FFCP PHASE1:Mm9::chr13:52830961..52830981,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=105404 | |EntrezGene=105404 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=58 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc007qnb.2,uc007qnc.1,uc011yzk.1_5end | |association_with_transcript=0bp_to_uc007qnb.2,uc007qnc.1,uc011yzk.1_5end | ||
|cluster_id=chr13:52830961..52830981,- | |||
|description=CAGE_peak_1_at_BB123696_5end | |description=CAGE_peak_1_at_BB123696_5end | ||
|id=chr13:52830961..52830981,- | |id=chr13:52830961..52830981,- | ||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,6.33e-18,3;CL:0000239,4.69e-15,6;CL:0000677,4.69e-15,6;CL:0000584,4.69e-15,6;CL:0000075,6.09e-13,7;CL:0000066,1.92e-10,25;CL:0002563,4.09e-10,9;CL:0002251,4.09e-10,9;CL:0000473,5.51e-08,7 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,5.83e-13,15;UBERON:0004923,8.79e-11,24;UBERON:0001242,9.49e-11,13;UBERON:0001262,9.49e-11,13;UBERON:0004786,9.49e-11,13;UBERON:0000161,1.38e-10,5;UBERON:0003350,4.09e-10,9;UBERON:0004808,4.09e-10,9;UBERON:0001277,4.09e-10,9;UBERON:0000162,1.42e-08,3;UBERON:0001353,1.42e-08,3;UBERON:0000163,1.42e-08,3;UBERON:0006866,1.42e-08,3;UBERON:0001046,1.42e-08,3;UBERON:0000164,1.42e-08,3;UBERON:0000931,1.42e-08,3;UBERON:0000485,2.61e-08,11;UBERON:0001255,4.68e-07,1;UBERON:0001556,4.68e-07,1;UBERON:0002367,5.34e-07,1;UBERON:0009846,5.34e-07,1;UBERON:0003353,5.34e-07,1;UBERON:0004902,5.34e-07,1;UBERON:0003820,5.34e-07,1;UBERON:0009847,5.34e-07,1 | |||
|phase1_expression=0,4.18770489167233,5.91499011206397,0,0,3.69334398206158,4.43864017131499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11994695955385,0.68822784320151,4.01962374880514,16.7997178502039,11.4199753323521,0,0,14.4124831925948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,0,0,0.388859798148567,0.839918529752175,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86391761218122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252722758433675,0,0,0,0,0,0,0,0,0,0,0,0,0.657587197282725,0,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257734922644187,0,0.22237804384487,0.190225626112559,0,0.164698954724011,0.251335208800269,0.198956472041151,0,0,0,0,0,0,0,0.203651327845314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162886959353576,0.329940245945071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329098041204242,0.608929898229199,9.1521966144847,0,6.17479514553893,0.16488625294148,0.161464426695906,0,0,0.328281799490123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24267862617385,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821687657318618,0.389762468933385,0.358053391334963,0.596044064343795,0,0,0,0,0.302478555410522,0.0974578807397524,0,0.233753804363138,0.226730383615211,0,0,0,6.37525660306228,3.00291960721891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222246727801615,0.206035057238894,0,0.252697211763798,0.760437899670719,0,0.0936415074698824,0.256100609619477,0.34461281373368,0,0.231768651889711,0.192909220463705,0,0.147198920134397,0.342869252385415,0.177475806159338,0.476872379894642,0,0.470546902076653,0.338458431566706,0.182927972872773,0.526139422875686,0.271608227691724,0,0.118635018124174,0,0,0,0,0,0.233931608445408,0,0.191288332068843,0,0 | |phase1_expression=0,4.18770489167233,5.91499011206397,0,0,3.69334398206158,4.43864017131499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11994695955385,0.68822784320151,4.01962374880514,16.7997178502039,11.4199753323521,0,0,14.4124831925948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56478268869608,0,0,0.388859798148567,0.839918529752175,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86391761218122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252722758433675,0,0,0,0,0,0,0,0,0,0,0,0,0.657587197282725,0,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257734922644187,0,0.22237804384487,0.190225626112559,0,0.164698954724011,0.251335208800269,0.198956472041151,0,0,0,0,0,0,0,0.203651327845314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162886959353576,0.329940245945071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329098041204242,0.608929898229199,9.1521966144847,0,6.17479514553893,0.16488625294148,0.161464426695906,0,0,0.328281799490123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24267862617385,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821687657318618,0.389762468933385,0.358053391334963,0.596044064343795,0,0,0,0,0.302478555410522,0.0974578807397524,0,0.233753804363138,0.226730383615211,0,0,0,6.37525660306228,3.00291960721891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222246727801615,0.206035057238894,0,0.252697211763798,0.760437899670719,0,0.0936415074698824,0.256100609619477,0.34461281373368,0,0.231768651889711,0.192909220463705,0,0.147198920134397,0.342869252385415,0.177475806159338,0.476872379894642,0,0.470546902076653,0.338458431566706,0.182927972872773,0.526139422875686,0.271608227691724,0,0.118635018124174,0,0,0,0,0,0.233931608445408,0,0.191288332068843,0,0 | ||
|short_description=p1@BB123696 | |short_description=p1@BB123696 | ||
}} | }} |
Latest revision as of 17:45, 1 October 2015
Short description: | p1@BB123696 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_BB123696_5end |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | 0bp_to_uc007qnb.2, uc007qnc.1, uc011yzk.1_5end |
EntrezGene: | BB123696 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 6.33e-18 | 3 |
brush border epithelial cell | 4.69e-15 | 6 |
gut absorptive cell | 4.69e-15 | 6 |
enterocyte | 4.69e-15 | 6 |
columnar/cuboidal epithelial cell | 6.09e-13 | 7 |
epithelial cell | 1.92e-10 | 25 |
intestinal epithelial cell | 4.09e-10 | 9 |
epithelial cell of alimentary canal | 4.09e-10 | 9 |
defensive cell | 5.51e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
mucosa | 5.83e-13 | 15 |
organ component layer | 8.79e-11 | 24 |
intestinal mucosa | 9.49e-11 | 13 |
wall of intestine | 9.49e-11 | 13 |
gastrointestinal system mucosa | 9.49e-11 | 13 |
orifice | 1.38e-10 | 5 |
epithelium of mucosa | 4.09e-10 | 9 |
gastrointestinal system epithelium | 4.09e-10 | 9 |
intestinal epithelium | 4.09e-10 | 9 |
cloaca | 1.42e-08 | 3 |
anal region | 1.42e-08 | 3 |
embryonic cloaca | 1.42e-08 | 3 |
terminal part of digestive tract | 1.42e-08 | 3 |
hindgut | 1.42e-08 | 3 |
primitive urogenital sinus | 1.42e-08 | 3 |
proctodeum | 1.42e-08 | 3 |
simple columnar epithelium | 2.61e-08 | 11 |
urinary bladder | 4.68e-07 | 1 |
lower urinary tract | 4.68e-07 | 1 |
prostate gland | 5.34e-07 | 1 |
embryonic cloacal epithelium | 5.34e-07 | 1 |
epithelium of hindgut | 5.34e-07 | 1 |
urogenital sinus epithelium | 5.34e-07 | 1 |
prostate bud | 5.34e-07 | 1 |
prostate field | 5.34e-07 | 1 |