |
migratory neural crest cell | 1.92e-11 | 10 |
neuron associated cell | 1.92e-11 | 10 |
glial cell (sensu Vertebrata) | 1.92e-11 | 10 |
neuron associated cell (sensu Vertebrata) | 1.92e-11 | 10 |
glial cell | 1.92e-11 | 10 |
glioblast | 1.92e-11 | 10 |
glioblast (sensu Vertebrata) | 1.92e-11 | 10 |
oligodendrocyte precursor cell | 1.92e-09 | 8 |
neuron of cerebral cortex | 8.73e-09 | 6 |
oligodendrocyte | 9.69e-07 | 6 |
macroglial cell | 9.69e-07 | 6 |
astrocyte | 9.69e-07 | 6 |