FFCP PHASE1:Mm9::chr5:102636216..102636243,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=231532 | |EntrezGene=231532 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=20 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc008yiu.1_5end | |association_with_transcript=0bp_to_uc008yiu.1_5end | ||
|cluster_id=chr5:102636216..102636243,+ | |||
|description=CAGE_peak_13_at_Arhgap24_5end | |description=CAGE_peak_13_at_Arhgap24_5end | ||
|id=chr5:102636216..102636243,+ | |id=chr5:102636216..102636243,+ | ||
|ontology_enrichment_celltype=CL:0000540!1.16e-09!33;CL:0000047!1.16e-09!33;CL:0000031!1.16e-09!33;CL:0000404!1.16e-09!33;CL:0000117!5.14e-07!23;CL:0000337!5.14e-07!23 | |ontology_enrichment_celltype=CL:0000540!1.16e-09!33;CL:0000047!1.16e-09!33;CL:0000031!1.16e-09!33;CL:0000404!1.16e-09!33;CL:0000117!5.14e-07!23;CL:0000337!5.14e-07!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.43e-16,33;CL:0000047,1.43e-16,33;CL:0000031,1.43e-16,33;CL:0000404,1.43e-16,33;CL:0000117,1.26e-14,23;CL:0000337,1.26e-14,23;CL:0000393,2.22e-13,39;CL:0000211,2.22e-13,39;CL:0002319,9.42e-12,43;CL:0000221,2.16e-11,44;CL:0000133,2.16e-11,44;CL:0002614,2.26e-08,3;CL:0002610,6.60e-08,3;CL:0002612,1.00e-07,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!8.36e-16!102;UBERON:0000924!8.36e-16!102;UBERON:0006601!8.36e-16!102;UBERON:0000073!6.09e-11!75;UBERON:0001016!6.09e-11!75;UBERON:0002346!8.35e-11!71;UBERON:0003075!8.35e-11!71;UBERON:0007284!8.35e-11!71;UBERON:0001017!2.37e-10!73;UBERON:0005743!2.37e-10!73;UBERON:0000033!6.69e-10!63;UBERON:0001049!4.84e-07!52;UBERON:0005068!4.84e-07!52;UBERON:0006241!4.84e-07!52;UBERON:0007135!4.84e-07!52 | |ontology_enrichment_uberon=UBERON:0004121!8.36e-16!102;UBERON:0000924!8.36e-16!102;UBERON:0006601!8.36e-16!102;UBERON:0000073!6.09e-11!75;UBERON:0001016!6.09e-11!75;UBERON:0002346!8.35e-11!71;UBERON:0003075!8.35e-11!71;UBERON:0007284!8.35e-11!71;UBERON:0001017!2.37e-10!73;UBERON:0005743!2.37e-10!73;UBERON:0000033!6.69e-10!63;UBERON:0001049!4.84e-07!52;UBERON:0005068!4.84e-07!52;UBERON:0006241!4.84e-07!52;UBERON:0007135!4.84e-07!52 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,7.12e-16,73;UBERON:0001016,2.79e-15,75;UBERON:0004121,2.35e-14,95;UBERON:0000924,2.35e-14,95;UBERON:0006601,2.35e-14,95;UBERON:0002240,4.81e-14,6;UBERON:0005174,4.81e-14,6;UBERON:0001137,4.81e-14,6;UBERON:0000073,4.69e-13,54;UBERON:0003076,7.13e-12,12;UBERON:0003057,7.13e-12,12;UBERON:0010371,7.77e-12,73;UBERON:0001948,7.84e-12,5;UBERON:0002315,7.84e-12,5;UBERON:0002346,1.79e-11,64;UBERON:0003075,1.79e-11,64;UBERON:0007284,1.79e-11,64;UBERON:0002950,9.99e-11,4;UBERON:0001891,9.99e-11,4;UBERON:0009616,9.99e-11,4;UBERON:0010286,9.99e-11,4;UBERON:0001049,1.00e-10,52;UBERON:0005068,1.00e-10,52;UBERON:0006241,1.00e-10,52;UBERON:0007135,1.00e-10,52;UBERON:0002038,2.26e-08,3;UBERON:0009663,2.26e-08,3;UBERON:0009661,2.26e-08,3;UBERON:0000125,2.26e-08,3;UBERON:0002308,2.26e-08,3;UBERON:0010314,3.81e-08,92;UBERON:0004684,6.60e-08,3;UBERON:0002275,6.60e-08,3;UBERON:0002257,1.00e-07,3 | |||
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| ||
|short_description=p13@Arhgap24 | |short_description=p13@Arhgap24 | ||
}} | }} |
Latest revision as of 12:07, 1 October 2015
Short description: | p13@Arhgap24 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_13_at_Arhgap24_5end |
Coexpression cluster: | MCL_coexpression_mm9:20 |
Association with transcript: | 0bp_to_uc008yiu.1_5end |
EntrezGene: | Arhgap24 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.43e-16 | 33 |
neuronal stem cell | 1.43e-16 | 33 |
neuroblast | 1.43e-16 | 33 |
electrically signaling cell | 1.43e-16 | 33 |
CNS neuron (sensu Vertebrata) | 1.26e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.26e-14 | 23 |
electrically responsive cell | 2.22e-13 | 39 |
electrically active cell | 2.22e-13 | 39 |
neural cell | 9.42e-12 | 43 |
ectodermal cell | 2.16e-11 | 44 |
neurectodermal cell | 2.16e-11 | 44 |
neuron of the substantia nigra | 2.26e-08 | 3 |
raphe nuclei neuron | 6.60e-08 | 3 |
neuron of the ventral spinal cord | 1.00e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 7.12e-16 | 73 |
nervous system | 2.79e-15 | 75 |
ectoderm-derived structure | 2.35e-14 | 95 |
ectoderm | 2.35e-14 | 95 |
presumptive ectoderm | 2.35e-14 | 95 |
spinal cord | 4.81e-14 | 6 |
dorsal region element | 4.81e-14 | 6 |
dorsum | 4.81e-14 | 6 |
regional part of nervous system | 4.69e-13 | 54 |
posterior neural tube | 7.13e-12 | 12 |
chordal neural plate | 7.13e-12 | 12 |
ecto-epithelium | 7.77e-12 | 73 |
regional part of spinal cord | 7.84e-12 | 5 |
gray matter of spinal cord | 7.84e-12 | 5 |
neurectoderm | 1.79e-11 | 64 |
neural plate | 1.79e-11 | 64 |
presumptive neural plate | 1.79e-11 | 64 |
regional part of midbrain | 9.99e-11 | 4 |
midbrain | 9.99e-11 | 4 |
presumptive midbrain | 9.99e-11 | 4 |
midbrain neural tube | 9.99e-11 | 4 |
neural tube | 1.00e-10 | 52 |
neural rod | 1.00e-10 | 52 |
future spinal cord | 1.00e-10 | 52 |
neural keel | 1.00e-10 | 52 |
substantia nigra | 2.26e-08 | 3 |
telencephalic nucleus | 2.26e-08 | 3 |
midbrain nucleus | 2.26e-08 | 3 |
neural nucleus | 2.26e-08 | 3 |
nucleus of brain | 2.26e-08 | 3 |
structure with developmental contribution from neural crest | 3.81e-08 | 92 |
raphe nuclei | 6.60e-08 | 3 |
reticular formation | 6.60e-08 | 3 |
ventral horn of spinal cord | 1.00e-07 | 3 |