FFCP PHASE1:Mm9::chr3:34548845..34548856,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20674 | |EntrezGene=20674 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=3407 | |MCL_coexpression_id=3407 | ||
|TSSclassifier=NA | |||
|UniProt=Q60I23,P48432,Q3V2B6 | |UniProt=Q60I23,P48432,Q3V2B6 | ||
|association_with_transcript=-70bp_to_ENSMUST00000099151,NM_011443,uc008oxu.1_5end | |association_with_transcript=-70bp_to_ENSMUST00000099151,NM_011443,uc008oxu.1_5end | ||
|cluster_id=chr3:34548845..34548856,+ | |||
|description=CAGE_peak_4_at_Sox2_5end | |description=CAGE_peak_4_at_Sox2_5end | ||
|id=chr3:34548845..34548856,+ | |id=chr3:34548845..34548856,+ | ||
|ontology_enrichment_celltype=CL:0000221!5.14e-27!44;CL:0000133!5.14e-27!44;CL:0002319!4.65e-26!43;CL:0000540!5.89e-20!33;CL:0000047!5.89e-20!33;CL:0000031!5.89e-20!33;CL:0000404!5.89e-20!33;CL:0000055!8.78e-20!50;CL:0000393!1.02e-14!39;CL:0000211!1.02e-14!39;CL:0000117!4.49e-14!23;CL:0000337!4.49e-14!23;CL:0002321!6.93e-13!70;CL:0000220!6.93e-13!70;CL:0000333!7.26e-07!10;CL:0000095!7.26e-07!10;CL:0000243!7.26e-07!10;CL:0000123!7.26e-07!10;CL:0000125!7.26e-07!10;CL:0000030!7.26e-07!10;CL:0000339!7.26e-07!10 | |ontology_enrichment_celltype=CL:0000221!5.14e-27!44;CL:0000133!5.14e-27!44;CL:0002319!4.65e-26!43;CL:0000540!5.89e-20!33;CL:0000047!5.89e-20!33;CL:0000031!5.89e-20!33;CL:0000404!5.89e-20!33;CL:0000055!8.78e-20!50;CL:0000393!1.02e-14!39;CL:0000211!1.02e-14!39;CL:0000117!4.49e-14!23;CL:0000337!4.49e-14!23;CL:0002321!6.93e-13!70;CL:0000220!6.93e-13!70;CL:0000333!7.26e-07!10;CL:0000095!7.26e-07!10;CL:0000243!7.26e-07!10;CL:0000123!7.26e-07!10;CL:0000125!7.26e-07!10;CL:0000030!7.26e-07!10;CL:0000339!7.26e-07!10 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,7.08e-33,44;CL:0000133,7.08e-33,44;CL:0002319,3.22e-31,43;CL:0000540,1.85e-21,33;CL:0000047,1.85e-21,33;CL:0000031,1.85e-21,33;CL:0000404,1.85e-21,33;CL:0002321,5.23e-21,70;CL:0000393,3.82e-17,39;CL:0000211,3.82e-17,39;CL:0000117,1.61e-15,23;CL:0000337,1.61e-15,23;CL:0000333,1.65e-10,10;CL:0000095,1.65e-10,10;CL:0000243,1.65e-10,10;CL:0000123,1.65e-10,10;CL:0000125,1.65e-10,10;CL:0000030,1.65e-10,10;CL:0000339,1.65e-10,10;CL:0000107,6.85e-08,9;CL:0002453,1.10e-07,8;CL:0002609,6.90e-07,6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.32e-37!75;UBERON:0001016!2.32e-37!75;UBERON:0004121!1.62e-35!102;UBERON:0000924!1.62e-35!102;UBERON:0006601!1.62e-35!102;UBERON:0001017!1.65e-35!73;UBERON:0005743!1.65e-35!73;UBERON:0000033!7.56e-27!63;UBERON:0002346!5.79e-25!71;UBERON:0003075!5.79e-25!71;UBERON:0007284!5.79e-25!71;UBERON:0001049!4.20e-22!52;UBERON:0005068!4.20e-22!52;UBERON:0006241!4.20e-22!52;UBERON:0007135!4.20e-22!52;UBERON:0003056!1.24e-21!49;UBERON:0000955!2.23e-19!50;UBERON:0006238!2.23e-19!50;UBERON:0002616!1.34e-18!49;UBERON:0002020!1.06e-16!34;UBERON:0003080!1.68e-16!40;UBERON:0002780!2.62e-16!39;UBERON:0001890!2.62e-16!39;UBERON:0006240!2.62e-16!39;UBERON:0007811!1.08e-13!86;UBERON:0002791!1.45e-13!29;UBERON:0003528!1.45e-13!29;UBERON:0001893!1.45e-13!29;UBERON:0000153!2.69e-11!94;UBERON:0000956!1.81e-08!21;UBERON:0001869!1.81e-08!21;UBERON:0000203!1.81e-08!21;UBERON:0000010!4.31e-08!11;UBERON:0000020!1.70e-07!12;UBERON:0001032!1.70e-07!12;UBERON:0004456!1.70e-07!12 | |ontology_enrichment_uberon=UBERON:0000073!2.32e-37!75;UBERON:0001016!2.32e-37!75;UBERON:0004121!1.62e-35!102;UBERON:0000924!1.62e-35!102;UBERON:0006601!1.62e-35!102;UBERON:0001017!1.65e-35!73;UBERON:0005743!1.65e-35!73;UBERON:0000033!7.56e-27!63;UBERON:0002346!5.79e-25!71;UBERON:0003075!5.79e-25!71;UBERON:0007284!5.79e-25!71;UBERON:0001049!4.20e-22!52;UBERON:0005068!4.20e-22!52;UBERON:0006241!4.20e-22!52;UBERON:0007135!4.20e-22!52;UBERON:0003056!1.24e-21!49;UBERON:0000955!2.23e-19!50;UBERON:0006238!2.23e-19!50;UBERON:0002616!1.34e-18!49;UBERON:0002020!1.06e-16!34;UBERON:0003080!1.68e-16!40;UBERON:0002780!2.62e-16!39;UBERON:0001890!2.62e-16!39;UBERON:0006240!2.62e-16!39;UBERON:0007811!1.08e-13!86;UBERON:0002791!1.45e-13!29;UBERON:0003528!1.45e-13!29;UBERON:0001893!1.45e-13!29;UBERON:0000153!2.69e-11!94;UBERON:0000956!1.81e-08!21;UBERON:0001869!1.81e-08!21;UBERON:0000203!1.81e-08!21;UBERON:0000010!4.31e-08!11;UBERON:0000020!1.70e-07!12;UBERON:0001032!1.70e-07!12;UBERON:0004456!1.70e-07!12 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,8.07e-34,95;UBERON:0000924,8.07e-34,95;UBERON:0006601,8.07e-34,95;UBERON:0001016,5.81e-33,75;UBERON:0001017,3.25e-30,73;UBERON:0002346,1.01e-22,64;UBERON:0003075,1.01e-22,64;UBERON:0007284,1.01e-22,64;UBERON:0010371,2.29e-20,73;UBERON:0002020,6.92e-20,34;UBERON:0003528,1.95e-17,29;UBERON:0002791,1.95e-17,29;UBERON:0001893,1.95e-17,29;UBERON:0003056,2.21e-17,49;UBERON:0001049,3.60e-17,52;UBERON:0005068,3.60e-17,52;UBERON:0006241,3.60e-17,52;UBERON:0007135,3.60e-17,52;UBERON:0000955,2.46e-16,47;UBERON:0006238,2.46e-16,47;UBERON:0000073,2.99e-16,54;UBERON:0002616,3.47e-15,46;UBERON:0002780,3.55e-14,39;UBERON:0001890,3.55e-14,39;UBERON:0006240,3.55e-14,39;UBERON:0010314,3.58e-14,92;UBERON:0003080,1.12e-13,40;UBERON:0001954,1.78e-11,7;UBERON:0003022,1.78e-11,7;UBERON:0002421,1.78e-11,7;UBERON:0000349,1.78e-11,7;UBERON:0002600,1.78e-11,7;UBERON:0000010,1.14e-10,11;UBERON:0000956,7.57e-10,21;UBERON:0001869,7.57e-10,21;UBERON:0000203,7.57e-10,21;UBERON:0002420,1.33e-09,8;UBERON:0007245,1.33e-09,8;UBERON:0010009,1.33e-09,8;UBERON:0010011,1.33e-09,8;UBERON:0000454,1.33e-09,8;UBERON:0000369,6.40e-09,5;UBERON:0002435,6.40e-09,5;UBERON:0000204,6.40e-09,5;UBERON:0010082,6.40e-09,5;UBERON:0011216,6.45e-09,194;UBERON:0002410,6.85e-08,9;UBERON:0002619,8.92e-08,17 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39827672018491,1.75748946187577,1.55543919259427,0.839918529752175,4.31257693094915,0,0,0,0,0,0,2.63011399117477,2.11596391708813,1.26766280701236,1.0165335962074,0,0,0,0,5.09320187881288,5.76327457982332,1.14058573539325,0.675029691658453,1.05162480675691,3.14216082844184,2.87129103237098,3.30725157880376,4.31304619582064,3.67687514644008,0,0.766124028511126,0.768032666281217,3.82470234417562,3.7509933876988,6.77187381723788,1.67509799400829,1.12552522006336,0.61119299110724,0.589257170947335,2.42031857358475,0.931997229126503,2.27178579999552,3.32514864469856,0,0,0,0,0,0,0,0,0,0,5.49289337129054,0,0,0,1.08245520505607,1.01343946190039,1.01104889002957,0,0,0,0,0,0,0.150722640552623,0,0,0,0.144599356919912,0,0,0,0,0,1.17112318804619,0.83778682725382,0,0,0,0,0.299581278809645,1.37250180845588,1.50785222535437,1.21677024134594,0.255715457330331,0.20778804455956,0.486723789203273,0,0,0,0.420883711772948,0.910843100738926,0.459804208866946,1.44049703844279,2.56198190320716,3.06164246180975,5.89323113310309,2.90475346135159,0.258703370739016,0,0,0.175951124163949,0,0,0,0,0,0,0,0,0,0,0.180062061461015,0,0,0,0,0,0,0,0,0,0,0,0,1.47202963994889,1.9551876352064,0,0,0,0,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0.37898282354097,0,0.169745085775188,0.234690248288502,0.335012514883631,0.238043640886014,0,0.157635144106191,0,0,0,0.172684981865896,0,0,0,0,0,0.481651769963376,1.52375192569864,0,0,1.26203287766503,0.780877488593277,1.93881057959519,1.91175038362042,1.78238939265915,2.54768877709949,0.404810701674894,1.46127928955656,1.58115111178609,2.89189184779626,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,1.02131881726136,1.08036656418786,0.905510786479282,0.857348140126369,0.709360934569094,0.713475270408282,0.658196082408484,0,0,0,0,0,0,0.0603129249281559,0,0,0,0.556275906031529,0,0,0,0,0,0,0,0,0,0,0.316335993581135,0.813277868507395,0.540026704109006,1.25452977608681,0.436725127492355,0.539457385539283,0.247960367176008,0.26175594198403,0,0.621339313086926,0,0.299033092087958,0.165458490457098,0,0.129159823477731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453460767230423,0.887943813496259,0.179427713218951,0.167884616364078,0,0,0,0,0,0,0,1.71868654031819,0.171853182343688,0,0.755393897389701,1.35004500046361,0.900642406448441,0.453142408984205,1.03552062350364,1.24544817101012,1.99512436700516,1.02440163452481,0.243106717068294,0.628839487883947,0.367687016900028,0.222246727801615,0,0.64183841918363,0.252697211763798,0.50695859978048,0.188626341386076,0.0936415074698824,0.192075457214608,0.229741875822453,0,0.347652977834566,0.578727661391115,0,0.588795680537589,0.342869252385415,0.532427418478012,0.238436189947321,0.145346416632329,0.188218760830661,0,0.182927972872773,0.526139422875686,0.543216455383447,0.561142271657738,0.118635018124174,0.197008964751127,0,0.154936841185966,0.385813221962283,0.999242311751784,0.467863216890817,0,0,0,0.231867835620421 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|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39827672018491,1.75748946187577,1.55543919259427,0.839918529752175,4.31257693094915,0,0,0,0,0,0,2.63011399117477,2.11596391708813,1.26766280701236,1.0165335962074,0,0,0,0,5.09320187881288,5.76327457982332,1.14058573539325,0.675029691658453,1.05162480675691,3.14216082844184,2.87129103237098,3.30725157880376,4.31304619582064,3.67687514644008,0,0.766124028511126,0.768032666281217,3.82470234417562,3.7509933876988,6.77187381723788,1.67509799400829,1.12552522006336,0.61119299110724,0.589257170947335,2.42031857358475,0.931997229126503,2.27178579999552,3.32514864469856,0,0,0,0,0,0,0,0,0,0,5.49289337129054,0,0,0,1.08245520505607,1.01343946190039,1.01104889002957,0,0,0,0,0,0,0.150722640552623,0,0,0,0.144599356919912,0,0,0,0,0,1.17112318804619,0.83778682725382,0,0,0,0,0.299581278809645,1.37250180845588,1.50785222535437,1.21677024134594,0.255715457330331,0.20778804455956,0.486723789203273,0,0,0,0.420883711772948,0.910843100738926,0.459804208866946,1.44049703844279,2.56198190320716,3.06164246180975,5.89323113310309,2.90475346135159,0.258703370739016,0,0,0.175951124163949,0,0,0,0,0,0,0,0,0,0,0.180062061461015,0,0,0,0,0,0,0,0,0,0,0,0,1.47202963994889,1.9551876352064,0,0,0,0,0.128867461322093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0.37898282354097,0,0.169745085775188,0.234690248288502,0.335012514883631,0.238043640886014,0,0.157635144106191,0,0,0,0.172684981865896,0,0,0,0,0,0.481651769963376,1.52375192569864,0,0,1.26203287766503,0.780877488593277,1.93881057959519,1.91175038362042,1.78238939265915,2.54768877709949,0.404810701674894,1.46127928955656,1.58115111178609,2.89189184779626,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,1.02131881726136,1.08036656418786,0.905510786479282,0.857348140126369,0.709360934569094,0.713475270408282,0.658196082408484,0,0,0,0,0,0,0.0603129249281559,0,0,0,0.556275906031529,0,0,0,0,0,0,0,0,0,0,0.316335993581135,0.813277868507395,0.540026704109006,1.25452977608681,0.436725127492355,0.539457385539283,0.247960367176008,0.26175594198403,0,0.621339313086926,0,0.299033092087958,0.165458490457098,0,0.129159823477731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453460767230423,0.887943813496259,0.179427713218951,0.167884616364078,0,0,0,0,0,0,0,1.71868654031819,0.171853182343688,0,0.755393897389701,1.35004500046361,0.900642406448441,0.453142408984205,1.03552062350364,1.24544817101012,1.99512436700516,1.02440163452481,0.243106717068294,0.628839487883947,0.367687016900028,0.222246727801615,0,0.64183841918363,0.252697211763798,0.50695859978048,0.188626341386076,0.0936415074698824,0.192075457214608,0.229741875822453,0,0.347652977834566,0.578727661391115,0,0.588795680537589,0.342869252385415,0.532427418478012,0.238436189947321,0.145346416632329,0.188218760830661,0,0.182927972872773,0.526139422875686,0.543216455383447,0.561142271657738,0.118635018124174,0.197008964751127,0,0.154936841185966,0.385813221962283,0.999242311751784,0.467863216890817,0,0,0,0.231867835620421 | ||
|short_description=p4@Sox2 | |short_description=p4@Sox2 | ||
}} | }} |
Latest revision as of 23:14, 1 October 2015
Short description: | p4@Sox2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Sox2_5end |
Coexpression cluster: | MCL_coexpression_mm9:3407 |
Association with transcript: | -70bp_to_ENSMUST00000099151, NM_011443, uc008oxu.1_5end |
EntrezGene: | Sox2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 7.08e-33 | 44 |
neurectodermal cell | 7.08e-33 | 44 |
neural cell | 3.22e-31 | 43 |
neuron | 1.85e-21 | 33 |
neuronal stem cell | 1.85e-21 | 33 |
neuroblast | 1.85e-21 | 33 |
electrically signaling cell | 1.85e-21 | 33 |
embryonic cell | 5.23e-21 | 70 |
electrically responsive cell | 3.82e-17 | 39 |
electrically active cell | 3.82e-17 | 39 |
CNS neuron (sensu Vertebrata) | 1.61e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.61e-15 | 23 |
migratory neural crest cell | 1.65e-10 | 10 |
neuron associated cell | 1.65e-10 | 10 |
glial cell (sensu Vertebrata) | 1.65e-10 | 10 |
neuron associated cell (sensu Vertebrata) | 1.65e-10 | 10 |
glial cell | 1.65e-10 | 10 |
glioblast | 1.65e-10 | 10 |
glioblast (sensu Vertebrata) | 1.65e-10 | 10 |
autonomic neuron | 6.85e-08 | 9 |
oligodendrocyte precursor cell | 1.10e-07 | 8 |
neuron of cerebral cortex | 6.90e-07 | 6 |