FFCP PHASE1:Mm9::chr11:59356203..59356228,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=216799 | |EntrezGene=216799 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=296 | |MCL_coexpression_id=296 | ||
|TSSclassifier=NA | |||
|UniProt=Q8R4B8 | |UniProt=Q8R4B8 | ||
|association_with_transcript=15bp_to_ENSMUST00000101147,ENSMUST00000101148,ENSMUST00000108758,NM_145827,uc007jei.1_5end | |association_with_transcript=15bp_to_ENSMUST00000101147,ENSMUST00000101148,ENSMUST00000108758,NM_145827,uc007jei.1_5end | ||
|cluster_id=chr11:59356203..59356228,+ | |||
|description=CAGE_peak_2_at_Nlrp3_5end | |description=CAGE_peak_2_at_Nlrp3_5end | ||
|id=chr11:59356203..59356228,+ | |id=chr11:59356203..59356228,+ | ||
|ontology_enrichment_celltype=CL:0000049!7.33e-08!19 | |ontology_enrichment_celltype=CL:0000049!7.33e-08!19 | ||
|ontology_enrichment_celltype_v019_2=CL:0000049,5.69e-18,19;CL:0000557,5.03e-16,7;CL:0000763,3.73e-11,16;CL:0002320,2.17e-10,46;CL:0000134,2.17e-10,46;CL:0000988,8.59e-10,32;CL:0002032,8.59e-10,32;CL:0000037,8.59e-10,32;CL:0000837,8.59e-10,32;CL:0002092,1.29e-09,3;CL:0002540,1.29e-09,3;CL:0000034,1.35e-08,97;CL:0000219,2.00e-08,54;CL:0002194,2.01e-07,4;CL:0000766,2.01e-07,4;CL:0000234,2.01e-07,4;CL:0000576,2.01e-07,4;CL:0000235,2.01e-07,4;CL:0000864,2.01e-07,4;CL:0002009,2.01e-07,4;CL:0000040,2.01e-07,4;CL:0000559,2.01e-07,4;CL:0002476,2.06e-07,2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2=DOID:0060100,1.38e-09,3;DOID:4045,1.38e-09,3 | |||
|ontology_enrichment_uberon=UBERON:0002371!2.49e-10!16;UBERON:0002405!2.26e-09!70;UBERON:0001474!4.41e-08!22;UBERON:0004765!4.41e-08!22;UBERON:0001434!4.41e-08!22;UBERON:0000926!3.29e-07!193;UBERON:0004120!3.29e-07!193;UBERON:0006603!3.29e-07!193 | |ontology_enrichment_uberon=UBERON:0002371!2.49e-10!16;UBERON:0002405!2.26e-09!70;UBERON:0001474!4.41e-08!22;UBERON:0004765!4.41e-08!22;UBERON:0001434!4.41e-08!22;UBERON:0000926!3.29e-07!193;UBERON:0004120!3.29e-07!193;UBERON:0006603!3.29e-07!193 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.05e-21,16;UBERON:0002204,8.15e-16,32;UBERON:0001474,8.88e-15,22;UBERON:0004765,8.88e-15,22;UBERON:0001434,8.88e-15,22;UBERON:0002193,2.42e-14,48;UBERON:0002405,2.42e-14,48;UBERON:0002390,1.30e-13,45;UBERON:0003061,1.30e-13,45;UBERON:0002106,1.74e-11,6;UBERON:0004457,1.74e-11,6;UBERON:0000042,1.74e-11,6;UBERON:0004854,1.74e-11,6;UBERON:0009034,1.74e-11,6;UBERON:0002095,1.74e-11,6;UBERON:0004782,1.74e-11,6;UBERON:0003281,1.74e-11,6;UBERON:0009664,1.74e-11,6;UBERON:0002296,1.74e-11,6;UBERON:0005602,1.74e-11,6;UBERON:0001179,1.74e-11,6;UBERON:0006293,1.74e-11,6;UBERON:0002384,2.17e-10,46;UBERON:0003887,8.38e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,0.607425802169478,0,1.10411757875383,0.411343300817216,1.27316895539409,0.0850432901510698,0.198581902401771,0,0.319984845586813,0,0,0,0,0,0,0,0,0,0,0,0,0,7.53356935326434,3.906676722619,2.09409497589519,44.7055930903571,18.442228093878,14.0798002379035,0,0,0,0,0,0,0,0,0,0,0.725362142011344,0,0,0,0,0,0,0,0,0,4.04954872776629,5.93319817540185,2.8419204597844,1.19840044207362,0.384218305321555,0,0,0.210324961351382,0,0.220868540951614,0.122490799214954,0,0,0,0.127687338085188,0,0,0,0,0,0.56276261003168,0.15279824777681,0,0,0,0,0,0,0.860423876981386,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,2.07150306917737,0.148442139064825,0,0,0,0,0.470354828542819,0,0,0.289198713839823,0.884610551949874,0,0.662524555381181,0,0,0,0,0,22.8846887806308,8.99854096490112,17.2815508819368,0.149790639404823,0,0,0,0.511430914660661,0,0,0.203678727700633,0.870848794270651,0,0,0,0,0,0,0.0680364991513279,0,0,0.258703370739016,0,0.189106080167819,0,0.219195732427575,0,0,0,0,19.6619692447706,15.4408744268829,17.3339734631312,0.207125772535502,0,0,0.23674473558521,0,0,0,0,0.116765342367169,0,0,0,0,0.219550115291051,0,0.210289948564127,0,0.330418782983798,0.264450566663544,0.426576501070468,0,0.128867461322093,0.201683524623343,0,0,0,0,0,0.198956472041151,0,0,0.216138049874694,0.199141273254367,0,0.114248512609729,0,0,0,0,0.0632365371242573,0.147610147979602,0,0.370191491765402,0.592905254174298,0.166845105716094,0.196558995113203,0,1.01430060694251,0.964708639009667,0.763877555344259,0.863088412352432,0.324270453550071,0.549122826376163,0,0.372140947668503,0.312037673114561,0.252578877947112,0.538192240565737,0.964887042726734,0.554259570499814,0,0,0.169745085775188,0,0.167506257441816,0.476087281772027,0.195133647857799,0.788175720530955,0.664394068946325,0,0.81931657357869,0.863424909329478,0.433947175744535,9.04747703635634,15.2293591469239,0,0,0,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0.425820255624806,0,0.162886959353576,0.164970122972535,0,0.485561272309963,0,0.188605079755898,0,0.307435147943927,0.516856586336442,0.363533729477506,0.356497378384721,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0.21183207086382,0,0,0.161464426695906,0.180938774784468,0,0,0,0,1.19609616558497,1.23832120777933,2.40752885580625,0.941842285023455,1.23024804948923,1.60144721244566,6.62915876976036,5.03825228365169,4.14599921413271,0.954670618015114,0,0.203319467126849,0.432021363287205,0,0,0.404593039154462,0.495920734352016,0,0.259229946583586,0,0,0,0,0,0,0,0.234714477291508,0.2604087696879,0,0,0,0.316011120628178,0,0,0.129920822977795,0,0,0.240390899039938,0,0.100966449948148,0,0,0.194915761479505,0.288635524920988,0.116876902181569,0.226730383615211,0,0,0,0.386379188064381,0.563047426353546,0.36630324853453,0.428736758158132,0,0,0,0,0,0.685082519770642,0,0,0,0,0.51776031175182,0,0,0.170733605754134,0.486213434136588,0.209613162627982,0.183843508450014,0.222246727801615,0.412070114477788,0,0,0,0,0,0.0640251524048693,0.229741875822453,0,0.115884325944855,0,0,0.147198920134397,0.342869252385415,0,0,0,0.188218760830661,0.0846146078916765,0.182927972872773,0,0.135804113845862,0,0.118635018124174,0.197008964751127,0.409231043169689,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,0.607425802169478,0,1.10411757875383,0.411343300817216,1.27316895539409,0.0850432901510698,0.198581902401771,0,0.319984845586813,0,0,0,0,0,0,0,0,0,0,0,0,0,7.53356935326434,3.906676722619,2.09409497589519,44.7055930903571,18.442228093878,14.0798002379035,0,0,0,0,0,0,0,0,0,0,0.725362142011344,0,0,0,0,0,0,0,0,0,4.04954872776629,5.93319817540185,2.8419204597844,1.19840044207362,0.384218305321555,0,0,0.210324961351382,0,0.220868540951614,0.122490799214954,0,0,0,0.127687338085188,0,0,0,0,0,0.56276261003168,0.15279824777681,0,0,0,0,0,0,0.860423876981386,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,2.07150306917737,0.148442139064825,0,0,0,0,0.470354828542819,0,0,0.289198713839823,0.884610551949874,0,0.662524555381181,0,0,0,0,0,22.8846887806308,8.99854096490112,17.2815508819368,0.149790639404823,0,0,0,0.511430914660661,0,0,0.203678727700633,0.870848794270651,0,0,0,0,0,0,0.0680364991513279,0,0,0.258703370739016,0,0.189106080167819,0,0.219195732427575,0,0,0,0,19.6619692447706,15.4408744268829,17.3339734631312,0.207125772535502,0,0,0.23674473558521,0,0,0,0,0.116765342367169,0,0,0,0,0.219550115291051,0,0.210289948564127,0,0.330418782983798,0.264450566663544,0.426576501070468,0,0.128867461322093,0.201683524623343,0,0,0,0,0,0.198956472041151,0,0,0.216138049874694,0.199141273254367,0,0.114248512609729,0,0,0,0,0.0632365371242573,0.147610147979602,0,0.370191491765402,0.592905254174298,0.166845105716094,0.196558995113203,0,1.01430060694251,0.964708639009667,0.763877555344259,0.863088412352432,0.324270453550071,0.549122826376163,0,0.372140947668503,0.312037673114561,0.252578877947112,0.538192240565737,0.964887042726734,0.554259570499814,0,0,0.169745085775188,0,0.167506257441816,0.476087281772027,0.195133647857799,0.788175720530955,0.664394068946325,0,0.81931657357869,0.863424909329478,0.433947175744535,9.04747703635634,15.2293591469239,0,0,0,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0.425820255624806,0,0.162886959353576,0.164970122972535,0,0.485561272309963,0,0.188605079755898,0,0.307435147943927,0.516856586336442,0.363533729477506,0.356497378384721,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0.21183207086382,0,0,0.161464426695906,0.180938774784468,0,0,0,0,1.19609616558497,1.23832120777933,2.40752885580625,0.941842285023455,1.23024804948923,1.60144721244566,6.62915876976036,5.03825228365169,4.14599921413271,0.954670618015114,0,0.203319467126849,0.432021363287205,0,0,0.404593039154462,0.495920734352016,0,0.259229946583586,0,0,0,0,0,0,0,0.234714477291508,0.2604087696879,0,0,0,0.316011120628178,0,0,0.129920822977795,0,0,0.240390899039938,0,0.100966449948148,0,0,0.194915761479505,0.288635524920988,0.116876902181569,0.226730383615211,0,0,0,0.386379188064381,0.563047426353546,0.36630324853453,0.428736758158132,0,0,0,0,0,0.685082519770642,0,0,0,0,0.51776031175182,0,0,0.170733605754134,0.486213434136588,0.209613162627982,0.183843508450014,0.222246727801615,0.412070114477788,0,0,0,0,0,0.0640251524048693,0.229741875822453,0,0.115884325944855,0,0,0.147198920134397,0.342869252385415,0,0,0,0.188218760830661,0.0846146078916765,0.182927972872773,0,0.135804113845862,0,0.118635018124174,0.197008964751127,0.409231043169689,0,0,0,0,0,0,0,0 | ||
|short_description=p2@Nlrp3 | |short_description=p2@Nlrp3 | ||
}} | }} |
Latest revision as of 19:22, 1 October 2015
Short description: | p2@Nlrp3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Nlrp3_5end |
Coexpression cluster: | MCL_coexpression_mm9:296 |
Association with transcript: | 15bp_to_ENSMUST00000101147, ENSMUST00000101148, ENSMUST00000108758, NM_145827, uc007jei.1_5end |
EntrezGene: | Nlrp3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
common myeloid progenitor | 5.69e-18 | 19 |
granulocyte monocyte progenitor cell | 5.03e-16 | 7 |
myeloid cell | 3.73e-11 | 16 |
connective tissue cell | 2.17e-10 | 46 |
mesenchymal cell | 2.17e-10 | 46 |
hematopoietic cell | 8.59e-10 | 32 |
hematopoietic oligopotent progenitor cell | 8.59e-10 | 32 |
hematopoietic stem cell | 8.59e-10 | 32 |
hematopoietic multipotent progenitor cell | 8.59e-10 | 32 |
bone marrow cell | 1.29e-09 | 3 |
mesenchymal stem cell of the bone marrow | 1.29e-09 | 3 |
stem cell | 1.35e-08 | 97 |
motile cell | 2.00e-08 | 54 |
monopoietic cell | 2.01e-07 | 4 |
myeloid leukocyte | 2.01e-07 | 4 |
phagocyte | 2.01e-07 | 4 |
monocyte | 2.01e-07 | 4 |
macrophage | 2.01e-07 | 4 |
tissue-resident macrophage | 2.01e-07 | 4 |
macrophage dendritic cell progenitor | 2.01e-07 | 4 |
monoblast | 2.01e-07 | 4 |
promonocyte | 2.01e-07 | 4 |
bone marrow macrophage | 2.06e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.05e-21 | 16 |
musculoskeletal system | 8.15e-16 | 32 |
bone element | 8.88e-15 | 22 |
skeletal element | 8.88e-15 | 22 |
skeletal system | 8.88e-15 | 22 |
hemolymphoid system | 2.42e-14 | 48 |
immune system | 2.42e-14 | 48 |
hematopoietic system | 1.30e-13 | 45 |
blood island | 1.30e-13 | 45 |
spleen | 1.74e-11 | 6 |
cavity lining | 1.74e-11 | 6 |
serous membrane | 1.74e-11 | 6 |
gastrointestinal system mesentery | 1.74e-11 | 6 |
stomach region | 1.74e-11 | 6 |
mesentery | 1.74e-11 | 6 |
gastrointestinal system serosa | 1.74e-11 | 6 |
mesentery of stomach | 1.74e-11 | 6 |
gut mesentery | 1.74e-11 | 6 |
dorsal mesentery | 1.74e-11 | 6 |
dorsal mesogastrium | 1.74e-11 | 6 |
peritoneal cavity | 1.74e-11 | 6 |
spleen primordium | 1.74e-11 | 6 |
connective tissue | 2.17e-10 | 46 |
intraembryonic coelom | 8.38e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 1.38e-09 | 3 |
muscle cancer | 1.38e-09 | 3 |