FFCP PHASE1:Mm9::chr6:57775276..57775299,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:57775276..57775299,-
|short_description=p4@Vopp1
|description=CAGE_peak_4_at_Vopp1_5end
|association_with_transcript=-128bp_to_ENSMUST00000114297,ENSMUST00...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=232023 | |EntrezGene=232023 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=27 | |||
|TSSclassifier=NA | |||
|UniProt=Q8R1C3 | |UniProt=Q8R1C3 | ||
|association_with_transcript=-128bp_to_ENSMUST00000114297,ENSMUST00000145608_5end | |||
|cluster_id=chr6:57775276..57775299,- | |||
|description=CAGE_peak_4_at_Vopp1_5end | |||
|id=chr6:57775276..57775299,- | |||
|ontology_enrichment_celltype=CL:0000117!3.46e-07!23;CL:0000337!3.46e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002612,6.48e-11,3;CL:0002614,1.77e-10,3;CL:0000117,6.62e-08,23;CL:0000337,6.62e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.31e-08!63;UBERON:0002346!4.57e-07!71;UBERON:0003075!4.57e-07!71;UBERON:0007284!4.57e-07!71;UBERON:0003056!8.22e-07!49;UBERON:0007811!9.88e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010147,1.14e-15,2;UBERON:0003937,1.14e-15,2;UBERON:0005399,1.14e-15,2;UBERON:0002257,6.48e-11,3;UBERON:0002038,1.77e-10,3;UBERON:0009663,1.77e-10,3;UBERON:0009661,1.77e-10,3;UBERON:0000125,1.77e-10,3;UBERON:0002308,1.77e-10,3;UBERON:0002367,4.39e-09,1;UBERON:0009846,4.39e-09,1;UBERON:0003353,4.39e-09,1;UBERON:0004902,4.39e-09,1;UBERON:0003820,4.39e-09,1;UBERON:0009847,4.39e-09,1;UBERON:0000998,2.89e-08,1;UBERON:0007194,2.89e-08,1;UBERON:0006868,2.89e-08,1;UBERON:0002950,4.40e-08,4;UBERON:0001891,4.40e-08,4;UBERON:0009616,4.40e-08,4;UBERON:0010286,4.40e-08,4;UBERON:0002020,1.37e-07,34;UBERON:0001948,6.78e-07,5;UBERON:0002315,6.78e-07,5 | |||
|phase1_expression=0.320297694209588,0.348975407639361,0.454999239389536,0,0,0,0,0.129123323441576,0,0,0,0,0.171200729931206,0,0,0.202475267389826,1.39912375625629,0,0.137114433605739,0.42438965179803,0.17008658030214,0,0,0.159992422793407,0,0,0.430761996159075,0.215471232685889,0,0,0.665191531965914,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0.782391344348039,0,0.219686182734472,0,0,0,0,0.725362142011344,0,0,0,0,0.404632921719196,0.528990979272033,0,0.338844532069132,0,0,0,0,0,0,0.103689612308478,0,0.210324961351382,0.285650984403804,0.220868540951614,0.489963196859816,0.191690942036473,0,1.10115880999389,0.893811366596314,0.153606533256243,0.527545150920775,0.731901148819277,0.52091337055676,1.11673199600552,1.12552522006336,0.30559649555362,1.17851434189467,0.996601765593721,1.86399445825301,0,0,0.289864488701678,0,0,0,0,0,0,0,0,0.35333957451034,0.14084341977668,0,0,0,0.649473123033642,0.253359865475099,0,0.11418387971906,0,0,0.173485326766136,0.304465478312141,0.461230994512117,0,0,0,0,0,0,0.323533699894818,0.220841518460394,0,0,0,0.41889341362691,0,0.239630249011841,0.599902730993408,0.254140454146129,0.149790639404823,0,0.251308704225729,0.695297280769106,0,0,0.162241263067758,0.712875546952214,0.124406970610093,0,0.841767423545896,0.130120442962704,0.229902104433473,0,0.150704817835715,0.272145996605311,0.640568601424249,1.68663104207512,0.258703370739016,0,0,0.175951124163949,0,0.278047249225598,0.348252166522167,0,0.199034266818493,0,0,0.568326998791185,0,0.938104239924385,0.180062061461015,0,0.196764231747404,0,0.232533944750408,0,0.233530684734339,0.16455984991348,0.164167464079095,0,0.292399974850665,0.219550115291051,0,0,0.102904612379284,0,0,0.639864751605702,0.232236671860439,0,0.403367049246685,0,0,0,0.164698954724011,0.251335208800269,0,0,0,0,0,0.379335801906163,0.228497025219458,0,0.407302655690628,0,0.0701358198903186,0.189709611372772,0,0,0,0,0.166845105716094,0,0.224862112384854,0.405720242777006,0.241177159752417,0.50925170356284,0.575392274901621,0.162135226775035,0,0,0,0,0,0,0,0,0,0,0,0,0.167506257441816,0,0.195133647857799,0.157635144106191,0,0,0,0.345369963731791,0,0,0,0,0.275936746304732,0,0.35163505977661,0,0,0,0,0.215423397732799,0.238968797952552,0.222798674082394,0.283076530788832,0,0,0,1.28528526568723,0.851640511249612,0.534196811001766,0.651547837414304,0.494910368917606,0,0,0,0,0.295301892880773,0,0,0,0,0,0,0,0.340439605753788,0.36012218806262,0.388076051348264,0.857348140126369,0.354680467284547,0.178368817602071,0.329098041204242,0.304464949114599,0,0,11.688005096913,0,0.322928853391811,0,0.119372344003136,0,0.291480836629851,0,0,0,0.185194527369712,0.753473828018764,0.27338845544205,0.457556346413045,0.339956859987711,0.279902904647316,0.276399947608848,0,0,0.406638934253697,0.324016022465404,0,0.218362563746178,0,0.247960367176008,0,0,0,0,0.149516546043979,0,0,0.129159823477731,0,0.117357238645754,0,0.104859344425711,0,0,0.316011120628178,0.810900861160657,0.308132871494482,0.51968329191118,0.179026695667481,0,0.120195449519969,0,0.201932899896295,0.0762068066549998,0.201652370273681,0.0974578807397524,0.192423683280659,0,0.453460767230423,0.221985953374065,0,0.335769232728157,0.19318959403219,0,0.183151624267265,0.214368379079066,1.00314420807073,0,0.920650473014354,1.71868654031819,1.54667864109319,0,0,0.675022500231806,0.45032120322422,0,0,0.207574695168353,0,0.170733605754134,0.243106717068294,0,0,0,0.412070114477788,0,0,0,0,0,0.128050304809739,0.229741875822453,0.476293691283074,0.347652977834566,0.192909220463705,0,0.147198920134397,0,0.177475806159338,0,0,0.0941093804153306,0.25384382367503,0.182927972872773,0.263069711437843,0,0,0.118635018124174,0.0985044823755635,0,0,0.192906610981141,0.249810577937946,0.233931608445408,0,0,0,0.231867835620421 | |phase1_expression=0.320297694209588,0.348975407639361,0.454999239389536,0,0,0,0,0.129123323441576,0,0,0,0,0.171200729931206,0,0,0.202475267389826,1.39912375625629,0,0.137114433605739,0.42438965179803,0.17008658030214,0,0,0.159992422793407,0,0,0.430761996159075,0.215471232685889,0,0,0.665191531965914,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0.782391344348039,0,0.219686182734472,0,0,0,0,0.725362142011344,0,0,0,0,0.404632921719196,0.528990979272033,0,0.338844532069132,0,0,0,0,0,0,0.103689612308478,0,0.210324961351382,0.285650984403804,0.220868540951614,0.489963196859816,0.191690942036473,0,1.10115880999389,0.893811366596314,0.153606533256243,0.527545150920775,0.731901148819277,0.52091337055676,1.11673199600552,1.12552522006336,0.30559649555362,1.17851434189467,0.996601765593721,1.86399445825301,0,0,0.289864488701678,0,0,0,0,0,0,0,0,0.35333957451034,0.14084341977668,0,0,0,0.649473123033642,0.253359865475099,0,0.11418387971906,0,0,0.173485326766136,0.304465478312141,0.461230994512117,0,0,0,0,0,0,0.323533699894818,0.220841518460394,0,0,0,0.41889341362691,0,0.239630249011841,0.599902730993408,0.254140454146129,0.149790639404823,0,0.251308704225729,0.695297280769106,0,0,0.162241263067758,0.712875546952214,0.124406970610093,0,0.841767423545896,0.130120442962704,0.229902104433473,0,0.150704817835715,0.272145996605311,0.640568601424249,1.68663104207512,0.258703370739016,0,0,0.175951124163949,0,0.278047249225598,0.348252166522167,0,0.199034266818493,0,0,0.568326998791185,0,0.938104239924385,0.180062061461015,0,0.196764231747404,0,0.232533944750408,0,0.233530684734339,0.16455984991348,0.164167464079095,0,0.292399974850665,0.219550115291051,0,0,0.102904612379284,0,0,0.639864751605702,0.232236671860439,0,0.403367049246685,0,0,0,0.164698954724011,0.251335208800269,0,0,0,0,0,0.379335801906163,0.228497025219458,0,0.407302655690628,0,0.0701358198903186,0.189709611372772,0,0,0,0,0.166845105716094,0,0.224862112384854,0.405720242777006,0.241177159752417,0.50925170356284,0.575392274901621,0.162135226775035,0,0,0,0,0,0,0,0,0,0,0,0,0.167506257441816,0,0.195133647857799,0.157635144106191,0,0,0,0.345369963731791,0,0,0,0,0.275936746304732,0,0.35163505977661,0,0,0,0,0.215423397732799,0.238968797952552,0.222798674082394,0.283076530788832,0,0,0,1.28528526568723,0.851640511249612,0.534196811001766,0.651547837414304,0.494910368917606,0,0,0,0,0.295301892880773,0,0,0,0,0,0,0,0.340439605753788,0.36012218806262,0.388076051348264,0.857348140126369,0.354680467284547,0.178368817602071,0.329098041204242,0.304464949114599,0,0,11.688005096913,0,0.322928853391811,0,0.119372344003136,0,0.291480836629851,0,0,0,0.185194527369712,0.753473828018764,0.27338845544205,0.457556346413045,0.339956859987711,0.279902904647316,0.276399947608848,0,0,0.406638934253697,0.324016022465404,0,0.218362563746178,0,0.247960367176008,0,0,0,0,0.149516546043979,0,0,0.129159823477731,0,0.117357238645754,0,0.104859344425711,0,0,0.316011120628178,0.810900861160657,0.308132871494482,0.51968329191118,0.179026695667481,0,0.120195449519969,0,0.201932899896295,0.0762068066549998,0.201652370273681,0.0974578807397524,0.192423683280659,0,0.453460767230423,0.221985953374065,0,0.335769232728157,0.19318959403219,0,0.183151624267265,0.214368379079066,1.00314420807073,0,0.920650473014354,1.71868654031819,1.54667864109319,0,0,0.675022500231806,0.45032120322422,0,0,0.207574695168353,0,0.170733605754134,0.243106717068294,0,0,0,0.412070114477788,0,0,0,0,0,0.128050304809739,0.229741875822453,0.476293691283074,0.347652977834566,0.192909220463705,0,0.147198920134397,0,0.177475806159338,0,0,0.0941093804153306,0.25384382367503,0.182927972872773,0.263069711437843,0,0,0.118635018124174,0.0985044823755635,0,0,0.192906610981141,0.249810577937946,0.233931608445408,0,0,0,0.231867835620421 | ||
|short_description=p4@Vopp1 | |||
}} | }} |
Latest revision as of 14:48, 1 October 2015
Short description: | p4@Vopp1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Vopp1_5end |
Coexpression cluster: | MCL_coexpression_mm9:27 |
Association with transcript: | -128bp_to_ENSMUST00000114297, ENSMUST00000145608_5end |
EntrezGene: | Vopp1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the ventral spinal cord | 6.48e-11 | 3 |
neuron of the substantia nigra | 1.77e-10 | 3 |
CNS neuron (sensu Vertebrata) | 6.62e-08 | 23 |
neuroblast (sensu Vertebrata) | 6.62e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
male accessory sex gland | 1.14e-15 | 2 |
sex gland | 1.14e-15 | 2 |
male reproductive gland | 1.14e-15 | 2 |
ventral horn of spinal cord | 6.48e-11 | 3 |
substantia nigra | 1.77e-10 | 3 |
telencephalic nucleus | 1.77e-10 | 3 |
midbrain nucleus | 1.77e-10 | 3 |
neural nucleus | 1.77e-10 | 3 |
nucleus of brain | 1.77e-10 | 3 |
prostate gland | 4.39e-09 | 1 |
embryonic cloacal epithelium | 4.39e-09 | 1 |
epithelium of hindgut | 4.39e-09 | 1 |
urogenital sinus epithelium | 4.39e-09 | 1 |
prostate bud | 4.39e-09 | 1 |
prostate field | 4.39e-09 | 1 |
seminal vesicle | 2.89e-08 | 1 |
vesicular gland | 2.89e-08 | 1 |
seminal fluid secreting gland | 2.89e-08 | 1 |
regional part of midbrain | 4.40e-08 | 4 |
midbrain | 4.40e-08 | 4 |
presumptive midbrain | 4.40e-08 | 4 |
midbrain neural tube | 4.40e-08 | 4 |
gray matter | 1.37e-07 | 34 |
regional part of spinal cord | 6.78e-07 | 5 |
gray matter of spinal cord | 6.78e-07 | 5 |