FFCP PHASE1:Mm9::chr1:89700508..89700520,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20215 | |EntrezGene=20215 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=16 | |MCL_coexpression_id=16 | ||
|TSSclassifier=NA | |||
|UniProt=P20443,Q3UPX6,Q8BPV0,Q8C8Y8 | |UniProt=P20443,Q3UPX6,Q8BPV0,Q8C8Y8 | ||
|association_with_transcript=253bp_to_ENSMUST00000077772,ENSMUST00000128761,ENSMUST00000130886,ENSMUST00000155393,ENSMUST00000156381,NM_009118,uc007bxp.1,uc007bxq.1,uc007bxr.1,uc007bxs.1_5end | |association_with_transcript=253bp_to_ENSMUST00000077772,ENSMUST00000128761,ENSMUST00000130886,ENSMUST00000155393,ENSMUST00000156381,NM_009118,uc007bxp.1,uc007bxq.1,uc007bxr.1,uc007bxs.1_5end | ||
|cluster_id=chr1:89700508..89700520,+ | |||
|description=CAGE_peak_3_at_Sag_5end | |description=CAGE_peak_3_at_Sag_5end | ||
|id=chr1:89700508..89700520,+ | |id=chr1:89700508..89700520,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000970!1.05e-12!9;UBERON:0000019!1.05e-12!9;UBERON:0000047!1.05e-12!9;UBERON:0004088!1.05e-12!9;UBERON:0002104!1.05e-12!9;UBERON:0001456!1.05e-12!9;UBERON:0003072!1.05e-12!9;UBERON:0003071!1.05e-12!9;UBERON:0004128!1.05e-12!9;UBERON:0001444!2.37e-10!11;UBERON:0000020!1.82e-09!12;UBERON:0001032!1.82e-09!12;UBERON:0004456!1.82e-09!12;UBERON:0005085!1.02e-08!13;UBERON:0001301!9.45e-07!3;UBERON:0006555!9.45e-07!3;UBERON:0005103!9.45e-07!3;UBERON:0000083!9.45e-07!3;UBERON:0009201!9.45e-07!3;UBERON:0004819!9.45e-07!3;UBERON:0006553!9.45e-07!3;UBERON:0003074!9.45e-07!3;UBERON:0003060!9.45e-07!3 | |ontology_enrichment_uberon=UBERON:0000970!1.05e-12!9;UBERON:0000019!1.05e-12!9;UBERON:0000047!1.05e-12!9;UBERON:0004088!1.05e-12!9;UBERON:0002104!1.05e-12!9;UBERON:0001456!1.05e-12!9;UBERON:0003072!1.05e-12!9;UBERON:0003071!1.05e-12!9;UBERON:0004128!1.05e-12!9;UBERON:0001444!2.37e-10!11;UBERON:0000020!1.82e-09!12;UBERON:0001032!1.82e-09!12;UBERON:0004456!1.82e-09!12;UBERON:0005085!1.02e-08!13;UBERON:0001301!9.45e-07!3;UBERON:0006555!9.45e-07!3;UBERON:0005103!9.45e-07!3;UBERON:0000083!9.45e-07!3;UBERON:0009201!9.45e-07!3;UBERON:0004819!9.45e-07!3;UBERON:0006553!9.45e-07!3;UBERON:0003074!9.45e-07!3;UBERON:0003060!9.45e-07!3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,1.47e-48,9;UBERON:0000019,1.47e-48,9;UBERON:0000047,1.47e-48,9;UBERON:0010312,1.47e-48,9;UBERON:0004088,1.47e-48,9;UBERON:0002104,1.47e-48,9;UBERON:0001456,1.47e-48,9;UBERON:0003072,1.47e-48,9;UBERON:0004128,1.47e-48,9;UBERON:0003071,1.47e-48,9;UBERON:0001444,6.64e-40,11;UBERON:0000020,1.18e-36,12;UBERON:0001032,1.18e-36,12;UBERON:0004456,1.18e-36,12;UBERON:0000033,6.63e-34,13;UBERON:0005085,6.63e-34,13;UBERON:0007811,1.00e-12,36;UBERON:0000153,9.33e-11,43;UBERON:0003056,1.64e-09,49;UBERON:0002346,2.08e-07,64;UBERON:0003075,2.08e-07,64;UBERON:0007284,2.08e-07,64 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0.117588707135705,0.125666591329675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20778804455956,0.162241263067758,0,0.248813941220186,0.252722758433675,27.3574412652416,0,0,0,0,2.4493139694478,12.1708034270607,14.8048724804372,179.022732551399,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120625849856312,0.119372344003136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25347929989024,0,0,0,0,0,0.115884325944855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.409231043169689,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0.117588707135705,0.125666591329675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20778804455956,0.162241263067758,0,0.248813941220186,0.252722758433675,27.3574412652416,0,0,0,0,2.4493139694478,12.1708034270607,14.8048724804372,179.022732551399,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120625849856312,0.119372344003136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25347929989024,0,0,0,0,0,0.115884325944855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.409231043169689,0,0,0,0,0,0,0,0 | ||
|short_description=p3@Sag | |short_description=p3@Sag | ||
}} | }} |
Latest revision as of 18:26, 1 October 2015
Short description: | p3@Sag |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Sag_5end |
Coexpression cluster: | MCL_coexpression_mm9:16 |
Association with transcript: | 253bp_to_ENSMUST00000077772, ENSMUST00000128761, ENSMUST00000130886, ENSMUST00000155393, ENSMUST00000156381, NM_009118, uc007bxp.1, uc007bxq.1, uc007bxr.1, uc007bxs.1_5end |
EntrezGene: | Sag |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
eye | 1.47e-48 | 9 |
camera-type eye | 1.47e-48 | 9 |
simple eye | 1.47e-48 | 9 |
immature eye | 1.47e-48 | 9 |
ocular region | 1.47e-48 | 9 |
visual system | 1.47e-48 | 9 |
face | 1.47e-48 | 9 |
optic cup | 1.47e-48 | 9 |
optic vesicle | 1.47e-48 | 9 |
eye primordium | 1.47e-48 | 9 |
subdivision of head | 6.64e-40 | 11 |
sense organ | 1.18e-36 | 12 |
sensory system | 1.18e-36 | 12 |
entire sense organ system | 1.18e-36 | 12 |
head | 6.63e-34 | 13 |
ectodermal placode | 6.63e-34 | 13 |
craniocervical region | 1.00e-12 | 36 |
anterior region of body | 9.33e-11 | 43 |
pre-chordal neural plate | 1.64e-09 | 49 |
neurectoderm | 2.08e-07 | 64 |
neural plate | 2.08e-07 | 64 |
presumptive neural plate | 2.08e-07 | 64 |